Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1973 ATGGGCCTTGGCAACAGTTTTGGACATAAAGAGGAAAAGCAAAGTCTAGAACATGCATTGGCTAAAAGAAGGGGAAAACATGGAGAAGACGAGTTTGCAGAAGTTCCCAACAAACCCGCAAGCACTAGCACCGTCGTTATCCGCAAACTCCGCCAAACAAACTACTCCTGCACGGCCCTCTCATCTCCACCATCGCCGCCCAGCCATTCCAACCTTCGTCTTGACCTTTCTAAATTCAAATCCTCGCATCGGGGGCGGGGATACCTAATTTTCAATGGCCGAAATTCCGTTGTAATCGAGTCCAATTTCGACGAACTTTCCTACACAACTGCCGCTAAAGCAAGAAATTCCAGTGCGAGGCTTAATTCGATGCCTTCTTTCCGCGCTTTTCTCAACAGCCCCGTTGGCCCTAAAACAACTCATTTTTGGGGGCCTGTTGCTAACTTTGGTTTCGTCGCTGCTGGGCTTGCAGATGTGAGAAAACCCGCTGATATGATTTCCGGGAGAATGACTTCAGTTTTGTGCGTATATTCGTTGTTATGCATGAGATTTGGGTATATGGTTCGGCCTCGAAACTATTTGCTTATGGGATGTCATGCTGCGAATGAGACTGTTCAGCTCTATCTTCTCTCTCGTTGGGCGATAGGCCAAAGGAAGACTGTTAAAAATTACAACAACGAGTAG 684 47.08 MGLGNSFGHKEEKQSLEHALAKRRGKHGEDEFAEVPNKPASTSTVVIRKLRQTNYSCTALSSPPSPPSHSNLRLDLSKFKSSHRGRGYLIFNGRNSVVIESNFDELSYTTAAKARNSSARLNSMPSFRAFLNSPVGPKTTHFWGPVANFGFVAAGLADVRKPADMISGRMTSVLCVYSLLCMRFGYMVRPRNYLLMGCHAANETVQLYLLSRWAIGQRKTVKNYNNE 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29879352 29881126 - CcPI632755_06g019730.1 Cco06g1973 182573

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1973 227 PANTHER UPF0041 BRAIN PROTEIN 44-RELATED 129 215 - -
Cco06g1973 227 MobiDBLite consensus disorder prediction 10 34 - -
Cco06g1973 227 Pfam Mitochondrial pyruvate carriers 127 217 IPR005336 GO:0005743(InterPro)|GO:0006850(InterPro)
Cco06g1973 227 MobiDBLite consensus disorder prediction 1 40 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1973 K22138 - - csv:101217186 204.527
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1399 Cco-Chr4:29414994 Cco06g1973 Cco-Chr6:29879352 3.90E-39 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g148 . . . . . . . . . . Cma10g00073 Cma11g00047 Car10g00062 Car11g00041 . . Cpe04g01604 Bhi02g00541 Tan09g2354 . . Hepe09g0064 . . Cla06g01729 Cam06g1919 Cec06g1969 Cco06g1973 Clacu06g1875 Cmu06g1817 Cre06g2632 Cone2ag0961 Cone16ag0030 . Cone19ag0198 . . . . . . . . . . . . . Cmo10g00070 Cmo11g00047 . . . . . . . . . . . . . . . . . . . . Lsi06g01627 Csa01g00072 Chy02g02648 Cme02g02048
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003153 1 3 0 1 1 1 3 2 1 1 2 2 1 1 2 1 1 3 3 2 2 2 2 2 2 2 1 2 3 1 51