Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1976 ATGACGTCGACGTATCTTCTCTATGAATCTGCTTCTGGTTATGCTCTGTTTCATGTCCACGGCCTTGACGAAATTGGGCAGAACACGGAAGCCGTTCGGAGCTCCGTCTCCGACCTTAACCGCTTCGGCAAGGTCGTGAAGCTTGCTGCTTTCCACCCTTTCGAGTCGGCTCTCGATGCTCTCAAGCAGTGCAACTCAGTCTCTGAAGGGCTCATGACTGACGAGTTGAGGAGTTTTTTGGAAATTAACCTTCCAAAAGTTAAGGAAGGTAAGAAGGCCAAGTTCGTTTTGGGACTAGCTGAACCCAAAATTGGGTCAAACATCTTTGAAGAGACTAAAATCCCATGCCAAAGCAATGAGTTTGTTCTGGAGCTGCTCCGGGGTGTGCGTCTACACTTTGACAAATTTATCAAAGACCTCAAGCCAGGGGATTTGGAGAAGGCCCAACTTGGTTTGGGACACAGTTACAGTCGAGCTAAAGTAAAGTTCAATGTTAACCGTGTTGATAATATGGTGATTCAGGCGATCTTCCTTCTTGACACTCTAGATAAGGACATCAATTCCTTCTCAATGAGAGTCAGAGAGTGGTATTCGTGGCATTTCCCTGAGTTGGTGAAGATTGTCAGTGACAATTATCTTTATGCTAAAGTTGCTAAATTTATTGAGGACAAGTCGAAGTTGGCAGAAGATAAAATCCCTGCCTTGACTGACATAATTGGCGATGAAGATAAAGCGAAGGAGATTGTTGAAGCAGCCAAAGCCTCCATGGGCCAGGATTTGTCTGCCATTGACTTGATTAATGTCCAGCAATTTGCACAGAGGGTGATGGATCTTTCTGAATACAGGAAGAAGCTTTATGATTATCTAGTTGCTAAAATGAATGATATTGCTCCCAATTTGGCCTCTTTGATTGGTGAAGTTGTTGGGGCCCGTTTAATTTCTCATGCGGGCAGTCTCACAAATTTGGCCAAGTGCCCTTCTTCCACCCTACAGATTCTTGGTGCGGAGAAAGCACTCTTCAGGGCTTTGAAAACAAGAGGAAACACTCCTAAATATGGTCTGATTTTTCATTCATCTTTCATTGGGCGAGCATCTGCACGGAACAAAGGCCGAATGGCTCGGTATCTTGCAAATAAATGTTCTATTGCATCACGTATTGATTGCTTTGCAGAGAGCAGCACCACAACCTTTGGAGAAAAACTTCGTGAGCAAGTTGAAGAGCGCCTTGACTTTTATGACAAGGGAATAGCACCTCGTAAAAACATAGATGTTATGAAAGCTGCAATTGAAAGTGCTGATAACAAAGCAACTGATATGGATGTAGAAGAAGTGCCAAGTGAAGCTTCAGGGAAGAAGAGCAAGAAAAAGAAATCAAAAGCTAATGTGAACGGTGAAGTTGAAGACAGGCCAAGTGCGACTGAAAACGGTGATGTTTCAGAGGATACAAAATCAGAAAAGAAGAAAAAGAAGGAGAAGCGAAAGTTGGATAGGGAAACAGAGGAGCAGCAGCAGGCTGCAGAACTGGTAAATGGAGTAAACGAGGAGGAGGAATCTGGCAAGAAGAAGAAGAAAAAGAAGAGCAAGGATGAAAATAAGGGGGATGATCATGTTGCTGCAGAAGATGAGCAGACGGTTGAAGAAGAAGTAGACGACGACGACGACGACCAAACAGCCATGGCCAGTAGTTCTGGATCGGCGAGCTTAGAAGATGTCCCTTCCATCCATCTCATGACCGAACTCCTCCGTCGCATGAAATGCGCTTCAAAACCCGACAAGCGCCTCATTCTCATTGGTCCACCTGGATCAGGAAAAGGCACCCAATCTCCAATCATCAAGGATGAATACTGCTTGTGTCACTTGGCAACTGGTGATATGTTAAGAGCTGCTGTTGCTGCTAAAACTCCACTTGGTGTTAAGGCTAAGCAGGCCATGGACAAGGGTGAACTTGTGTCTGATGACTTGGTTGTTGGCATCATTGAGGAAGCAGTGAAGAAGCCTTCATGTCAGAAAGGTTTCATTCTTGATGGATTTCCCAGAACCGTGGTCCAAGCACAGAAGCTGGATGAGATGCTAGAAAAGCAGAATGCTAAAATTGATAAGGTGCTTAATTTTTCGATTGATGATGCGATCTTGGAGGAGAGGATTACTGGACGATGGATACACCAAGCGAGCGGAAGGTCTTATCACACAAAATTTGCTCCTCCAAAGGTTGCTGGTGTCGATGATGTAACGGGAGAACCTTTGATTCAACGTAAGGATGATACTGCAGCAGTTCTCAAATCTCGGCTGGAGGCTTTCCACAAGCAAACAGAACCGGTGATTGATTACTATTCCAATAAGAAAATTGTCGCAGATCTTCAAGCAGAGAAGCCTCCCAAACAGTCTGCAGATTCTTGGATATTGAAATTCCATGTTTTGTTGGAATTTCTTTATCGAACAGCCCCCATTGGAATTGCATTGCTATTTGAATAG 2472 44.34 MTSTYLLYESASGYALFHVHGLDEIGQNTEAVRSSVSDLNRFGKVVKLAAFHPFESALDALKQCNSVSEGLMTDELRSFLEINLPKVKEGKKAKFVLGLAEPKIGSNIFEETKIPCQSNEFVLELLRGVRLHFDKFIKDLKPGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVSDNYLYAKVAKFIEDKSKLAEDKIPALTDIIGDEDKAKEIVEAAKASMGQDLSAIDLINVQQFAQRVMDLSEYRKKLYDYLVAKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAESSTTTFGEKLREQVEERLDFYDKGIAPRKNIDVMKAAIESADNKATDMDVEEVPSEASGKKSKKKKSKANVNGEVEDRPSATENGDVSEDTKSEKKKKKEKRKLDRETEEQQQAAELVNGVNEEEESGKKKKKKKSKDENKGDDHVAAEDEQTVEEEVDDDDDDQTAMASSSGSASLEDVPSIHLMTELLRRMKCASKPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGVKAKQAMDKGELVSDDLVVGIIEEAVKKPSCQKGFILDGFPRTVVQAQKLDEMLEKQNAKIDKVLNFSIDDAILEERITGRWIHQASGRSYHTKFAPPKVAGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSNKKIVADLQAEKPPKQSADSWILKFHVLLEFLYRTAPIGIALLFE 823
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29904947 29912736 - CcPI632755_06g019760.1 Cco06g1976 182576

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1976 823 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 592 783 IPR027417 -
Cco06g1976 823 ProSitePatterns Adenylate kinase signature. 672 683 IPR033690 -
Cco06g1976 823 PANTHER NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58 5 532 IPR045056 GO:0030515(InterPro)|GO:0030515(PANTHER)|GO:0031428(InterPro)|GO:0031428(PANTHER)|GO:0032040(PANTHER)|GO:0032040(InterPro)
Cco06g1976 823 Pfam snoRNA binding domain, fibrillarin 178 410 IPR002687 -
Cco06g1976 823 Hamap Adenylate kinase [adk]. 592 802 IPR000850 GO:0005524(InterPro)|GO:0006139(InterPro)|GO:0019205(InterPro)
Cco06g1976 823 FunFam Nucleolar protein 56 300 412 - -
Cco06g1976 823 Gene3D - 565 799 IPR027417 -
Cco06g1976 823 Gene3D - 142 299 - -
Cco06g1976 823 MobiDBLite consensus disorder prediction 434 570 - -
Cco06g1976 823 SUPERFAMILY Nop domain 164 413 IPR036070 -
Cco06g1976 823 Pfam NOP5NT (NUC127) domain 5 70 IPR012974 -
Cco06g1976 823 Pfam Adenylate kinase 596 781 - -
Cco06g1976 823 MobiDBLite consensus disorder prediction 513 539 - -
Cco06g1976 823 Coils Coil 485 515 - -
Cco06g1976 823 MobiDBLite consensus disorder prediction 434 451 - -
Cco06g1976 823 MobiDBLite consensus disorder prediction 540 557 - -
Cco06g1976 823 FunFam Adenylate kinase mitochondrial 592 802 - -
Cco06g1976 823 SMART NOSIC_2 171 223 IPR012976 -
Cco06g1976 823 ProSiteProfiles Nop domain profile. 296 414 IPR002687 -
Cco06g1976 823 FunFam Nucleolar protein 56 141 299 - -
Cco06g1976 823 CDD ADK 593 793 IPR000850 GO:0005524(InterPro)|GO:0006139(InterPro)|GO:0019205(InterPro)
Cco06g1976 823 PRINTS Adenylate kinase signature 751 766 IPR000850 GO:0005524(InterPro)|GO:0006139(InterPro)|GO:0019205(InterPro)
Cco06g1976 823 PRINTS Adenylate kinase signature 595 608 IPR000850 GO:0005524(InterPro)|GO:0006139(InterPro)|GO:0019205(InterPro)
Cco06g1976 823 PRINTS Adenylate kinase signature 768 782 IPR000850 GO:0005524(InterPro)|GO:0006139(InterPro)|GO:0019205(InterPro)
Cco06g1976 823 PRINTS Adenylate kinase signature 623 637 IPR000850 GO:0005524(InterPro)|GO:0006139(InterPro)|GO:0019205(InterPro)
Cco06g1976 823 PRINTS Adenylate kinase signature 672 688 IPR000850 GO:0005524(InterPro)|GO:0006139(InterPro)|GO:0019205(InterPro)
Cco06g1976 823 NCBIfam adenylate kinase 593 796 IPR006259 GO:0004017(InterPro)|GO:0005524(InterPro)|GO:0016776(InterPro)
Cco06g1976 823 MobiDBLite consensus disorder prediction 459 503 - -
Cco06g1976 823 Gene3D Nop domain 300 412 IPR042239 -
Cco06g1976 823 Pfam Adenylate kinase, active site lid 718 753 IPR007862 GO:0004017(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1976 K14564 - - csv:101216223 936.406
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1976 Cco-Chr6:29904947 Cco11g0384 Cco-Chr11:3840914 2.30E-30 dispersed
Cco02g1755 Cco-Chr2:30311795 Cco06g1976 Cco-Chr6:29904947 1.00E-90 transposed
Cco03g0365 Cco-Chr3:3956472 Cco06g1976 Cco-Chr6:29904947 1.20E-117 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g142 . . Bda06g00736 . . . . Bma12g01076 . . Cma10g00072 . Car10g00060 . . . . Bhi02g00536 . . . Hepe09g0060 . . Cla06g01731 Cam06g1922 Cec06g1972 Cco06g1976 Clacu06g1878 Cmu06g1820 Cre06g2635 . . Cone13ag0211 Cone19ag0200 . . . . . Blo15g00215 . . Bpe07g00883 . . . . Cmo10g00069 . . . . . . . . . . . . . . . . . . . . . Lsi06g01631 Csa01g00068 Chy02g02652 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003680 2 1 2 1 2 1 1 1 1 2 1 1 1 1 1 2 1 2 2 1 1 1 1 3 3 1 1 3 3 1 45