Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1977 ATGCAGCCAGGAAGCCATGAGTCGGAAATTGTAACTTGCTCATATCTGCTCTTTTCGTGGAGCACGAGCGAGAATCCTGACTCCTCCGCCGCCGTTCCGGCGAAAAGCTTCTCTCAAGCTTCCCGCTTCATCCCCATCATCTTCTTCCTCACTCTCTGCCCTTTCAATTCGCAATTCAAGGATTCTTTGACATTGAACAAAGTTGTTTTAGCTTATAGCGGCGGCTTGGACACATCGGTTATCGTACCATGGTTGAGGGAGAAATACGGGTGTGAGGTGGTTTGCTTCACTGCTGATGTTGGGCAAGGGGTGATGGAATTGGATGGTTTGGAAGCAAAGGCGAAAGCAAGTGGAGCTTGTCAACTTGTTGTGAAAGACCTGAGGGATGAATTCGTGGAAGACTACGTGTTTCCCTGCTTGCGAGCTGGTGCCATTTATGAAAGGAAATACTTGCTTGGAACTTCCATGGCTCGCCCTGTCATCGCCAAGGCCATGGTGGATGTTGCCAAAGAAGTTGGAGCTGATGCTGTAGCTCATGGTTGCACAGGGAAAGGAAATGATCAGGTACGGTTTGAACTCACATTCTTTGCTCTGAACCCCAAACTACGTGTTATAGCTCCCTGGAGAGAATGGGACATTACAGGAAGAGAAGATGCAATTGAATATGCCAAGAGGCATAACGTGCCAGTCCCTGTCACGAAGAAATCGATATACAGTCGAGATCGGAATATTTGGCACCTTAGCCATGAGGGTGACGTTTTGGAAGATCCTGCTAATGAGCCAAAGAAAGACATGTTCATGCTATCCGTTGATCCCGAGGATGCGCCGAACCAACCCGAATATGTTGAGATTGAAATTGTCTCAGGACTTCCTGTTGGTGTCAATGGGAAAAAGCTGTCACCAGCTTCCCTTCTCGACAAACTCAACAAAATCGGCGGGAAACACGGCATCGGCCGGGTCGACATGGTTGAAAACCGTCTCGTTGGCATGAAAAGCCGTGGTGTGTACGAAACACCAGGAGGAACCATCCTATTCACAGCTGCACGGGAACTCGAATCCTTAACACTAGACCGCGAGACCATACAAGTCAAAGACTCACTCGCCCTCAAATATGCCGAGCTGGTGTATGCAGGCCGATGGTTCGACCCACTCCGTGTAGCCATGGATGGATTCATGGAGAAGATAACCGCAACAACCACCGGAACGGTCACACTCAAACTGTACAAAGGCTCGGTGACCGTAGTCGGGCGCAAAAGTCCAAACAGCCTGTATAGGCAAGACATATCCTCATTTGAGAACGGAGATGTGTACAACCAAGCTGATGCTGCTGGATTCATTCATCTCTACGGCCTCCCAACAAGAGTCCGAGCAATGCTTGAACAAGGAATCTAA 1392 49.07 MQPGSHESEIVTCSYLLFSWSTSENPDSSAAVPAKSFSQASRFIPIIFFLTLCPFNSQFKDSLTLNKVVLAYSGGLDTSVIVPWLREKYGCEVVCFTADVGQGVMELDGLEAKAKASGACQLVVKDLRDEFVEDYVFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAKEVGADAVAHGCTGKGNDQVRFELTFFALNPKLRVIAPWREWDITGREDAIEYAKRHNVPVPVTKKSIYSRDRNIWHLSHEGDVLEDPANEPKKDMFMLSVDPEDAPNQPEYVEIEIVSGLPVGVNGKKLSPASLLDKLNKIGGKHGIGRVDMVENRLVGMKSRGVYETPGGTILFTAARELESLTLDRETIQVKDSLALKYAELVYAGRWFDPLRVAMDGFMEKITATTTGTVTLKLYKGSVTVVGRKSPNSLYRQDISSFENGDVYNQADAAGFIHLYGLPTRVRAMLEQGI 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29924032 29926703 - CcPI632755_06g019770.1 Cco06g1977 182577

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1977 463 CDD Argininosuccinate_Synthase 68 452 IPR023434 GO:0004055(InterPro)
Cco06g1977 463 Gene3D HUPs 67 237 IPR014729 -
Cco06g1977 463 FunFam Argininosuccinate synthase 239 462 - -
Cco06g1977 463 PANTHER ARGININOSUCCINATE SYNTHASE 64 460 IPR001518 GO:0000050(PANTHER)|GO:0000053(PANTHER)|GO:0004055(PANTHER)|GO:0004055(InterPro)|GO:0005524(InterPro)|GO:0005737(PANTHER)|GO:0006526(InterPro)|GO:0006526(PANTHER)
Cco06g1977 463 FunFam Argininosuccinate synthase 62 238 - -
Cco06g1977 463 Pfam Arginosuccinate synthase C-terminal domain 238 455 IPR048268 -
Cco06g1977 463 ProSitePatterns Argininosuccinate synthase signature 1. 71 79 IPR018223 GO:0004055(InterPro)|GO:0005524(InterPro)|GO:0006526(InterPro)
Cco06g1977 463 Hamap Argininosuccinate synthase [argG]. 65 461 IPR023434 GO:0004055(InterPro)
Cco06g1977 463 Gene3D Argininosuccinate synthetase, chain A, domain 2 128 418 IPR024074 GO:0004055(InterPro)
Cco06g1977 463 Gene3D Single helix bin 427 462 - -
Cco06g1977 463 ProSitePatterns Argininosuccinate synthase signature 2. 180 191 IPR018223 GO:0004055(InterPro)|GO:0005524(InterPro)|GO:0006526(InterPro)
Cco06g1977 463 Pfam Arginosuccinate synthase N-terminal HUP domain 67 229 IPR048267 -
Cco06g1977 463 SUPERFAMILY Argininosuccinate synthetase, C-terminal domain 235 461 IPR024074 GO:0004055(InterPro)
Cco06g1977 463 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 66 230 - -
Cco06g1977 463 NCBIfam argininosuccinate synthase 67 456 IPR001518 GO:0004055(InterPro)|GO:0005524(InterPro)|GO:0006526(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1977 K01940 - - csv:101215982 775.393
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0367 Cco-Chr3:3989643 Cco06g1977 Cco-Chr6:29924032 3.10E-200 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g140 . . . . . . . Bma12g01077 Cmo13g00830 Cmo18g00206 . Cma11g00044 Car10g00059 Car11g00039 Sed08g2445 Cpe20g00313 Cpe04g01606 Bhi02g00535 Tan09g2357 Cmetu12g1017 . Hepe09g0059 . . Cla06g01732 Cam06g1923 Cec06g1973 Cco06g1977 Clacu06g1879 Cmu06g1821 Cre06g2636 Cone2ag0966 Cone16ag0026 . . Lsi02g00491 Csa01g00954 Chy12g01178 Cme12g01598 . Blo15g00214 . . . . . . . Cmo10g00068 Cmo11g00044 Cma13g00797 . Car13g00646 Car18g00222 Cpe09g00969 . . . . . . . . . . . . . . . Lsi06g01632 Csa01g00067 Chy02g02653 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001306 1 3 2 2 1 3 4 2 2 3 2 2 4 2 3 5 3 2 4 3 3 2 2 2 2 3 2 3 2 2 76