Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1978 ATGCAATTAGAATTTTTGGGCGGTTCTTCCGTCCTCAGTTCACCACATTCATCTCCTTACAAGCAAAGGATGACATCCTTTGGCGCTCTTTCACTATGCGCCTGCAGCCCGCTGTTACGCCCTCATCACACAGTTCGTTCTATTTATTGTTGCAGTGGATCTCCTACAGTTTTAGGTAAAAATGTCTCGAAAGTACCTCGAAAAAGACCAGGAAGATTGGAAGGTGCTAGAAGAAGCATGGAAGACTCTGTTCAACGCAAGATGGAACAATTTTATGAAGGTTCAGATGGTCCACCTCTCCGAGTTCTTCCAATTGGTGGCCTTGGTGAAATTGGGATGAATTGTATGCTTGTTGGGAATTATGACCGCTACATCCTGATTGATGCTGGCGTCATGTTTCCTGACCATGATGAGCTTGGTGTCCAGAAAATTATACCTGATACCACATTCATCAAAAGATGGAGTCACAAAATCGAAGCTGTTGTTATTACACATGGCCATGAAGATCACATTGGTGCGTTGCCTTGGGTAATTCCCGCTTTGGATTCTCATACACCAATATATGCTTCTTCCTTTACAGTGGAGCTTATAAAAAAACGTCTGAAGGAAAATGGGATTTTTGTTCCTTCTCGACTTAAGGTATTTAAGATGAAAAAGAGATTCACAGCTGGGCCATTTGAAATAGAGCCAATTAGGGTTACCCATTCCATTCCGGATTGTTGTGGATTAGTTCTTCGATGTGCTGATGGTATAATTCTTCATACGGGAGACTGGAAGATTGATGAATCGCCATTGGATGGTAAAGTCTTCGATCGAGAAACCTTGGAAGAACTATCAAAAGAAGGAGTGACTCTTATGATGAGTGACTCAACAAATGTATTATCTCCTGGAAGGACTATTAGTGAGTCTGTGGTGGCAGATGCACTTTTAAGACGTATCTCTGCCGCTAAAGGAAGGGTCATCACGACTCAGTTTGCTTCAAATATACACCGCCTTGGAAGTGTGAAAGCAGCCGCAGATTTAACTGGTAGAAAGTTGGTATTTGTTGGCATGTCTTTACGGACATATCTGGATGCAGCCTGGAAAGATGGGAAGGCACCAATTGATCCATCGACCTTGGTAAAAGTGGAGGACATTGATGCCTATGCTCCAAAAGATCTATTGATTGTCACAACTGGCTCACAAGCAGAACCACGTGCTGCCCTTAATCTTGCATCCTATGGAAGTAGTCACTCTCTCAAACTGAGCAAGGAAGACATGATTTTGTATTCGGCCAAGGTTATTCCTGGTAACGAATCTAGAGTTATGAAAATGTTGAACCGTATATCAGAGATTGGATCAAATATAATCATGGGCAAGAATGAGTTGCTTCACACATCTGGTCATGGATATCGTGGAGAATTAGAGGAAGTACTTCAAATTGTTAAACCGCAGCATTTTTTACCCATTCATGGAGAGCTTTTATTCCTCAAGGAGCATGAACTGCTGGGCCGGTCGACAGGCATTCGGCACACAACTGTTATAAAAAATGGAGAAATGCTTGGAGTATCTCATCTAAGAAACAGAAGAGTTTTATCCAATGGTTTCACCTCTCTTGGGAGGGAGAATTTACAGTTGAAGTATAGTGATGGTGACAAAGCATTTGGATCCTCATCTGAGCTTTTCGTTGATGAGAGACTAAAGATTGCAACGGATGGCATTATAGTGGTCAGTATGGAAATCTTGCGACCTCAAAGTGTAGATGGTTCAAATGAGACTGGCATCCGAGGAAAGCTAAGGATCACTACTAGATGTTTATGGCTTGACAAGGGGAAGCTTTTAGATGCACTTCATAAAGCCGCTCATGCAGCACTTTCAAGCTGCCCGGTGAATTGTCCTCTAGCTCACATGGAAAGAACCGTGTCTGAGCTTTTGAGGAAGATGGTTAGAAAATACAGTGGTAAGAGGCCTGAAGTCATAGTCATGGCTGTGGAGAACCCTGGAGGAGTTCTATCCGAAGAGCTTGGAGCAAGGCTGTCAGGAAAGTCCAATACTGGATTTGGGATGTCAGCATTGAGAAAAGCAGTTGATGGACAACCAACTAAGAGCCACGTAAACAGCATAAGACCAGATGGAAATGACGATTTGCATTCCGAGGAGTCTCAAGGTTATTATTTGGAACCTGGAAGACTACTTCCTGAAGATGACTACGATACCTTGAGCTCGAACTTGACAGAGACACAATCCTTTGATAAGGAGGGTTTGGAGGATTTCTGGAGACCATTTATCACGCCATCCTCTCCGGCTAAAGAATTGGCAAAGGATAACGAAGGTTCTGTTCAACAATCAAAAAATATGTTGGAGATTACAAACGAACGTGAAGAAGTTAGTGACGACAAGTCACTGAAAACATCAAATTCTGACGTGAAGCCTGTGAAACGCAATAAATGGAAACCTGAGGAGATCAAGAAACTTATTAAATTGCGGGGGGAATTGCATGCCAGGTTTCAAGTGGCCAGGGGACGAATGGCATTATGGGAAGAGATATCCAATGGTATGTCGGCTAATGGAATTAATCGGAGTCCCGGACAGTGCAAATCTCTGTGGGCATCTCTGGTTCAGAAATTTGAGCAGGAAAGCAAAAGAGAAAAGAAAAGCAAGAAGAATTGGCCATACTTAGAGGAAATGAGTGCCATATTGTCTGATTCAGAGGCAGTGGCAACAAAATGA 2709 42.82 MQLEFLGGSSVLSSPHSSPYKQRMTSFGALSLCACSPLLRPHHTVRSIYCCSGSPTVLGKNVSKVPRKRPGRLEGARRSMEDSVQRKMEQFYEGSDGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAGVMFPDHDELGVQKIIPDTTFIKRWSHKIEAVVITHGHEDHIGALPWVIPALDSHTPIYASSFTVELIKKRLKENGIFVPSRLKVFKMKKRFTAGPFEIEPIRVTHSIPDCCGLVLRCADGIILHTGDWKIDESPLDGKVFDRETLEELSKEGVTLMMSDSTNVLSPGRTISESVVADALLRRISAAKGRVITTQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPIDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHSLKLSKEDMILYSAKVIPGNESRVMKMLNRISEIGSNIIMGKNELLHTSGHGYRGELEEVLQIVKPQHFLPIHGELLFLKEHELLGRSTGIRHTTVIKNGEMLGVSHLRNRRVLSNGFTSLGRENLQLKYSDGDKAFGSSSELFVDERLKIATDGIIVVSMEILRPQSVDGSNETGIRGKLRITTRCLWLDKGKLLDALHKAAHAALSSCPVNCPLAHMERTVSELLRKMVRKYSGKRPEVIVMAVENPGGVLSEELGARLSGKSNTGFGMSALRKAVDGQPTKSHVNSIRPDGNDDLHSEESQGYYLEPGRLLPEDDYDTLSSNLTETQSFDKEGLEDFWRPFITPSSPAKELAKDNEGSVQQSKNMLEITNEREEVSDDKSLKTSNSDVKPVKRNKWKPEEIKKLIKLRGELHARFQVARGRMALWEEISNGMSANGINRSPGQCKSLWASLVQKFEQESKREKKSKKNWPYLEEMSAILSDSEAVATK 902
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29934223 29945774 + CcPI632755_06g019780.1 Cco06g1978 182578

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1978 902 Pfam Beta-lactamase superfamily domain 123 259 IPR001279 -
Cco06g1978 902 Pfam Ribonuclease J, beta-CASP domain 317 442 - -
Cco06g1978 902 Gene3D - 301 451 IPR042173 -
Cco06g1978 902 Pfam Myb/SANT-like DNA-binding domain 807 892 IPR044822 -
Cco06g1978 902 PANTHER RIBONUCLEASE J 16 902 - -
Cco06g1978 902 SMART Lactamase_B_5a 112 309 IPR001279 -
Cco06g1978 902 Gene3D - 104 516 IPR036866 -
Cco06g1978 902 MobiDBLite consensus disorder prediction 786 805 - -
Cco06g1978 902 MobiDBLite consensus disorder prediction 691 715 - -
Cco06g1978 902 SUPERFAMILY Metallo-hydrolase/oxidoreductase 100 514 IPR036866 -
Cco06g1978 902 CDD RNaseJ_MBL-fold 103 514 - -
Cco06g1978 902 Gene3D - 810 871 - -
Cco06g1978 902 ProSiteProfiles Myb-like domain profile. 802 866 IPR001005 -
Cco06g1978 902 CDD GT1 808 870 - -
Cco06g1978 902 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 454 499 IPR011108 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1978 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g135 . . . . . . . . . . Cma10g00071 Cma11g00042 Car10g00058 Car11g00038 Sed08g0040 . Cpe04g01607 Bhi02g00533 Tan09g2359 Cmetu02g0049 . Hepe09g0058 . . Cla06g01733 Cam06g1924 Cec06g1974 Cco06g1978 Clacu06g1880 Cmu06g1822 Cre06g2637 . . . . . . . . . . . . . . . . . Cmo10g00066 Cmo11g00043 . . . . . . . . . . . . . . . . . . . . Lsi06g01633 Csa01g00066 Chy02g02654 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006250 1 3 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 1 3 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59568 PF12706 Lactamase_B_2 1.50E-10 CL0381 Cco TF