Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco06g1980 | ATGATCTACTTCTCCGTGTCCTTCTTACTTCTCTCAAGTTCTTTATGGGCTTTCTTTCTTCTCTATCTTTGCATCTCTAAATTCTACTGCTTCTCTAGAAAGCGCTTTTACTATTCTCCACCTTCTTACCCCTTCTTCGGTAGCTTGATTTCTTTTTACAAAAACCGGCGCCGCCTTCTGGCATGGTACACCGACCTGCTGTCCGATTCGCCGACTCAGACCATTGTGGTGCACCGGCTCGGTTCGAGAAGGACCGTTGTGACGGCTAACCCAGCCAATGTGGAGCACATGCTCAAGACCAATTTCATTAATTACCCTAAAGGAAAGCCGTTTACTGATATACTCGGCGATCTACTCGGCTGTGGCATTTTTAACGTCGACGGCGATTTGTGGTCCAGCCAACGCAAGCTCGCCAGTCATGCATTTTCCGCTAAGTCCCTAAGAGAATTCGTCGTTAAGACGCTTGAAGATGAAGTTCATCTCCGTTTGATTCCTTTGCTCAGTAACGCTGCTCGAACTAACGCCGTCATTGATTTGCAAGATGTTTTGGGAAGACTCGCTTTTGACACCGTTTGTAAGGTGACGCTGGGAACGGACGAGCAATGCTTGGACATGTCGCGTCCAATTCCAGAAATAGTAAATGCATTCGACACGGCAACGGGGATCAGTGCAAAGCGAGCAATAGCGCCACTATTTCTCACATGGAAGGCCAAGCGCATGCTCAACGTTGGCTCCGAAAAGAAGCTCAAAGAAGCGGTTCAAATGGTCCACAAATGGGTCTCCAATATCGTTCGCAATAAAAACAATAATACCCTCCATAACCATAACCAAACATACAACAATGATTTGTTATCCCGCCTCTTGTCGACCAACCACGACGAGGAAGTCGTTAGAGACATGATTGTTAGCTTCATAATGGCCGGCCGTGACACCACCTCCGCCGCCATGACATGGCTCTTCTGGTTGCTCACAAAGCACCCAAAAGTCGAACAGGCCATAATCAACGAAGCTACTTCATTGTCCGACGATTCAAAAGCCATGTCGTTGGGTTATGGTTACGAAGAATTGAAGGATATGAAGTATTTGAAAGCGTGTTTATGCGAGTCCATGCGGCTATACCCGCCAGTGGCTTGGGATTCGAAGCACGCGGCGGCAGCGGACATTCTCCCGGACGGAACTCCGGTGAGGAAAGGGGACAGAGTCACGTATTTTCCGTACGGAATGGGGAGGATGGAGGAGGTATGGGGGAAAGACCGGCTTGAATTCAAACCGGACCGGTGGTTCCAAAACGGCGAGTTGAAAACGGTCAGCCCGTTCAAGTTCCCGGTCTTTCAAGCCGGTCCGAGGATGTGCTTGGGAATGGAAATGGCGTTCATTCAGATGAAATACGTGGTGGCCACGGTTTTGAAGCGGTTTGAATTTAGACCAGCGAGTGAAAATTCTCCGGTTTTTGTCCCGTTGTTGACAGCGCATATGGCGGGTGGACTACGGGTTTATGTTAGGGAAAGGATAGAACAAAAGTCAACTATGTGGAGTTTTGATTTTATAGCATCGAGCAAGTGCAAGAAGACCGAGAGGACCGCACCTAGTCCGACGATATCTATCTCAAGCTCCCCGTCAAGTTGGAGTAATGGAGTTCTTAATCTGATTTTCATAGCAGATCTAGTGATCATGGGGCGAGCATTTGTGGTGATGGAGGGATGGATGTTTGCTGGGTTGAGGAAATGGGATGAGGTTGGCCAGAGGGAGAAGATCTCAATGGAGGCAGAGAAAGAGGTTCTTCCTACCACTGAAGCGGGTCTTAAACCGCTTCACATTCTCAAATCTACAGACCCACCTCTCTGGCTTGCTCCAAGCCCTTCCCTATCTAAAGTTGCTCGCCTTGCCTCACAGAATTTATTTTCTATGCTGAAACCATTCAGTCCTAAATCTCCATTTGATCATCTCCTGGTTGATGGATTTGATGCCGAGCAGATATGGCAACAAATTGACCTCCAATCACAACCTCTTTTGGCAAGTGTTCGCAGGGATTTGAAGCGGTTTGAGAAGAATCCAGAAGCAATTTCGAACCTGCAGGTTTCTTTGGAGGATAAGAAGAAGGTTATTCAAGAGATGGCTATAGGGTTGGAGGAAGAAAGTGATGATTTTGAAGAAGACATAAAGGAGTTTGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAATGAGGAGGATGAGGAGGGAGAAGAGGACTATGATGACAAAGAAGATGGAGACCTTGAGGAAGAGAGTGAAGATGAAGTTGAGGGTGAAGAAGGTAATGGTGGGATTGAGGATGGATTTTTAAAGATAAAGGAGCTAGAGGAGTTCATGGAGGAGGATGAGGTAAGGGAATATGGTTTACAGAAGAAGAAAGACAGTAAGAAGGAAAAGAAACAGAGGAAGGTAGAAGAAGAGTCTGAGGACGATGAAGATGATAAGCTTGGGGAGTTTGACCTCCATGGCGAAGAGGATGAAGATTCTAGCAAACTGGAAAAGGCGAGGATCCAAGTACACATTTTTGCCGTTCAGTTTTCCTTTCGCAGCACTGACCATCACCTCTACACTCTACTAAAATACGAAGACTTTTTTGGTGCTAAAAAGAAGAAGCTTGGTAGAAGAAAATCTATATTGACAACTGGATCAAGGTCTGAACTCTCAGACTCAGGTGATGAAGAGGAAGAGGAAGATAATGAAGCACATGCAGAACAGAAGTCACAAATTCTTTCAACTCATCAAAAACAACTTAAGAAGCTTCAAGCTGAAATAGAGATGATGGAGAAAGCAAATTTGGAGCCCAAAACGTGGACCATGCAGGGAGAGGTAACCGCGGCAAAAAGACCTAAGAATAGTGCTTTGGAAGTTGATCTAGATTTTGAGCACAATGTGAGACCACCACCGGTAATCACAGAAGAAGTTACAGCAACGTTGGAAGAGATGATCCAGAAAAGGATCCTTGAGGGGCGTTTTGACGAAGTTCAGAAAGCACCTAAACGGCCTACTAAAGCACCCAGAGAAATCAAAGACTTGGATGAGAATAAAAGCAAGAAAGGTCTTGGTGAAATATACGAGGAAGAGTATGTTGAAAAGACTAATTTGGCTACAGCCCCATCATCATTCACCGATGAAGCGAAGCAAGAGGCGAGCATACTTTTCAAGAAACTTTGCTCCAAGTTGGATGCTCTCTCCCATTACCACTACGCCCCAAAACCTGTCATAGAGGATATGTCTATATCGGTGAATGTCCCTGCTCTAGCAATGGAAGAGGTTGCTCCTGTTGCTGTCTCGGATGCGGCAATGCTCGCTCCAGAGGAAGTTTTTGCTGGCAAAGGTGTAATCAAAGAAGCAGCAGAACTTACACAATCCGACAGGAAGAGGAGGAGGGCCAACAAGAAAAGGAAATATAAAGCTATGGTGGCCAAAAGAGACGCAAAGAAGGCAAAAAATACTGCAGTTCCAAATGCCAATGAAAGTTGTCATGCTGCCATTCACTTTAACAAGTGCAACCTGATCACTTGA | 3564 | 45.71 | MIYFSVSFLLLSSSLWAFFLLYLCISKFYCFSRKRFYYSPPSYPFFGSLISFYKNRRRLLAWYTDLLSDSPTQTIVVHRLGSRRTVVTANPANVEHMLKTNFINYPKGKPFTDILGDLLGCGIFNVDGDLWSSQRKLASHAFSAKSLREFVVKTLEDEVHLRLIPLLSNAARTNAVIDLQDVLGRLAFDTVCKVTLGTDEQCLDMSRPIPEIVNAFDTATGISAKRAIAPLFLTWKAKRMLNVGSEKKLKEAVQMVHKWVSNIVRNKNNNTLHNHNQTYNNDLLSRLLSTNHDEEVVRDMIVSFIMAGRDTTSAAMTWLFWLLTKHPKVEQAIINEATSLSDDSKAMSLGYGYEELKDMKYLKACLCESMRLYPPVAWDSKHAAAADILPDGTPVRKGDRVTYFPYGMGRMEEVWGKDRLEFKPDRWFQNGELKTVSPFKFPVFQAGPRMCLGMEMAFIQMKYVVATVLKRFEFRPASENSPVFVPLLTAHMAGGLRVYVRERIEQKSTMWSFDFIASSKCKKTERTAPSPTISISSSPSSWSNGVLNLIFIADLVIMGRAFVVMEGWMFAGLRKWDEVGQREKISMEAEKEVLPTTEAGLKPLHILKSTDPPLWLAPSPSLSKVARLASQNLFSMLKPFSPKSPFDHLLVDGFDAEQIWQQIDLQSQPLLASVRRDLKRFEKNPEAISNLQVSLEDKKKVIQEMAIGLEEESDDFEEDIKEFDEEEEEEEEEEEEEEEEEEENEEDEEGEEDYDDKEDGDLEEESEDEVEGEEGNGGIEDGFLKIKELEEFMEEDEVREYGLQKKKDSKKEKKQRKVEEESEDDEDDKLGEFDLHGEEDEDSSKLEKARIQVHIFAVQFSFRSTDHHLYTLLKYEDFFGAKKKKLGRRKSILTTGSRSELSDSGDEEEEEDNEAHAEQKSQILSTHQKQLKKLQAEIEMMEKANLEPKTWTMQGEVTAAKRPKNSALEVDLDFEHNVRPPPVITEEVTATLEEMIQKRILEGRFDEVQKAPKRPTKAPREIKDLDENKSKKGLGEIYEEEYVEKTNLATAPSSFTDEAKQEASILFKKLCSKLDALSHYHYAPKPVIEDMSISVNVPALAMEEVAPVAVSDAAMLAPEEVFAGKGVIKEAAELTQSDRKRRRANKKRKYKAMVAKRDAKKAKNTAVPNANESCHAAIHFNKCNLIT | 1187 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 29952874 | 29966844 | - | CcPI632755_06g019800.1 | Cco06g1980 | 182580 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco06g1980 | 1187 | FunFam | Cytochrome P450 | 31 | 506 | - | - | |
| Cco06g1980 | 1187 | PRINTS | E-class P450 group IV signature | 393 | 407 | IPR002403 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco06g1980 | 1187 | PRINTS | E-class P450 group IV signature | 298 | 324 | IPR002403 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco06g1980 | 1187 | PRINTS | E-class P450 group IV signature | 451 | 469 | IPR002403 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco06g1980 | 1187 | PRINTS | E-class P450 group IV signature | 359 | 375 | IPR002403 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco06g1980 | 1187 | PRINTS | E-class P450 group IV signature | 410 | 428 | IPR002403 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco06g1980 | 1187 | Coils | Coil | 706 | 753 | - | - | |
| Cco06g1980 | 1187 | MobiDBLite | consensus disorder prediction | 795 | 846 | - | - | |
| Cco06g1980 | 1187 | Coils | Coil | 803 | 823 | - | - | |
| Cco06g1980 | 1187 | Coils | Coil | 917 | 944 | - | - | |
| Cco06g1980 | 1187 | PRINTS | P450 superfamily signature | 307 | 324 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco06g1980 | 1187 | PRINTS | P450 superfamily signature | 451 | 462 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco06g1980 | 1187 | PRINTS | P450 superfamily signature | 442 | 451 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco06g1980 | 1187 | PRINTS | P450 superfamily signature | 364 | 375 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco06g1980 | 1187 | Gene3D | Cytochrome P450 | 20 | 513 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco06g1980 | 1187 | MobiDBLite | consensus disorder prediction | 708 | 782 | - | - | |
| Cco06g1980 | 1187 | MobiDBLite | consensus disorder prediction | 894 | 928 | - | - | |
| Cco06g1980 | 1187 | Pfam | Cytochrome P450 | 40 | 482 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco06g1980 | 1187 | MobiDBLite | consensus disorder prediction | 795 | 820 | - | - | |
| Cco06g1980 | 1187 | PANTHER | CYTOCHROME P450 | 24 | 496 | - | - | |
| Cco06g1980 | 1187 | MobiDBLite | consensus disorder prediction | 821 | 835 | - | - | |
| Cco06g1980 | 1187 | SUPERFAMILY | Cytochrome P450 | 29 | 503 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco06g1980 | 1187 | CDD | CYP86A | 73 | 496 | - | - | |
| Cco06g1980 | 1187 | MobiDBLite | consensus disorder prediction | 708 | 776 | - | - | |
| Cco06g1980 | 1187 | Pfam | Mpp10 protein | 642 | 1157 | IPR012173 | GO:0005634(InterPro)|GO:0005732(InterPro)|GO:0006364(InterPro)|GO:0034457(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco05g1540 | Cco-Chr5:19408416 | Cco06g1980 | Cco-Chr6:29952874 | 6.00E-162 | dispersed | |
| Cco06g1980 | Cco-Chr6:29952874 | Cco07g0074 | Cco-Chr7:759432 | 1.40E-116 | dispersed | |
| Cco06g1980 | Cco-Chr6:29952874 | Cco10g1193 | Cco-Chr10:24577506 | 3.00E-92 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco06g1980 | K20665 | - | csv:101202989 | 869.766 |