Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1984 ATGGATCATGTTATGTTTCGAGGAATCCAAACGGCATTACTTCTTTCGATCCCGGCCTCCCGCCTTGTTAAATCCGATGGCCTCACTTTAATTTCATTCTCAACAGTAATCATCAACTGCCAAGTTTCTGCCATGGCGGAGAGCTTTCCAATTCCAAACCTTCAATTCATCACTCTCCTTCTCCTCAGTATCATCTTCCTCGCGCATAGTTACCAGATTCGGCTCGATGAACACCAGCCTCTCTCCAAAATTGATGTCTACAAGGCTACTCTTGCACTCCGAAATACCGCCTCCATTAGAGCGTCGCCGCTTGTTCTTGGCCTCAATGGCGAGGATACTGCGTGGGTGACTGTCAAGTTCATACATCCTGAACCCTCTGCAGATGATTGGATAGCTGTGTTTTCTCCTGCGAAGTTCAACACAACAACGTGTCCTAGTTCAAATAAAAGGGTTCAAACTCCATTAATCTGCTCAAGTCCGATAAAGTTCAATTATGCAAACTACTCAAATCCAAATTATGCGAAGACAGGAAAAGCTTCTTTGGTGTTCCAATTGATCAATCAGCGAGCAGATTTTTCATTTGCTTTGTTTTCAGGAGGTCTTTCAAATCCCAAACTTATTGCTGTTTCAAATCCCTTATCATTTAAGAATCCTAAAGCACCATTGTTTCCTCGCCTTGCACATGGCAAACTGTGGAATGAAATGACAATAACCTGGACAAGCGGGTATGATATAAGTGAAGCTACTCCATTTGTTGAATGGGGTCTAGAAGGGGAGACACAGACAAGATCCCCAGCTGGCACACTGACTTTTAGCAGGAACAGCATGTGTGATGCACCTGCACGTACTGTTGGTTGGCGTGATCCTGGTTTCTTTCATACAAGTTTCCTACAGAACTTATGGCCAAACTCTGTGTATACGTACAGAATGGGCCATCGCTTGCTTAGTGGATCATATATTTGGAGCAAGAGCTATTCATTCAAGTCATCACCCCATCCTGGAGAAGAATCATTACAGCGTGTCATTATATTTGGTGACATGGGGAAGGGACAACGCGATGGCTCAAACGAGTATAGCAACTATCAGCCTGGAGCATTAAACACTACTGATCAGCTCATTAAAGACTTGGACAATATAGACATTGTTTTCCATATCGGAGACCTATCTTATGCAAATGGGTATCTCTCAGAGTGGGACCAATTTACTGCACAGGTGCAGCCCATTGCATCCAGGGTCCCCTACATGGTTGCAAGTGGTAACCATGAGCGTGACTGGCCAAATACCGGGTCCTTCTATGCAAACATGGATTCAGGTGGGGAGTGCGGAGTTCCGGCGGAGACCATGTTCTATTTTCCTGCTGAAAACAGAGCAAAGTTCTGGTATTCGACAGATTATGGATTGTTCCGGTTCTGTATAGCTGACACTGAACATGACTGGCGAGAGGGCTCAGAACAGTACAGATTCATAGAGCAATGCCTTGCATCAGCGGATAGACAAAAACAACCTTGGTTGATATTTGCTGCTCATCGTGTGCTCGGCTACTCTTCCAACGACTGGTATGCGTCGCAGGGCTCATTCGAGGAACCCATGGGAAGGGAAAGCCTTCAGAAACTCTGGCAGAAGTATAGGGTCGATATTGCCTTCTATGGCCATGTCCATAACTACGAAAGAACCTGTCCAGTTTATCAGCATCAATGCGTGAATGCAGAAAAAACCCAATATTCAGGCACTATGAATGGCACAATCCACGTAGTGGTTGGTGGAGCAGGGAGTCACTTATCCGCATTCACCCAAGAGATCCCCAAATGGAGCATTTACAGAGACTTCGATTTTGGTTTCGTAAAGTTGACAGCATTCAACCGCTCCTCTCTGCTTTTCGAGTACAAGAAAAGCAGTGACGGAAAGGTTTATGATTCCTTTACCATTTCAAGGGACTACCGAGACGTCTTGGCCTGTGTTCCCGACAGTTGTCAACCCACAACTTTGGCTGCTTGA 1995 45.36 MDHVMFRGIQTALLLSIPASRLVKSDGLTLISFSTVIINCQVSAMAESFPIPNLQFITLLLLSIIFLAHSYQIRLDEHQPLSKIDVYKATLALRNTASIRASPLVLGLNGEDTAWVTVKFIHPEPSADDWIAVFSPAKFNTTTCPSSNKRVQTPLICSSPIKFNYANYSNPNYAKTGKASLVFQLINQRADFSFALFSGGLSNPKLIAVSNPLSFKNPKAPLFPRLAHGKLWNEMTITWTSGYDISEATPFVEWGLEGETQTRSPAGTLTFSRNSMCDAPARTVGWRDPGFFHTSFLQNLWPNSVYTYRMGHRLLSGSYIWSKSYSFKSSPHPGEESLQRVIIFGDMGKGQRDGSNEYSNYQPGALNTTDQLIKDLDNIDIVFHIGDLSYANGYLSEWDQFTAQVQPIASRVPYMVASGNHERDWPNTGSFYANMDSGGECGVPAETMFYFPAENRAKFWYSTDYGLFRFCIADTEHDWREGSEQYRFIEQCLASADRQKQPWLIFAAHRVLGYSSNDWYASQGSFEEPMGRESLQKLWQKYRVDIAFYGHVHNYERTCPVYQHQCVNAEKTQYSGTMNGTIHVVVGGAGSHLSAFTQEIPKWSIYRDFDFGFVKLTAFNRSSLLFEYKKSSDGKVYDSFTISRDYRDVLACVPDSCQPTTLAA 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29992528 30001278 - CcPI632755_06g019840.1 Cco06g1984 182584

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1984 664 Gene3D - 335 648 IPR029052 -
Cco06g1984 664 Gene3D - 224 333 - -
Cco06g1984 664 SUPERFAMILY Purple acid phosphatase, N-terminal domain 198 331 IPR008963 GO:0003993(InterPro)|GO:0046872(InterPro)
Cco06g1984 664 Pfam Calcineurin-like phosphoesterase 340 555 IPR004843 GO:0016787(InterPro)
Cco06g1984 664 Pfam Fn3-like domain from Purple Acid Phosphatase 99 217 IPR040974 -
Cco06g1984 664 SUPERFAMILY Metallo-dependent phosphatases 340 655 IPR029052 -
Cco06g1984 664 Pfam Purple acid Phosphatase, N-terminal domain 226 328 IPR015914 GO:0003993(InterPro)|GO:0046872(InterPro)
Cco06g1984 664 PANTHER PURPLE ACID PHOSPHATASE-RELATED 78 647 - -
Cco06g1984 664 Pfam Iron/zinc purple acid phosphatase-like protein C 580 639 IPR025733 -
Cco06g1984 664 CDD MPP_PAPs 339 644 IPR041792 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1984 K22390 - - csv:101214303 1222.61
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0798 Cco-Chr1:8390907 Cco06g1984 Cco-Chr6:29992528 1.40E-91 dispersed
Cco01g0799 Cco-Chr1:8404479 Cco06g1984 Cco-Chr6:29992528 1.30E-94 dispersed
Cco06g1984 Cco-Chr6:29992528 Cco08g1197 Cco-Chr8:23700177 1.60E-260 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g112 Blo04g00867 . . . . . Bma06g00081 . . . Cma10g00063 . Car10g00050 . . . . Bhi02g00516 . . . . . . Cla06g01740 Cam06g1930 Cec06g1980 Cco06g1984 Clacu06g1886 Cmu06g1828 Cre06g2643 . Cone16ag0269 . . . . . . . . . Bda14g01365 . . Bma03g01255 . . . . . . . . . . . . . . . . . Cla04g00983 Cam04g1023 Cec04g1147 Cco04g1211 Clacu04g1052 Cmu04g1039 Cre04g1093 Lsi06g01639 Csa01g00058 Chy02g02661 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007476 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 2 1 1 1 1 2 36