Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1989 ATGGACACCAACAATCAAGCCCAATCTTCCCCTTACCCTCCTCCTCAGGCCCCGGTCCCGGCCCCTCCCTTCCACCACCTCCTTCAGCAGCAGCAGCAACAGCTTCAGATGTTCTGGTCCTTTCAGCGCCAAGAAATCGAACAGGTTAACGATTTTAAAAACCATCAGCTTCCTCTCGCCCGCATTAAGAAGATCATGAAAGCCGACGAGGACGTGCGTATGATCTCCGCCGAGGCCCCCATTTTGTTCGCCAAGGCCTGCGAGCTCTTCATTCTTGAACTCACTATTAGGTCATGGCTCCACGCGGAGGAGAATAAGAGGCGGACATTGCAGAAGAATGATATTGCAGCTGCCATTACGAGGACCGATATCTTTGATTTCTTAGTTGATATTGTGCCTAGGGATGAGATCAAGGACGAGGCTGGGTTGGGAGGCATGGTCGGAGCTACTGCTAGCGGAGTGCCGTACTATTATCCGCCTATGGGCCAACCGGCAGGGGCTCCCGGCGGCATGATGATTGGGAGACCGGCAATGGATCCCACCGGAGTTTATGCTCAGCCGCCGTCCCAGGCATGGCAATCCGTGTGGCAGACCGCTGCTGAGGACGGTTCTTACGCGAGTGGGGGCAGCAGCGGGCAGGGTAATCTTGATGGTCAGAGCTAA 663 55.35 MDTNNQAQSSPYPPPQAPVPAPPFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDPTGVYAQPPSQAWQSVWQTAAEDGSYASGGSSGQGNLDGQS 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30047474 30052467 - CcPI632755_06g019890.1 Cco06g1989 182589

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1989 220 Pfam Core histone H2A/H2B/H3/H4 48 119 IPR007125 GO:0003677(InterPro)
Cco06g1989 220 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 32 140 IPR050568 GO:0000976(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)
Cco06g1989 220 MobiDBLite consensus disorder prediction 1 23 - -
Cco06g1989 220 Gene3D Histone, subunit A 24 134 IPR009072 GO:0046982(InterPro)
Cco06g1989 220 FunFam Nuclear transcription factor Y subunit gamma 25 134 - -
Cco06g1989 220 SUPERFAMILY Histone-fold 30 128 IPR009072 GO:0046982(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1989 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1989 Cco-Chr6:30047474 Cco09g1471 Cco-Chr9:20037578 9.70E-53 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco06g1989 . 35 219 CCAAT-HAP5 Transcription Factor Family AT3G48590 89.5 9.0e-89 323.6
Cco09g1471 . 82 225 CCAAT-HAP5 Transcription Factor Family AT3G48590 69.4 2.1e-53 206.1
Cco09g1471 . 28 180 CCAAT-HAP5 Transcription Factor Family AT1G08970 70.6 1.2e-48 190.3
Cco06g1989 . 34 133 CCAAT-HAP5 Transcription Factor Family AT1G08970 83.0 7.3e-43 171.0
Cco09g1471 . 28 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.1 2.8e-52 202.2
Cco06g1989 . 34 193 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.3 1.8e-51 199.5
Cco06g1989 . 34 192 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.7 3.6e-38 155.2
Cco06g1989 . 35 219 CCAAT-HAP5 Transcription Factor Family AT5G63470 81.4 7.4e-81 297.4
Cco09g1471 . 82 233 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.9 2.0e-49 193.0
Cco09g1471 . 46 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 82.2 2.6e-65 245.4
Cco06g1989 . 35 158 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 4.1e-50 194.9
Cco11g1357 . 1 282 CCAAT-HAP5 Transcription Factor Family AT3G12480 51.0 6.9e-62 234.6
Cco08g1160 . 1 135 CCAAT-HAP5 Transcription Factor Family AT5G43250 65.5 8.9e-38 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005355 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59569 PF00808 CBFD_NFYB_HMF 2.20E-17 CL0012 Cco TF