Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1989 ATGGACACCAACAATCAAGCCCAATCTTCCCCTTACCCTCCTCCTCAGGCCCCGGTCCCGGCCCCTCCCTTCCACCACCTCCTTCAGCAGCAGCAGCAACAGCTTCAGATGTTCTGGTCCTTTCAGCGCCAAGAAATCGAACAGGTTAACGATTTTAAAAACCATCAGCTTCCTCTCGCCCGCATTAAGAAGATCATGAAAGCCGACGAGGACGTGCGTATGATCTCCGCCGAGGCCCCCATTTTGTTCGCCAAGGCCTGCGAGCTCTTCATTCTTGAACTCACTATTAGGTCATGGCTCCACGCGGAGGAGAATAAGAGGCGGACATTGCAGAAGAATGATATTGCAGCTGCCATTACGAGGACCGATATCTTTGATTTCTTAGTTGATATTGTGCCTAGGGATGAGATCAAGGACGAGGCTGGGTTGGGAGGCATGGTCGGAGCTACTGCTAGCGGAGTGCCGTACTATTATCCGCCTATGGGCCAACCGGCAGGGGCTCCCGGCGGCATGATGATTGGGAGACCGGCAATGGATCCCACCGGAGTTTATGCTCAGCCGCCGTCCCAGGCATGGCAATCCGTGTGGCAGACCGCTGCTGAGGACGGTTCTTACGCGAGTGGGGGCAGCAGCGGGCAGGGTAATCTTGATGGTCAGAGCTAA 663 55.35 MDTNNQAQSSPYPPPQAPVPAPPFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDPTGVYAQPPSQAWQSVWQTAAEDGSYASGGSSGQGNLDGQS 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30047474 30052467 - CcPI632755_06g019890.1 Cco06g1989 182589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1989 220 Pfam Core histone H2A/H2B/H3/H4 48 119 IPR007125 GO:0003677(InterPro)
Cco06g1989 220 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 32 140 IPR050568 GO:0000976(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)
Cco06g1989 220 MobiDBLite consensus disorder prediction 1 23 - -
Cco06g1989 220 Gene3D Histone, subunit A 24 134 IPR009072 GO:0046982(InterPro)
Cco06g1989 220 FunFam Nuclear transcription factor Y subunit gamma 25 134 - -
Cco06g1989 220 SUPERFAMILY Histone-fold 30 128 IPR009072 GO:0046982(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1989 Cco-Chr6:30047474 Cco09g1471 Cco-Chr9:20037578 9.70E-53 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59569 PF00808 CBFD_NFYB_HMF 2.20E-17 CL0012 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1989 - - - 0.0