Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g2008 ATGTTCACCGTCACCGTCGTTTTCCTCCGCCGAAACCTCTGTTCAAAACTGATACATCCGTGTCTGAGAGCGAAGGCATCGGCCCTTTGTCTTACTCGGCACGCACCCATGGAAACTAGTGTTAAGCAGGAACTTATTGAACCTTTACGCGCGCAAGGAACGAGCAACAATCCCAAGGCATCAAATGTGTCTCTCTCGTTTATTGAGCTCAGTAGTGACAGCGAGTCGGATTCGGAAGATTCGGAGCAAGAAGTAGTTGACGGAATTTTGGGAGAAGGTACGCGAAGCATCGGGCTCCCAAACGGCGTCGATGGAGGGTTCTCGAAGAAGAGGAGGCTGAACGAGTTGGAAGTTGTTAAACCTCTAGGTTTTCTTCCGCCTGCGGCGCTGGACGAGAAGAATTCCATGGCGGTTATTTTGCCCTCGTCAGCAGAGGCGTGTACTGGACAAGAGATGGGGACTTCGAACGCAAATGGTTCAGCCTGCAAACAGTTTTGGAAGGCAGGAGATTATGAAGGAGCTCCTTGCAGTAATTGGGATTCATCATCGGGTGGCATGGACCACGTTAGGGTTCACCCTAAGTTTCTGCATTCTAATGCGACCAGTCATAAGTGGGCTCTGGGAGCTTTTGCCGAGTTATTGGACAACTCGTTAGATGAGGTTTCCAACGGAGCTACTCATGTTAATATAGACATGCTTGTGAATAAGAAAGACGGGACCAAAATGTTATTAGTTGAAGATAATGGTGGTGGGATGAGCCCTGACAAAATGCGTCACTGCATGTCATTGGGTTATTCAGAGAAAACCAAATTAGCAAACACCATTGGACAATATGGTAATGGTTTTAAGACCAGTACCATGAGACTTGGAGCAGATGTAATTGTATTCTCACGTTGTGGTGGACAATATGGGAAAAGTGGCACACAGAGCATTGGATTACTATCCTATACATTTTTGAGAAGCACTGGAAAGGAGGATATCGTAGTTCCAATGCTTGACTATGAAAGGAAGGGAGGTGAATGGGCCAAGATAGTGCGATCTTCTCTTAGTGATTGGAACAAAAATGTGGAAACAATCGTTCAGTGGTCTCCGTTTTCTAATGAATCTGAACTTCTCCGTCAGTTTTATTTGATGAAAGATCATGGAACTCGCATTATAATATATAACCTCTGGGAAGACGACCAGGGGCAGTTGGAGCTGGATTTTGATACTGACCAACATGATATCCAAATCAGAGGCGTCAACAGAGATGAGAAAAGTATACAAATGGCAAAAAAATTTCCCAACTCTCGGCACTTCTTGACTTATCGGCATTCTTTGAGGAGTTATGCATCCATTCTTTATTTGAGGCTCCCTCCTGGCTTTCGCATCATTCTTCGTGGGAGAGATGTAGAACACCATAACATTGTGAATGATATGATGATCTCTCAAGAGGTCACGTACAGACCTCAGCCAGGTGCTGAGGGGGTCGGCAAAGATACAAATATGGTTGCTGTTGTGACCATTGGGTTTGTGAAGGATGCAAAGCATCATATAGATGTTCAAGGATTCAATGTTTATCATAAGAATCGGCTCATCAAGCCGTTTTGGAGGCTTTGGAATGCTTCGGGAAGTGATGGTCGTGGAGTTATAGGTGTTCTAGAAGCAAATTTTGTTGAACCTGCCCACGATAAGCAGGGGTTTGAGCGAACAACTGTTCTTGCAAGACTTGAAGCACGGTTGATACAGATGCAGAAGACTTACTGGGGTTCCTACTGTCATAAGATTGGCTATGCTCCAAGACGAATTAATAAACCTGCCAATCCGTCTCCGGATAGAGAAAGTTCCCCGGATGATTATTCTTCCCAGGCTTCACCTCGATCAAAACAGAAGTTTACTACATTAAGTGGGAAGAAACCTGATAAAGTCTATTCAGGAAAAGAATCAGAGAAGTTTCAGAAAACAAAGGACTTTAGATATGGGAATGTGCATTCAAGTAAAGACAAAAACAGTAGTATGACCCCTGACCCTGAGAAATCGGGGGTAAGACCATGTTCCTCTGAGCCACCTTCACCTTCTGGACTAGAAGTTAGGGTTGATAATCCGCATGGAGGACAAGCAAACGGTACTGGCAATGAGACATTTCAGGGAAATGATGTTTCAATGACAATGAAGGCGTCTTCAAATGGAGGTGTCAGTAAAGCTCAGCAAGTTGGATTGGGTAGAAGAGGACCCCAATTGAAGGGAGGAGATGTAAACGATAGCGAGCATTCCCTTTCAAGTTCCGATTTCCACATGCTACAGCAGTTGAAGGAAGAAAATAAAGAATTGAAGGAGAGATTACAGAGAAAGGAAGCTGATCACGACAAATCGCAGCATGAAAGAGAGAGGTGCAAATCACTTGAGGCTCAGCTTAAAGCAGCAGAGCTTAAAATTGAGGAATTGAATAAAGAACAAGAAAGCCTAATAGATATTTTCTCTGAAGAGAGAGATCGAAGAGAAACCGAGGAGCGAAATCTGCGAAAAAAGCTTCAGAGTAGTAAAAGTAGATTTAGGAATGGCGCATATGGTGTTCCTGCAAGGAACGATGTTCCAAGGCATCTACAGCATCCAGAGCAGATCCCCTAA 2607 44.3 MFTVTVVFLRRNLCSKLIHPCLRAKASALCLTRHAPMETSVKQELIEPLRAQGTSNNPKASNVSLSFIELSSDSESDSEDSEQEVVDGILGEGTRSIGLPNGVDGGFSKKRRLNELEVVKPLGFLPPAALDEKNSMAVILPSSAEACTGQEMGTSNANGSACKQFWKAGDYEGAPCSNWDSSSGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVSNGATHVNIDMLVNKKDGTKMLLVEDNGGGMSPDKMRHCMSLGYSEKTKLANTIGQYGNGFKTSTMRLGADVIVFSRCGGQYGKSGTQSIGLLSYTFLRSTGKEDIVVPMLDYERKGGEWAKIVRSSLSDWNKNVETIVQWSPFSNESELLRQFYLMKDHGTRIIIYNLWEDDQGQLELDFDTDQHDIQIRGVNRDEKSIQMAKKFPNSRHFLTYRHSLRSYASILYLRLPPGFRIILRGRDVEHHNIVNDMMISQEVTYRPQPGAEGVGKDTNMVAVVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNASGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKTYWGSYCHKIGYAPRRINKPANPSPDRESSPDDYSSQASPRSKQKFTTLSGKKPDKVYSGKESEKFQKTKDFRYGNVHSSKDKNSSMTPDPEKSGVRPCSSEPPSPSGLEVRVDNPHGGQANGTGNETFQGNDVSMTMKASSNGGVSKAQQVGLGRRGPQLKGGDVNDSEHSLSSSDFHMLQQLKEENKELKERLQRKEADHDKSQHERERCKSLEAQLKAAELKIEELNKEQESLIDIFSEERDRRETEERNLRKKLQSSKSRFRNGAYGVPARNDVPRHLQHPEQIP 868
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30144082 30159371 + CcPI632755_06g020080.1 Cco06g2008 182608

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g2008 868 MobiDBLite consensus disorder prediction 821 868 - -
Cco06g2008 868 MobiDBLite consensus disorder prediction 761 791 - -
Cco06g2008 868 Pfam Morc6 ribosomal protein S5 domain 2-like 438 582 IPR041006 -
Cco06g2008 868 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 208 410 IPR036890 -
Cco06g2008 868 Coils Coil 757 825 - -
Cco06g2008 868 FunFam MORC family CW-type zinc finger protein 4 192 396 - -
Cco06g2008 868 MobiDBLite consensus disorder prediction 634 657 - -
Cco06g2008 868 MobiDBLite consensus disorder prediction 746 760 - -
Cco06g2008 868 MobiDBLite consensus disorder prediction 821 837 - -
Cco06g2008 868 MobiDBLite consensus disorder prediction 594 791 - -
Cco06g2008 868 Gene3D - 193 410 IPR036890 -
Cco06g2008 868 PANTHER ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. 134 815 IPR045261 GO:0005634(PANTHER)|GO:0016887(InterPro)
Cco06g2008 868 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 208 328 - -
Cco06g2008 868 MobiDBLite consensus disorder prediction 602 626 - -
Cco06g2008 868 MobiDBLite consensus disorder prediction 698 728 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g2008 K24135 - - csv:101222073 1366.29
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g2008 Cco-Chr6:30144082 Cco07g1614 Cco-Chr7:30199605 2.60E-194 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g69 . . . . . . . . . . . Cma11g00020 . Car11g00019 . . Cpe04g01628 Bhi02g00471 . . . Hepe09g0031 . . Cla06g01760 Cam06g1953 Cec06g2003 Cco06g2008 Clacu06g1911 Cmu06g1851 Cre06g2664 . . Cone13ag0239 . . . . . . . . Bda14g01346 . Bpe15g00232 Bma03g01239 . . . Cmo11g00020 . . . . . . . . . . . . . . . . . . . . Lsi06g01658 Csa01g00034 . Cme02g02086
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002795 1 2 1 1 1 2 1 2 2 2 2 2 1 2 3 1 2 1 1 2 2 1 2 3 2 1 2 4 3 2 54