Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g2020 ATGGCGACCTCCAAAGAGCACATTGAAGATATCAGGAGAAGAAAGTTTTCGATTGGTGGACCGGCGAACCCCTTAACCCAGGATTTTCATCATGCTGTTGGCAACCTTTCTGCGGAGCTTTACGCCAAGGACGTTCACTTTCTCATGGAGCTTATTCAGAATGCTGAAGATGACGAGTATTCCACCTCCGTAAAACCCTCCTTCGAGTTCATTGTAACATCTCGAGACGTCACCCAAACTGGAGCTTCTACCACGCTTATTATTTTCAACAACGAGACTGGCTTTTCTTCTAATAACATCGACTCCATTTGTAGCGTTGGCCGCTCCACCAAAACCAACAAGAGGAAACGCGGTTATATTGGGGAGAAAGGCATTGGATTCAAAAGTGTTTTTCTAGTTACTTCTCAGCCTTACATATTCAGCAATGGATATCAGATACGTTTCAATGAACAGCCTTGCCCAGATTGTGGTGTTGGCTACGTTGTTCCCGAGTGGGTTGAAGAGGATCCAGTTCTTTCCAACATTAAGAAACTTTATGGTCACCATTCTGAACTCCCAACAACAACCATTGTTTTGCCCTTGAAGGCTGACAAGATCAAATCTGTCAAGCAGCAGCTTTCAAGCATTCACCCCGAAATCCTATTGTTTCTTTCAAAAATTAAGCAGCTTTCATATAAGGAAGCTAATGAGGATCCCAAGTCCAACGCTGAAAGTGCAATTGCTATTTTCAGTGAAACAAACTTTCTTATGAGGAAGAACATTGACGCCGAGTCCTACTCCCTCCATTTCTCTTCCTTGGAAAATGATCGTGGAGTTAATAGCCAATGCTGCTACTACATGTGGAAGCAGAAGTTTCCAGTCAAGGAGGAAAACAGAGTGAAAGCGAGGATGGGAGTGGAGGAATTGGTGATCACATTGGCATTTCCAAATGGGGAGCGTCTCAGTCGAGGAGTAAAGACTACGGATGAAGCTCCCTTGCCTTCTTTGGCCCATTTGTTCAACTTCTTGCCCATCATTTCCTCATCCTATGACAAGTTGAATGTTGTGAGGGATTTAATCAAAGAAAAGTTGCTTGAAGAACATATCCTTCCTGGTCATTCATTCTTGAAGAAGCAGAGGTTCTTCCACAAACCTTGTGAGGTGGCTAGAATTCTGCCGGCCTTCTGGAATATATTAACGAAGGCACATGAGCAAGGGTTAAGTTTGCTTAATCTATCATCCCATGGGAAGTACATTTTAAGTTCGTCACTCGATATACAGGAATATCATCAGGTTTTGAGTTTCCTTGACGTGAAACTAGTTGATGATGAATGGTATGCAAAGTGCCTACTGGGTACTAACATTGTGGAGGGTGTGTCTGATGATGTTTATGTCGAGCTTCTACAATTTGTTGCATATAACTGGAGTTCAAGATTTCATGTTGCAAACATGAAGAACATACCACTTATAAGATATGTTGATCTTGATGGGAATGTTTCTCTGCGTAGTGTAAATCAATTCACTCAGTCTTGTGGCAGAAAGGTGCACCTTGCTTATCCTGAACATCTATCATGGCTTAATAAATTGAACATAGAATTCAAATTTGTTGCCAGGCGTTTTTTTATGCCAGAAAGCACGCAGAAGTGCATCAGGTCATGTCCTAGGAAAGATATGTTGTTGCAGTGGCTTCAAGAGCATGCGAATGTTGATACCATCAGCGTCTTTCAATTTGCAAAACTCCTTGCAAATTCTCTTGGTAACAATCCAAAGCACATAATTATGTATGTTCACTTCCTATACCACTCATTGTCGAAAAACTATCTTAAAAATGTGGACATCACGTCTCTGTGCAGTGCTATGCCAGTGGTAGACAAATATGGTGCTGTCATCAAACACAATCAAAAGCTTCTCATCCCAGCAGGTGGTAGTAAATGGGCAGAATTGTTTGATTCAAATCCCTGGGAAAATGATGGCTTCGTTGAGTTGGGAGGAGATTACATTAGCCCGGTCTATTTTGCTGGTGAATCTATAACTAGAGAGCAGCTCACTGATTTTCTCAGAGCACATATCGGTGCTTTTGATATCCCTGATATATCTCCTCCCAACCCAGAAGTTTCTGTTGTTTCTTCACCACTTACTGTGCAGAATGTGATTTTGCTATTAGATTGGATCCGTAGCTTGAAAACTAGAAGGGTTTCCATCCCTTGCAAGTTTTTGAAATGCATAAAGGAAGGTTGCTGGCTAAGAGTTACTGTGAATGGATCTCCTGGTTATAGACCACCCTCGGAGTCTTTTGATCTCTCCTTGTTGTGTACAAGTATTTTGGAAAATGGGTCAATTCTGGTGGACATCCCGCTGATTGATCACAAATTCTACGCTGATGGGTTGCAGGGCTATGAGGAGGAGCTGAGAACTATTGGTGTCATGTTTGAAAACACTGAAGTTCTAGACTTTATTGGGAATCAGCTCACGTCAGCAGCGACTGTATTAGGTTTGAAAAGAGAAAATGTCTTCAACATATTACAATTCATCCGGTTTTTGGAAAAACGGTACTGTGGTGATAACTTTATTGCTAGCATGAGAAAAGGGACATGGCTTAAGACACATCATGGTTATACCTCTCCAGTAGGATCGGTGTTGTACAGTAAGGAGTGGGAGGCAGCTTCGGTTCTTCGCAACATCCCTTTTATTGACGAGGATTACTATGGTGATGAGATACGTTCATTCCGGGAGGAACTTAAGTCTCTTGGTGTGGTGGTTGACTTTCTGGGAGTCTCCCAACTTGTGAAATGCGTCAAGACTAATCTAGGCTACAGACCTCCTGGTGAATGTTACTTATCAGACCATTCCTGGGCTTCCATTCTGCAGGTCTTTAGGGATTTCCCTCTAGTTGATTGTGAGTTCTATGGCAGCCAGATCTTTTCTTACAAGTGGGAATTAAAAAAAATGGGAGTGTTGGTCGATTTTGAGGAAGCAGTCAAAGCATTTTCTAAAAAATTCAGGGAACATGTGGTTACAAGTTCTCTAACAAAGGAAAGCGCGATATTGTTTCTGTCAAGCTTCAAACAGTTCAGAGTGAGAAAAGAGTTTCCTTCGGGTCTTGAGAAGCTCATTTGTGAGTTGAAGTGGTTGCGGACTCGACTTGGTGATCATACATCTCCTAAAAATTGCATATTGTATGATCCAAGTTGGGGATCTGTATCTTCAATTGCTCTCCTCCCATTTATTGATGATAGTACAAACTACTACGGAAATCACATTCATGAATACGAAGAAGAGTTGAAGAATATGGGAGTTATTACTGATCTTAAAGATGGTGCTCATATGGTTGCTGCTGGGCTTTGTCTTCCACAAAATCCTGTTGTCATTACTTCTGAAAATGTGCTTTCACTTTTAGGCTGCATTCGGATTTTGTTGGAGAAGAAATATTCCTTTTCAGATGATTTCTATAGAAAGGTCTCGCAAAGATGGTTGAAGACTTCTTTTGGTTACAGGTCTCCGAAAGAGAGTTTGCTCTTCACTCCTAAATGGAGTTCTTATCTGAAGCCTACTGATGGGCCTTTTATTGACGTAGAATTTTACACATTTGACATCAAGTTATATGAAAAGGAGCTCAAAGAAATAGGGGTGATAGTTGATTTGGACCATGGATGTCAACTAGTGTCAAGTTTTCTAGACTTTCATGGCGAGTCTTCCACTATCATACGAATGTATACTTATTTGAGTGCATTCAATTGGGAGCCAGACACTAAAGTTGCCAGAAGGATTTGGGTAGCTGATGGAAATAATAATGGACAGTGGATCAACCCAGAAGAGTGTGCACTTTCTGACAAAAAAGACTATTTTGGTTCGGAGTTGACAGTTCTAGAGAGGTACTATAAACAAGATTTACTCAATTTCTTTTTTAAAGTCTTTCAAGTAAGAAACAGCCCTTCAATCGACGATTACTGCAAACTCTGGAGAGGTTGGGAAAGTATTCAAGATGGACTTTCTCATGACAAGTACTTTAAGTTTTGGAAATATGTTACAGAGCACTGTAATTCAAAAAATGAGCAAACTTTCGCTGACGCCATTACAAAAGTGCCTACAATGTCTGGCTCGGATGGAGTTGTTTTGTTTGATAAGCGTGACATTTTTATTGCCGATGATCTTCAATTGAAGAATTTATTTGAACGAACGTCTCCGCATACAATATTTGTATGGTATCCTCAGCCAAGTTCACTTTCCTTGCCTCTGGCAAGGTTGTTGGAAGTTTATAAGAACATCGGGGTGCGGAATATCTCTGAGTCAGTTGAGAGAATAGAGAGCACCATAGTTGGTGGAGTCGGGATCAAGTATGTGAATCCGAATGACATTTCAATTGGAAGAGGTCTGGTGCGTCTCATTCTTGGTTTTCTAGCAGACCCTGCTAAGATGATTCAAGCAGAAAAAAGGCATGAAATTGTTGGATGCCTCCTCAATCTTATTGTTGTTGAGATTGGAGAACCTGTCATGATACACTATAGTTTATCCCTAACTTCAGGGGAGGTCATCAACGCTAATGCAACCCAGTTGATGCGTTGGGAAAGGGAGAGTTCAAAGTTGTTCACCCAAAAAAGGGTAATGTCAGGTGGTCATAAGGAGATGATAGAATTGGCCTTCTTGCTGAATTTCGATGACCAATCTGTTAGTCTCATCATGGATTCCAAAAATCTTCAAATCTTCAAGGAGGATGAGGACTTCCTCTCTTCTGCCTTCACTGACCAATCCAAGTTACAAAATGAAATTGCTGTGTAA 4755 41.11 MATSKEHIEDIRRRKFSIGGPANPLTQDFHHAVGNLSAELYAKDVHFLMELIQNAEDDEYSTSVKPSFEFIVTSRDVTQTGASTTLIIFNNETGFSSNNIDSICSVGRSTKTNKRKRGYIGEKGIGFKSVFLVTSQPYIFSNGYQIRFNEQPCPDCGVGYVVPEWVEEDPVLSNIKKLYGHHSELPTTTIVLPLKADKIKSVKQQLSSIHPEILLFLSKIKQLSYKEANEDPKSNAESAIAIFSETNFLMRKNIDAESYSLHFSSLENDRGVNSQCCYYMWKQKFPVKEENRVKARMGVEELVITLAFPNGERLSRGVKTTDEAPLPSLAHLFNFLPIISSSYDKLNVVRDLIKEKLLEEHILPGHSFLKKQRFFHKPCEVARILPAFWNILTKAHEQGLSLLNLSSHGKYILSSSLDIQEYHQVLSFLDVKLVDDEWYAKCLLGTNIVEGVSDDVYVELLQFVAYNWSSRFHVANMKNIPLIRYVDLDGNVSLRSVNQFTQSCGRKVHLAYPEHLSWLNKLNIEFKFVARRFFMPESTQKCIRSCPRKDMLLQWLQEHANVDTISVFQFAKLLANSLGNNPKHIIMYVHFLYHSLSKNYLKNVDITSLCSAMPVVDKYGAVIKHNQKLLIPAGGSKWAELFDSNPWENDGFVELGGDYISPVYFAGESITREQLTDFLRAHIGAFDIPDISPPNPEVSVVSSPLTVQNVILLLDWIRSLKTRRVSIPCKFLKCIKEGCWLRVTVNGSPGYRPPSESFDLSLLCTSILENGSILVDIPLIDHKFYADGLQGYEEELRTIGVMFENTEVLDFIGNQLTSAATVLGLKRENVFNILQFIRFLEKRYCGDNFIASMRKGTWLKTHHGYTSPVGSVLYSKEWEAASVLRNIPFIDEDYYGDEIRSFREELKSLGVVVDFLGVSQLVKCVKTNLGYRPPGECYLSDHSWASILQVFRDFPLVDCEFYGSQIFSYKWELKKMGVLVDFEEAVKAFSKKFREHVVTSSLTKESAILFLSSFKQFRVRKEFPSGLEKLICELKWLRTRLGDHTSPKNCILYDPSWGSVSSIALLPFIDDSTNYYGNHIHEYEEELKNMGVITDLKDGAHMVAAGLCLPQNPVVITSENVLSLLGCIRILLEKKYSFSDDFYRKVSQRWLKTSFGYRSPKESLLFTPKWSSYLKPTDGPFIDVEFYTFDIKLYEKELKEIGVIVDLDHGCQLVSSFLDFHGESSTIIRMYTYLSAFNWEPDTKVARRIWVADGNNNGQWINPEECALSDKKDYFGSELTVLERYYKQDLLNFFFKVFQVRNSPSIDDYCKLWRGWESIQDGLSHDKYFKFWKYVTEHCNSKNEQTFADAITKVPTMSGSDGVVLFDKRDIFIADDLQLKNLFERTSPHTIFVWYPQPSSLSLPLARLLEVYKNIGVRNISESVERIESTIVGGVGIKYVNPNDISIGRGLVRLILGFLADPAKMIQAEKRHEIVGCLLNLIVVEIGEPVMIHYSLSLTSGEVINANATQLMRWERESSKLFTQKRVMSGGHKEMIELAFLLNFDDQSVSLIMDSKNLQIFKEDEDFLSSAFTDQSKLQNEIAV 1584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30217753 30223205 - CcPI632755_06g020200.1 Cco06g2020 182620

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g2020 1584 Gene3D - 26 215 IPR036890 -
Cco06g2020 1584 PANTHER WU:FJ29H11 319 1572 IPR052957 -
Cco06g2020 1584 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 31 219 IPR036890 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g2020 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g2017 Cco-Chr6:30206177 Cco06g2020 Cco-Chr6:30217753 1.70E-27 proximal
Cco06g2018 Cco-Chr6:30206559 Cco06g2020 Cco-Chr6:30217753 2.20E-239 proximal
Cco06g2019 Cco-Chr6:30210161 Cco06g2020 Cco-Chr6:30217753 5.00E-128 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g54 . . . . . . . . . . Cma10g00035 . Car10g00025 . Sed12g2539 . . Bhi02g00645 Tan09g2414 Cmetu02g0435 . . . . Cla06g01770 Cam06g1962 Cec06g2013 Cco06g2020 Clacu06g1920 Cmu06g1861 Cre06g2674 . . . . . . . . . . . . . . . . . Cmo10g00031 . . . . . . Cpe18g00925 . . . . . . . . . . . . . . Lsi06g01667 Csa01g00024 Chy02g02689 Cme02g02096
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003517 0 3 0 0 0 2 1 4 2 1 2 2 1 1 2 1 2 1 1 2 1 1 1 2 2 2 2 4 1 3 47