Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco06g2028 | ATGGGTGTGTCAAAAGATGGGCAACGACAATCTCTGGTGCCAAGCTTTGTGTATTCTGGCAACAGGGGATGTTTCCAAACCCAAACAGTGGTTAGGCGCTTCCCAATTGAAGCCCCGAAAGAGAATATAAAGATGTATTCACCGGCCTTCTACGCGGCTTGCACAGCAGGCGGCATTTTGAGTTGTGGACTCACCCACATGGCTGTCACCCCCCTCGATCTCGTCAAGTGCAACATGCAGATCGACCCAGCAAAGTACAAGAATATCTCGTCTGGTTTTGGAATTCTGCTAAAGGAGCAGGGAGTGAAAGGGTTCTTCCGGGGTTGGGTGCCAACGTTGCTTGGTTACAGTGCTCAGGGTGCCTGCAAGTTCGGATTTTACGAGTTCTTCAAGAAGTACTATTCTGATATGGTTGGAACAGAGAATGCAGTCAAGTACAAAACTTTCATATACCTTGCTGGCTCAGCATCTGCAGAAGTGATTGCCGATGTCGCTCTCTGCCCCATGGAGGCCGTCAAAGTTCGTGTCCAGACTCAACCTGGCTTTGCTCGGGGTTTGTCAGATGGCCTTCCAAAGTTTGTCAAGTCTGAGGGTGCTCTTGGCCTCTACAAAGGTCTGGTTCCTCTTTGGGGACGTCAGATTCCATATACCATGATGAAATTTGCTTCTTTCGAAACAATTGTTGAGATGCTTTACAAGTATGCCATCCCAACGCCAAAAGAACAGTGTAGCAAATCTCTGCAGCTTGGAGTGAGCTTTGCCGGAGGGTACGTGGCCGGCGTCCTCTGTGCTGTGGTCTCCCACCCAGCCGACAATCTTGTCTCTTTTCTCAATAATGCCAAGGGTGCAACTGCTGGGGATGCTGTCAAGCAGCTGGGAGTATGGGGTCTCTTCACTCGTGGCCTTCCGCTTCGGATTGTTATGATTGGAACTCTTACTGGGTCGCAATGGGGTATATACGACCCGTTCAAAGTTTTCGTTGGACTGCCAACAACTGGTGGCGCTACCCCTGCCCCTGCCGCTAGCAAGTGA | 1032 | 50.39 | MGVSKDGQRQSLVPSFVYSGNRGCFQTQTVVRRFPIEAPKENIKMYSPAFYAACTAGGILSCGLTHMAVTPLDLVKCNMQIDPAKYKNISSGFGILLKEQGVKGFFRGWVPTLLGYSAQGACKFGFYEFFKKYYSDMVGTENAVKYKTFIYLAGSASAEVIADVALCPMEAVKVRVQTQPGFARGLSDGLPKFVKSEGALGLYKGLVPLWGRQIPYTMMKFASFETIVEMLYKYAIPTPKEQCSKSLQLGVSFAGGYVAGVLCAVVSHPADNLVSFLNNAKGATAGDAVKQLGVWGLFTRGLPLRIVMIGTLTGSQWGIYDPFKVFVGLPTTGGATPAPAASK | 343 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 30258230 | 30259671 | - | CcPI632755_06g020280.1 | Cco06g2028 | 182628 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco06g2028 | 343 | FunFam | Phosphate carrier protein, mitochondrial | 49 | 327 | - | - | |
Cco06g2028 | 343 | Pfam | Mitochondrial carrier protein | 147 | 234 | IPR018108 | - | |
Cco06g2028 | 343 | Pfam | Mitochondrial carrier protein | 51 | 136 | IPR018108 | - | |
Cco06g2028 | 343 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 146 | 230 | IPR018108 | - | |
Cco06g2028 | 343 | PANTHER | SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED | 34 | 335 | IPR044677 | GO:0005315(InterPro)|GO:0005315(PANTHER)|GO:0031305(PANTHER)|GO:0035435(PANTHER)|GO:1990547(InterPro) | |
Cco06g2028 | 343 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 49 | 133 | IPR018108 | - | |
Cco06g2028 | 343 | Gene3D | Mitochondrial carrier domain | 49 | 327 | IPR023395 | - | |
Cco06g2028 | 343 | SUPERFAMILY | Mitochondrial carrier | 52 | 321 | IPR023395 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g1465 | Cco-Chr5:17548102 | Cco06g2028 | Cco-Chr6:30258230 | 3.80E-150 | dispersed | |
Cco06g2028 | Cco-Chr6:30258230 | Cco09g1228 | Cco-Chr9:12497437 | 1.30E-11 | dispersed | |
Cco06g2028 | Cco-Chr6:30258230 | Cco09g1226 | Cco-Chr9:12476630 | 9.90E-12 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco06g2028 | K15102 | - | csv:101220423 | 608.986 |