Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g2028 ATGGGTGTGTCAAAAGATGGGCAACGACAATCTCTGGTGCCAAGCTTTGTGTATTCTGGCAACAGGGGATGTTTCCAAACCCAAACAGTGGTTAGGCGCTTCCCAATTGAAGCCCCGAAAGAGAATATAAAGATGTATTCACCGGCCTTCTACGCGGCTTGCACAGCAGGCGGCATTTTGAGTTGTGGACTCACCCACATGGCTGTCACCCCCCTCGATCTCGTCAAGTGCAACATGCAGATCGACCCAGCAAAGTACAAGAATATCTCGTCTGGTTTTGGAATTCTGCTAAAGGAGCAGGGAGTGAAAGGGTTCTTCCGGGGTTGGGTGCCAACGTTGCTTGGTTACAGTGCTCAGGGTGCCTGCAAGTTCGGATTTTACGAGTTCTTCAAGAAGTACTATTCTGATATGGTTGGAACAGAGAATGCAGTCAAGTACAAAACTTTCATATACCTTGCTGGCTCAGCATCTGCAGAAGTGATTGCCGATGTCGCTCTCTGCCCCATGGAGGCCGTCAAAGTTCGTGTCCAGACTCAACCTGGCTTTGCTCGGGGTTTGTCAGATGGCCTTCCAAAGTTTGTCAAGTCTGAGGGTGCTCTTGGCCTCTACAAAGGTCTGGTTCCTCTTTGGGGACGTCAGATTCCATATACCATGATGAAATTTGCTTCTTTCGAAACAATTGTTGAGATGCTTTACAAGTATGCCATCCCAACGCCAAAAGAACAGTGTAGCAAATCTCTGCAGCTTGGAGTGAGCTTTGCCGGAGGGTACGTGGCCGGCGTCCTCTGTGCTGTGGTCTCCCACCCAGCCGACAATCTTGTCTCTTTTCTCAATAATGCCAAGGGTGCAACTGCTGGGGATGCTGTCAAGCAGCTGGGAGTATGGGGTCTCTTCACTCGTGGCCTTCCGCTTCGGATTGTTATGATTGGAACTCTTACTGGGTCGCAATGGGGTATATACGACCCGTTCAAAGTTTTCGTTGGACTGCCAACAACTGGTGGCGCTACCCCTGCCCCTGCCGCTAGCAAGTGA 1032 50.39 MGVSKDGQRQSLVPSFVYSGNRGCFQTQTVVRRFPIEAPKENIKMYSPAFYAACTAGGILSCGLTHMAVTPLDLVKCNMQIDPAKYKNISSGFGILLKEQGVKGFFRGWVPTLLGYSAQGACKFGFYEFFKKYYSDMVGTENAVKYKTFIYLAGSASAEVIADVALCPMEAVKVRVQTQPGFARGLSDGLPKFVKSEGALGLYKGLVPLWGRQIPYTMMKFASFETIVEMLYKYAIPTPKEQCSKSLQLGVSFAGGYVAGVLCAVVSHPADNLVSFLNNAKGATAGDAVKQLGVWGLFTRGLPLRIVMIGTLTGSQWGIYDPFKVFVGLPTTGGATPAPAASK 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30258230 30259671 - CcPI632755_06g020280.1 Cco06g2028 182628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g2028 343 FunFam Phosphate carrier protein, mitochondrial 49 327 - -
Cco06g2028 343 Pfam Mitochondrial carrier protein 147 234 IPR018108 -
Cco06g2028 343 Pfam Mitochondrial carrier protein 51 136 IPR018108 -
Cco06g2028 343 ProSiteProfiles Solute carrier (Solcar) repeat profile. 146 230 IPR018108 -
Cco06g2028 343 PANTHER SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED 34 335 IPR044677 GO:0005315(InterPro)|GO:0005315(PANTHER)|GO:0031305(PANTHER)|GO:0035435(PANTHER)|GO:1990547(InterPro)
Cco06g2028 343 ProSiteProfiles Solute carrier (Solcar) repeat profile. 49 133 IPR018108 -
Cco06g2028 343 Gene3D Mitochondrial carrier domain 49 327 IPR023395 -
Cco06g2028 343 SUPERFAMILY Mitochondrial carrier 52 321 IPR023395 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1465 Cco-Chr5:17548102 Cco06g2028 Cco-Chr6:30258230 3.80E-150 dispersed
Cco06g2028 Cco-Chr6:30258230 Cco09g1228 Cco-Chr9:12497437 1.30E-11 dispersed
Cco06g2028 Cco-Chr6:30258230 Cco09g1226 Cco-Chr9:12476630 9.90E-12 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g2028 K15102 - csv:101220423 608.986