Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g2030 ATGCTTTCTTCAACAAGGAAGACCATGGCAATGGCTGCTCTTATTCTTCATCTTTGCATTTACAAGGAGGTCGACTCCTCTAATGCTCATTCTGACAAGATTGTTAGACTTCCAGGACAGCCCCCTGTGGGGTTCCATCAGTTTTCAGGTTATATTCATGTAGATGAACAAAGGCACAGAGCACTGTTTTACTACTTCGTTGAAGCAGAAATTGACCCTTCTTCTAAGCCTTTGGTTCTCTGGCTGAATGGAGGGCCTGGTTGTTCTTCCCTGGGAGTTGGGGCGTTCTCAGAAAATGGACCATTTAGGCCAAACGGGGAGGTTTTAGCGGAAAATGAATATAGCTGGAACCGAGTAGCAAACATGTTGTACTTAGAGACACCCGCAGGAGTTGGGTTCTCTTATGCTAATGATACCACTTCTCATGGGACAATGGATGATGAGGCCACAGCAAAAGATAATCTCATATTCTTGCAAAGGTGGTTCAATCAGTTCCCTCATTACAAGCATAGAGATCTATTTCTAACAGGAGAGAGTTATGCAGGCCATTACATTCCTCAGCTGGCAAGGCTTATGACTGAATTGGACAGGAAGGAGAAGTTAGTTAATCTGAAGGGAATTGCCCTAGGGAATCCAGTTTTAGAGTATGCGACAGACTTGAATTCAAGGGCAGAATTCTTTTGGTCACATGGATTAATATCAGACTCCACTTACAGAATGTTCACTGCTGCTTGTAACTATTCCCGATATGTTAGTGAGTACTACAGAGACTCAATCTCGGAGGTTTGTTTGCGGGTGATGACCCAAGTCAACAAAGAAACCAGTAAATTCGTGGACAAATATGACGTTACTCTTGATGTCTGCATTCCTTCAGTGCTCTCGCAGTCCAAGTACTTAAGCCCACAGCATGTGCGAGAGAGGATAGATGTTTGCATTGAAGATGAAACCGTTGAATATCTGAACCGAGAGGATGTGAAAAAGGCTCTTCATGCCCGTCTCGTCGGAGTCAACAAGTGGGCTGCTTGCAGCGAAGTTCTGGACTATGAGCTTCTCAACCTGGAAATTCCAACCATCTCCATTGTTGGGTCACTTGTCAAAGCGGGCATACGAGTCTTGATCTACAGTGGAGATCAGGATTCAGTAATTCCATTGATGGGGAAAGCAGGTTGCAGGTTGGACTCAAGTTTATGGCAATATCCTTTCGTTTGCGACCATTCGAGGTGCCTCTCATGA 1233 44.61 MLSSTRKTMAMAALILHLCIYKEVDSSNAHSDKIVRLPGQPPVGFHQFSGYIHVDEQRHRALFYYFVEAEIDPSSKPLVLWLNGGPGCSSLGVGAFSENGPFRPNGEVLAENEYSWNRVANMLYLETPAGVGFSYANDTTSHGTMDDEATAKDNLIFLQRWFNQFPHYKHRDLFLTGESYAGHYIPQLARLMTELDRKEKLVNLKGIALGNPVLEYATDLNSRAEFFWSHGLISDSTYRMFTAACNYSRYVSEYYRDSISEVCLRVMTQVNKETSKFVDKYDVTLDVCIPSVLSQSKYLSPQHVRERIDVCIEDETVEYLNREDVKKALHARLVGVNKWAACSEVLDYELLNLEIPTISIVGSLVKAGIRVLIYSGDQDSVIPLMGKAGCRLDSSLWQYPFVCDHSRCLS 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30268320 30270564 + CcPI632755_06g020300.1 Cco06g2030 182630

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g2030 410 Gene3D alpha/beta hydrolase 26 398 IPR029058 -
Cco06g2030 410 ProSitePatterns Serine carboxypeptidases, serine active site. 175 182 IPR018202 GO:0004185(InterPro)
Cco06g2030 410 Pfam Serine carboxypeptidase 38 387 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cco06g2030 410 SUPERFAMILY alpha/beta-Hydrolases 36 386 IPR029058 -
Cco06g2030 410 PRINTS Carboxypeptidase C serine protease (S10) family signature 125 135 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cco06g2030 410 PRINTS Carboxypeptidase C serine protease (S10) family signature 161 186 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cco06g2030 410 PRINTS Carboxypeptidase C serine protease (S10) family signature 112 124 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cco06g2030 410 FunFam Carboxypeptidase 27 393 - -
Cco06g2030 410 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 31 387 IPR001563 GO:0004185(InterPro)|GO:0004185(PANTHER)|GO:0005773(PANTHER)|GO:0006508(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g2030 K16297 - - rcu:8275505 618.616
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g2030 Cco-Chr6:30268320 Cco07g1266 Cco-Chr7:26668125 9.60E-155 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g33 . . . . . . . . . . Cma10g00024 . Car10g00016 . . . . Bhi02g00627 . . . . . . Cla06g01779 Cam06g1972 Cec06g2023 Cco06g2030 Clacu06g1930 Cmu06g1870 Cre06g2683 . . Cone13ag0254 . . . . . . . . . . . . . . Cmo10g00021 . . . . . . Cpe18g00936 . . . . . . . . . . . . . . Lsi06g01676 Csa01g00015 Chy02g02698 Cme02g02105
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000392 2 9 3 2 3 4 5 4 4 5 3 3 4 5 5 3 4 4 3 4 5 5 3 5 6 4 2 6 3 8 126