Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g2033 ATGACAGCGGTTGATGGAGAACGCATGCAGAGGCTGATGAACAGTATTTTGGAGGCATCAGACACGAGGGACATTTGTTTTTTTTTTTTAAAAAAAGGAACTTTGGGTAATTATAGTCGGATCAAGATCTACTACGTCTTCATCCAGCTACAGAATAATAATAATAATAATAATAATCTACAGTCTACGCCTCCCTCCAAGGTGCAGTTGCCAGTTGCTAATCCAAATCAACCACTCCAGAAACAGAAACCGAAAAGGGAGAGAAACCGAGGTCTGATACCATATACATACGCTTCGCTTCGCTTTACTTTGCTTTTCAAGACACTGTACAAACTACAGTACTACCATTCACTTCCACTCAACCTTTCCTTCTGTTATGGAAAAACACCATCCCCTTCATCATCAGGTGCCCCTTTTCTTCCCTCTCTCAACTCCTTTCATTCTCTTCCTCTGATCTCATCCCCTCTCTTTTATGTTATGCCGGAATACCAGGATATCAAGGACCTCGACTTGGATCTCGGACCCGACGAGCCTGATCTTGCCCCTCTCCCCCCCACCGTTACTTCCCGGGTACTGCACATGTTGGGAGACATCGCAGCAGGTCCCGCTTACAGGTTTTCCCAATGGCTTGAACTCGTCCGTAAACGTAGCGGCAAACATCGCGCTTCTGCCTTCCACAACCGCCCTCATCCACCTTTCGATATGCCTTTCGGCGCTGAGGAGCTTGTCAATGAATCAAGAACTCTTCCAGCTCCCGAGCAATCAACTGAAACGAATTTGTGGGATAGACTCGCTAAAGCTTCAATGTTGGATATCGAGTCGAGCTGTTTTTCGTGGGATAGGCTTTTGTCTCTTCACCGCACCGAACACAGTAGTAGCACTGAACATTCGGAAGATGAGATGAATAAAGCCCTTGAGGTCACTGTAAATTCTGGTGGAGTCGTTTTCTTTGCACTGTTCAATCAGCTTGGATATGATGATAACGTCCCAAAGGAAGCAGCTGCTGTGATAAAGATATCATCTTCAAGAATGGCCACGCAATCTGAACGCCTTGGTTATGAATTTGCTAAGTGGCTTGGGGTTCAAACTCCACAGGCTAGAGTTATTCATAATTCCAGCACGGAATGGCTCCAGATAAAAGAAGCTGCAGAGAAAGCACGAGATATTGCCTGTTTGGAGGGTGATGAGGTTGGTGAAATGACATGTTCTGAACTATTGGAAGCACTTGAATTTAGCAGATGCCTTTTTCTGATGAGCTATGTGCATGGATCTCCATTGTTGGAAAGCTCAAGTGCATTTGAATCACGAGAAATGGCTGAAAAATTAGCTGCTGCAATTGGAAGGATCTTACTGTTGGACCTTGTCATTAGAAATGAAGATAGGCTCCCTTGTCGTCTTCTTCGTTGGCGTGGAAATTCGGCAAATTTGCTCTTGGCTGATAGAATGACATCTGCAAATATGAATGCATTTGAGGAAGCCTTTGATTCTGCTATTAAGCGATACAAACCAAAAGTCATTACAACGCTTCAAAAAGAAAGAAGGGCAACTTCAGTGGATAATAGATCGAGTTCTAATTCAGGGTTGGTTTCAGAGGTGTCTGAACTTTGTGATATTGTTGAATCCCCAAAATCTAGTAACCTAAGTATAAAAAGTCAAATATCAGATGAAGCATTGCCTTGTGATTTTAATATTGTGGCTATTGACTCTGGTGTTCCTCGTCGACCTCCTGCTGGAAAACGTGCTAATGACCAATCAATTTACCCAAAATTAGTCGAGTTGCTACTTAACAGTTCTGAGTTCTCCTCTAATCTGCTGCATGACATTACAGGAGGGAAATTAGGGTTCCCTTCATCAACCGATGCCAACTCAACTTGTGGCATGCAGCTTACAGATATGAGTTCTATTGTCCATGAATTTCGATATGGGTTTCGTGCTGCTCTTAGAGACTTGCAAGGATTTCACATATTTTTGCTTACCCTTCACCAAAAGTTAGACAACTCATTACGAGCGTTCATGAATATCATAAATAAATTTCCCTTGGGGGAATCTGACAAAGAGGATGCAGGTGTTCCTGAGTCCCATTTGCAGGGTTCTACCACTACTCATTGTTTATCTCCACGTGGTAAGGAACGAGCCTCTAGTGATGGTAATATAGATGTTACAGAGTCAGCTCTAAGATCATCATCGTCAGGAAATAAAGAAAGCTCAGACTTATCTTCTCCCTTGTCACGAGATAGCTCACAAGGAAAGCTATACAAAGGAAGTGCAGAGCCCATTCATAGCCTTCGTTTGACTGCAAAGCTTCGAGACTTTCATAAATTTGCCAAAGTTGATGCTGAATCAAATAAAGAATTGGATATGTGGAATGAAGTGCTAAAGAATGAAGCTGTTAAACTCTGCCAGGAGAATAAATTTAATACTGGGTTTTTTGAGGGCAGCGATAGTCATGGAGTTGTTGATGCTTATGAATTGAAGGTGAGACTTGAGCACATTCTTGAAAGGATTGCACTAATATCCGAGGCTGCAAATACAGAAAGGCCTTCTTCAGTTACACCTGCCTTGTTTATAGGCGGTGCCTTGGCTGCAAGATCTGTTTACACTCTTCAGCATCTAGGAGTTACTCATATTTTATGTCTCTGCTCAAATGAAATTGGGCAGTCAGATTCTCAGTTTCCTGATCTATTTGAATACAAAAATTTTTCGATAAGTGATGATGAAGACTCAAACATCAGCAGCATCTTTGAAGAAGCTTCTGATTTTGTTGATGACGTTGAAAGAAAGGGTGGGAAGGTCCTGGTTCATTGTTTTGAAGGGAAAAGCAGAAGTGCCACATTAGTTCTTGCTTACTTGATGCTCAGAAAGAAATACACACTGTTAAAAGCATGGAATGCCTTGAAACGGGTTCACCGGCGAGCTCAACCTAATGATGGGTTTGCCAAAGCATTATTAGAGTTAGATCGAAGAATACATGGAAAGGTATCCATGGAGTGGCAATCACGGAAACCAACCATGAAAGTTTGCCCAATTTGTGGGAAAAATGCTGGACTGAGCAGTAGCTCACTGAAACTTCATTTGCAAAAATCACACAAGAAGCTATCATCTGGGAGTGTAGACAGCGCAATGACCATGGAAATACAGAAAGCATTGACAGCTCTGAGGATCAGTCGTGGAGGAAGCGTGAGCCCAACCCAGAGGCAATCTCTTCTCATCTTGGATGAATAG 3222 42.61 MTAVDGERMQRLMNSILEASDTRDICFFFLKKGTLGNYSRIKIYYVFIQLQNNNNNNNNLQSTPPSKVQLPVANPNQPLQKQKPKRERNRGLIPYTYASLRFTLLFKTLYKLQYYHSLPLNLSFCYGKTPSPSSSGAPFLPSLNSFHSLPLISSPLFYVMPEYQDIKDLDLDLGPDEPDLAPLPPTVTSRVLHMLGDIAAGPAYRFSQWLELVRKRSGKHRASAFHNRPHPPFDMPFGAEELVNESRTLPAPEQSTETNLWDRLAKASMLDIESSCFSWDRLLSLHRTEHSSSTEHSEDEMNKALEVTVNSGGVVFFALFNQLGYDDNVPKEAAAVIKISSSRMATQSERLGYEFAKWLGVQTPQARVIHNSSTEWLQIKEAAEKARDIACLEGDEVGEMTCSELLEALEFSRCLFLMSYVHGSPLLESSSAFESREMAEKLAAAIGRILLLDLVIRNEDRLPCRLLRWRGNSANLLLADRMTSANMNAFEEAFDSAIKRYKPKVITTLQKERRATSVDNRSSSNSGLVSEVSELCDIVESPKSSNLSIKSQISDEALPCDFNIVAIDSGVPRRPPAGKRANDQSIYPKLVELLLNSSEFSSNLLHDITGGKLGFPSSTDANSTCGMQLTDMSSIVHEFRYGFRAALRDLQGFHIFLLTLHQKLDNSLRAFMNIINKFPLGESDKEDAGVPESHLQGSTTTHCLSPRGKERASSDGNIDVTESALRSSSSGNKESSDLSSPLSRDSSQGKLYKGSAEPIHSLRLTAKLRDFHKFAKVDAESNKELDMWNEVLKNEAVKLCQENKFNTGFFEGSDSHGVVDAYELKVRLEHILERIALISEAANTERPSSVTPALFIGGALAARSVYTLQHLGVTHILCLCSNEIGQSDSQFPDLFEYKNFSISDDEDSNISSIFEEASDFVDDVERKGGKVLVHCFEGKSRSATLVLAYLMLRKKYTLLKAWNALKRVHRRAQPNDGFAKALLELDRRIHGKVSMEWQSRKPTMKVCPICGKNAGLSSSSLKLHLQKSHKKLSSGSVDSAMTMEIQKALTALRISRGGSVSPTQRQSLLILDE 1073
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30286592 30302256 + CcPI632755_06g020330.1 Cco06g2033 182633

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g2033 1073 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 181 1072 IPR035010 GO:0004721(InterPro)|GO:0009737(InterPro)|GO:0043622(InterPro)
Cco06g2033 1073 FunFam Dual specificity protein phosphatase PHS1 818 992 - -
Cco06g2033 1073 ProSiteProfiles Dual specificity protein phosphatase domain profile. 846 991 IPR020422 GO:0006470(InterPro)
Cco06g2033 1073 Pfam Actin-fragmin kinase, catalytic 257 518 IPR015275 -
Cco06g2033 1073 MobiDBLite consensus disorder prediction 57 87 - -
Cco06g2033 1073 MobiDBLite consensus disorder prediction 717 750 - -
Cco06g2033 1073 SMART dsp_5 846 988 IPR020422 GO:0006470(InterPro)
Cco06g2033 1073 MobiDBLite consensus disorder prediction 57 80 - -
Cco06g2033 1073 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 911 967 IPR000387 GO:0016311(InterPro)
Cco06g2033 1073 MobiDBLite consensus disorder prediction 693 707 - -
Cco06g2033 1073 SUPERFAMILY Protein kinase-like (PK-like) 208 584 IPR011009 -
Cco06g2033 1073 MobiDBLite consensus disorder prediction 685 753 - -
Cco06g2033 1073 CDD DSP 847 984 - -
Cco06g2033 1073 Pfam Dual specificity phosphatase, catalytic domain 858 987 IPR000340 GO:0016311(InterPro)
Cco06g2033 1073 Gene3D Protein tyrosine phosphatase superfamily 824 992 IPR029021 -
Cco06g2033 1073 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 846 990 IPR029021 -
Cco06g2033 1073 ProSitePatterns Tyrosine specific protein phosphatases active site. 933 943 IPR016130 GO:0016311(InterPro)
Cco06g2033 1073 Gene3D - 425 557 IPR036940 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g2033 K14165 - - csv:101220184 1640.17
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g32 . . . Bda15g00697 Bpe12g00460 . . . . . Cma10g00021 . Car10g00014 . Sed12g2546 . . Bhi02g00621 Tan09g2433 Cmetu02g0933 . Hepe09g0013 . . Cla06g01782 Cam06g1976 Cec06g2025 Cco06g2033 Clacu06g1933 Cmu06g1874 Cre06g2686 . . Cone13ag0255 . . . . . . . . . . . . Bma08g00279 . Cmo10g00018 . . . . . . Cpe18g00937 . . . . . . . . . . . . . . Lsi06g01680 Csa01g00011 Chy02g02701 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco04g1461 . 77 650 Protein tyrosine phosphatase (PTP) family AT3G50110 62.0 1.3e-190 663.3
Cco02g0686 . 42 611 Protein tyrosine phosphatase (PTP) family AT3G50110 57.9 1.9e-178 622.9
Cco10g1533 . 1 390 Protein tyrosine phosphatase (PTP) family AT5G39400 66.8 1.4e-153 539.7
Cco08g0945 . 1 684 Protein tyrosine phosphatase (PTP) family AT3G10550 74.5 2.6e-300 1028.1
Cco08g0945 . 1 684 Protein tyrosine phosphatase (PTP) family AT5G04540 71.2 5.7e-287 983.8
Cco06g1422 . 1 1258 Protein tyrosine phosphatase (PTP) family AT5G58160 54.7 0.0e+00 1090.9
Cco06g1795 . 25 444 Protein tyrosine phosphatase (PTP) family AT5G58160 64.4 2.2e-141 500.7
Cco09g1035 . 88 392 Protein tyrosine phosphatase (PTP) family AT1G71860 68.0 6.2e-123 437.6
Cco06g2033 . 170 1067 Protein tyrosine phosphatase (PTP) family AT5G23720 65.5 0.0e+00 1099.3
Cco06g0595 . 75 214 Protein tyrosine phosphatase (PTP) family AT3G06110 57.1 1.2e-42 169.9
Cco09g2285 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 77.5 2.2e-71 265.4
Cco05g2408 . 139 383 Protein tyrosine phosphatase (PTP) family AT3G52180 73.9 3.3e-109 391.7
Cco07g0514 . 10 269 Protein tyrosine phosphatase (PTP) family AT3G10940 66.5 5.7e-98 354.4
Cco10g1406 . 143 582 Protein tyrosine phosphatase (PTP) family AT3G01510 72.3 5.9e-198 687.2
Cco02g1936 . 96 297 Protein tyrosine phosphatase (PTP) family AT2G32960 59.1 1.5e-73 273.1
Cco09g1122 . 25 233 Protein tyrosine phosphatase (PTP) family AT2G32960 63.9 2.0e-73 272.7
Cco03g1073 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 51.5 9.3e-55 210.7
Cco10g0247 . 71 403 Protein tyrosine phosphatase (PTP) family AT2G35680 55.5 6.6e-101 364.4
Cco11g0221 . 17 263 Protein tyrosine phosphatase (PTP) family AT2G35680 55.3 1.7e-80 296.6
Cco11g0221 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 1.7e-45 179.5
Cco10g0247 . 107 282 Protein tyrosine phosphatase (PTP) family AT5G56610 50.6 6.0e-43 171.0
Cco02g1936 . 130 298 Protein tyrosine phosphatase (PTP) family AT4G03960 77.5 1.9e-76 282.3
Cco09g1122 . 34 233 Protein tyrosine phosphatase (PTP) family AT4G03960 64.5 2.1e-70 262.3
Cco03g1073 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.7 1.4e-58 223.0
Cco03g1073 . 7 195 Protein tyrosine phosphatase (PTP) family AT3G02800 70.5 4.0e-77 284.6
Cco02g1936 . 121 293 Protein tyrosine phosphatase (PTP) family AT3G02800 60.7 4.6e-57 218.0
Cco07g0302 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 65.6 7.4e-63 239.2
Cco10g1533 . 1 390 Protein tyrosine phosphatase (PTP) family AT5G39400 66.8 1.4e-153 539.7
Cco02g0686 . 33 611 Protein tyrosine phosphatase (PTP) family AT3G19420 66.5 2.0e-220 762.3
Cco04g1461 . 75 650 Protein tyrosine phosphatase (PTP) family AT3G19420 60.9 1.2e-198 689.9
Cco04g1461 . 77 650 Protein tyrosine phosphatase (PTP) family AT3G50110 62.0 1.3e-190 663.3
Cco02g0686 . 42 611 Protein tyrosine phosphatase (PTP) family AT3G50110 57.9 1.9e-178 622.9
Cco06g1422 . 1 1258 Protein tyrosine phosphatase (PTP) family AT5G58160 54.7 0.0e+00 1090.9
Cco06g1795 . 25 444 Protein tyrosine phosphatase (PTP) family AT5G58160 64.4 2.2e-141 500.7
Cco08g0945 . 1 684 Protein tyrosine phosphatase (PTP) family AT3G10550 74.5 2.6e-300 1028.1
Cco08g0945 . 1 684 Protein tyrosine phosphatase (PTP) family AT5G04540 71.2 5.7e-287 983.8
Cco02g2353 . 66 248 Protein tyrosine phosphatase (PTP) family AT3G44620 64.6 4.0e-69 258.5
Cco10g0185 . 22 318 Protein tyrosine phosphatase (PTP) family AT2G35320 63.0 9.2e-110 393.7
Cco04g0913 . 1 672 Protein tyrosine phosphatase (PTP) family AT3G09100 70.2 3.0e-286 981.1
Cco04g0913 . 5 672 Protein tyrosine phosphatase (PTP) family AT5G01290 65.5 4.4e-258 887.5
Cco04g0913 . 86 682 Protein tyrosine phosphatase (PTP) family AT5G28210 55.6 4.0e-184 641.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009525 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 2 1 1 1 1 1 1 1 1 2 1 0 1 1 1 31