Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g2035 ATGGCCTCCTCCGAGGTTTCGATCAACCCCAATTCCGCCTCCTTCAACGACCATGCCGATTCTACCAAAGACACCTCCGATCCACCCAACGCTCTCTCTGCCAGGGATGCTGATATCGCCCTCTACACCGAGCTTTGGAATGCTTGTGCTGGCCCTCTCGTTTCGGTTCCTCGCGAAAACGAGCGCGTCTTCTACTTCCCTCAGGGCCACATCGAACAGGTGGAAGCATCAACAAGTCAAGTGGCAGACCAGCAGATGCCTGTATATAACCTTCCATGGAAGATCCTCTGCCGCGTTATTAATGTGCACTTAAAGGCCGAACCTGACACTGATGAGGTATTTGCACAAATAACTTTGCTTCCAGAGGCTAATCAAGATGAGAATGCTGTGGACAAGGAACCCCCACCTCCTCCCCCGCGGAGATTTCATGTGCATTCCTTTTGCAAGACTCTGACTGCCTCTGACACCAGTACTCATGGGGGGTTTTCAGTCTTGAGACGCCATGCTGATGAATGTCTTCCACCACTGGACATGTCACGACAGCCTCCTACTCAGGAGTTGGTTGCAAAGGATTTGCATGGAACAGAATGGCGTTTTCGTCATATATTTCGAGGGCAACCGCGTAGGCATTTGCTTCAGAGTGGTTGGAGTGTTTTCGTGAGCTCAAAAAGACTGGTTGCAGGAGATGCTTTTATATTCTTGAGGGGTGAGAATGGAGAACTGCGCGTTGGTGTAAGGCGTGCCATGAGACAACATGGCAACATCCCATCATCGGTCATATCTAGCCATAGCATGCATCTTGGTGTGCTTGCAACTGCTTGGCATGCTATTTCCACAGGCACGAGGTTCACTGTCTACTATAAACCTAGGACTAGCCCTTCTGAATTCATTGTTCCATATGACCAGTATATGGAGTCTATTAAGAAGAGCTACACCATAGGAATGCGGTTCAAAATGAGATTTGAAGGTGAAGAGGCTCCTGAACAGAGATTCACTGGTACTATCATTGGATGTGAAGATGCTGATCCCAAAAGGTGGAAAGATTCCAAGTGGAGATGCCTGAAGGTGAGATGGGACGAGACTTCTACTATTTCTCGTCCGGAGAAAGTTTCACCATGGAAAATTGAGCCTGCCCTTGCTCCTCCTGCACTGAACCCCCTTCCTATGACTAGACCTAAGAGGCCTCGATCAAATATGGTATCTACATCCCCCGATTCCTCTGTTCTTACACGAGAAGGTTCATCAAGAGTGACTGTAGACCCTTCACCAGCCAGTGCATTTACAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTGAGAGGCAATTTTATCGATAGTAATGATCCAGATACTGCTGAAAAATCTGTTATGTGGCCTCCTTCACTAGATGATGAGAAAATTGATGTGGTTTCTACGTCTAAGAAACATGGAGCAGATAGCTGGATACCTCCAGGAAGGAGTGAGCCAACTTATGCCGATCTTCTGTCAGGTTTTGGAACTAATATTGATTCATCTCATGGTGTTCGAGCTGGCATGGGAGATTCAGCAGTAGTCACCGTTAATTCAATCAGAAAGCATGCCATGGATCAAGATGGAAAGTTTAACTTCCTTGGTGGTAGCTCATGGTCTGCCTTGCCTTCTGGTCTCTCGCTCAACCTGGTTGACTCTAGTCAGAGGGGTCATATTCAGGCTGGTGACTTATGTTATCAAGGGAGAGGAAATGCTACCTTCAATGGATTTGGTGATCATTCCATGGCCCCTTGTCATAGAACAGAACAGCCTCATGGAAACTGGTTGATGCCTCCACCTTCATCTCATTTTGACTATCCAGTTCATTCAACTGAACTGATGTCAAAACCTATATTATTTCGGAACCAAGATATACTGAAACCCAAAGATGGGAATTGTAAGCTTTTTGGCATCTCTCTCAATAAAAATCCTGCCATTCCAGACCCTGCAGGACTGAGTAGAAATATGATGAACGAGGCAGTAGATGTTATGCATCCTAATATACATCAAATCCATTCAAACGAGTCTGACCTGAAGGCTGAACTATCTAGAGGTTCAAAATTGGCTGATAAATCCCTTGCCATCAATGAGGCTGATAAGTTGCAGCAACCATGTGCACATAACTCGAAGGACACACACAGCAAATCACAGGGTACTTCAGCAAGGAGTTGTACAAAGGTCCACAAGCAGGGGATTGCACTTGGAAGGTCAGTTGATCTTAGCAGGTTCAACAATTACGATGAATTGGTTGCTGAATTGGACCAACTGTTTGAATTTGGTGGTGAGCTGCTGGCTTCCAGAAAGAATTGGCTTATTGTATATACGGATGATGAAGGTGATATGATGCTTGTTGGAGACGATCCCTGGCAGGAGTTTTGTGGTATGGTTCGGAAGATTTTTATCTATACAAGAGAAGAGGTCCAGAAGATGAATCCAGGATCCCTAAATTTAAAAGGTTTTTGGTGCGGTACGGAAGGAGTTGAGCAGAGTAATGCAGCGAGGCCGGAAGGTTGCGGCCTTATGTTAAAGGTAGATGGTAGAAATGATGTATTGAATTTTGGACGTGCAAAAGAAGAGAACACGCTGACACGAATGGAAATTTGTTCAAAATGGGATTGCAACATGAAGCTGCTACTGCTTCTTGGATTTCGCTACTTGAAAGCGAAGGGGGTCAATGCCATGCAAATATCTCGAATAAATTGTTTTTAA 2718 45.58 MASSEVSINPNSASFNDHADSTKDTSDPPNALSARDADIALYTELWNACAGPLVSVPRENERVFYFPQGHIEQVEASTSQVADQQMPVYNLPWKILCRVINVHLKAEPDTDEVFAQITLLPEANQDENAVDKEPPPPPPRRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHGTEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQHGNIPSSVISSHSMHLGVLATAWHAISTGTRFTVYYKPRTSPSEFIVPYDQYMESIKKSYTIGMRFKMRFEGEEAPEQRFTGTIIGCEDADPKRWKDSKWRCLKVRWDETSTISRPEKVSPWKIEPALAPPALNPLPMTRPKRPRSNMVSTSPDSSVLTREGSSRVTVDPSPASAFTRVLQGQEFSTLRGNFIDSNDPDTAEKSVMWPPSLDDEKIDVVSTSKKHGADSWIPPGRSEPTYADLLSGFGTNIDSSHGVRAGMGDSAVVTVNSIRKHAMDQDGKFNFLGGSSWSALPSGLSLNLVDSSQRGHIQAGDLCYQGRGNATFNGFGDHSMAPCHRTEQPHGNWLMPPPSSHFDYPVHSTELMSKPILFRNQDILKPKDGNCKLFGISLNKNPAIPDPAGLSRNMMNEAVDVMHPNIHQIHSNESDLKAELSRGSKLADKSLAINEADKLQQPCAHNSKDTHSKSQGTSARSCTKVHKQGIALGRSVDLSRFNNYDELVAELDQLFEFGGELLASRKNWLIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTREEVQKMNPGSLNLKGFWCGTEGVEQSNAARPEGCGLMLKVDGRNDVLNFGRAKEENTLTRMEICSKWDCNMKLLLLLGFRYLKAKGVNAMQISRINCF 905
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30315379 30320344 - CcPI632755_06g020350.1 Cco06g2035 182635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g2035 905 Pfam B3 DNA binding domain 147 248 IPR003340 GO:0003677(InterPro)
Cco06g2035 905 Gene3D - 144 249 IPR015300 -
Cco06g2035 905 Pfam Auxin response factor 273 355 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cco06g2035 905 MobiDBLite consensus disorder prediction 1 31 - -
Cco06g2035 905 SUPERFAMILY DNA-binding pseudobarrel domain 144 276 IPR015300 -
Cco06g2035 905 MobiDBLite consensus disorder prediction 1 29 - -
Cco06g2035 905 SUPERFAMILY CAD & PB1 domains 722 802 - -
Cco06g2035 905 Pfam AUX/IAA family 709 813 IPR033389 -
Cco06g2035 905 ProSiteProfiles B3 DNA-binding domain profile. 147 249 IPR003340 GO:0003677(InterPro)
Cco06g2035 905 SMART B3_2 147 249 IPR003340 GO:0003677(InterPro)
Cco06g2035 905 MobiDBLite consensus disorder prediction 395 421 - -
Cco06g2035 905 Gene3D - 721 814 - -
Cco06g2035 905 Gene3D - 310 380 - -
Cco06g2035 905 FunFam Auxin response factor 720 814 - -
Cco06g2035 905 FunFam Auxin response factor 145 249 - -
Cco06g2035 905 CDD B3_DNA 145 247 IPR003340 GO:0003677(InterPro)
Cco06g2035 905 MobiDBLite consensus disorder prediction 706 726 - -
Cco06g2035 905 ProSiteProfiles PB1 domain profile. 725 809 IPR053793 -
Cco06g2035 905 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 40 815 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cco06g2035 905 MobiDBLite consensus disorder prediction 381 421 - -
Cco06g2035 905 FunFam Auxin response factor 310 382 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2251 Cco-Chr2:35067857 Cco06g2035 Cco-Chr6:30315379 1.70E-137 dispersed
Cco04g2119 Cco-Chr4:35043708 Cco06g2035 Cco-Chr6:30315379 2.50E-97 dispersed
Cco06g2035 Cco-Chr6:30315379 Cco11g0036 Cco-Chr11:420483 2.30E-177 dispersed
Cco06g2035 Cco-Chr6:30315379 Cco09g0944 Cco-Chr9:8866102 9.80E-160 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59573 PF02309 AUX_IAA 2.30E-12 CL0072 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g2035 K14486 - csv:101206845 1543.1