Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco06g2035 | ATGGCCTCCTCCGAGGTTTCGATCAACCCCAATTCCGCCTCCTTCAACGACCATGCCGATTCTACCAAAGACACCTCCGATCCACCCAACGCTCTCTCTGCCAGGGATGCTGATATCGCCCTCTACACCGAGCTTTGGAATGCTTGTGCTGGCCCTCTCGTTTCGGTTCCTCGCGAAAACGAGCGCGTCTTCTACTTCCCTCAGGGCCACATCGAACAGGTGGAAGCATCAACAAGTCAAGTGGCAGACCAGCAGATGCCTGTATATAACCTTCCATGGAAGATCCTCTGCCGCGTTATTAATGTGCACTTAAAGGCCGAACCTGACACTGATGAGGTATTTGCACAAATAACTTTGCTTCCAGAGGCTAATCAAGATGAGAATGCTGTGGACAAGGAACCCCCACCTCCTCCCCCGCGGAGATTTCATGTGCATTCCTTTTGCAAGACTCTGACTGCCTCTGACACCAGTACTCATGGGGGGTTTTCAGTCTTGAGACGCCATGCTGATGAATGTCTTCCACCACTGGACATGTCACGACAGCCTCCTACTCAGGAGTTGGTTGCAAAGGATTTGCATGGAACAGAATGGCGTTTTCGTCATATATTTCGAGGGCAACCGCGTAGGCATTTGCTTCAGAGTGGTTGGAGTGTTTTCGTGAGCTCAAAAAGACTGGTTGCAGGAGATGCTTTTATATTCTTGAGGGGTGAGAATGGAGAACTGCGCGTTGGTGTAAGGCGTGCCATGAGACAACATGGCAACATCCCATCATCGGTCATATCTAGCCATAGCATGCATCTTGGTGTGCTTGCAACTGCTTGGCATGCTATTTCCACAGGCACGAGGTTCACTGTCTACTATAAACCTAGGACTAGCCCTTCTGAATTCATTGTTCCATATGACCAGTATATGGAGTCTATTAAGAAGAGCTACACCATAGGAATGCGGTTCAAAATGAGATTTGAAGGTGAAGAGGCTCCTGAACAGAGATTCACTGGTACTATCATTGGATGTGAAGATGCTGATCCCAAAAGGTGGAAAGATTCCAAGTGGAGATGCCTGAAGGTGAGATGGGACGAGACTTCTACTATTTCTCGTCCGGAGAAAGTTTCACCATGGAAAATTGAGCCTGCCCTTGCTCCTCCTGCACTGAACCCCCTTCCTATGACTAGACCTAAGAGGCCTCGATCAAATATGGTATCTACATCCCCCGATTCCTCTGTTCTTACACGAGAAGGTTCATCAAGAGTGACTGTAGACCCTTCACCAGCCAGTGCATTTACAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTGAGAGGCAATTTTATCGATAGTAATGATCCAGATACTGCTGAAAAATCTGTTATGTGGCCTCCTTCACTAGATGATGAGAAAATTGATGTGGTTTCTACGTCTAAGAAACATGGAGCAGATAGCTGGATACCTCCAGGAAGGAGTGAGCCAACTTATGCCGATCTTCTGTCAGGTTTTGGAACTAATATTGATTCATCTCATGGTGTTCGAGCTGGCATGGGAGATTCAGCAGTAGTCACCGTTAATTCAATCAGAAAGCATGCCATGGATCAAGATGGAAAGTTTAACTTCCTTGGTGGTAGCTCATGGTCTGCCTTGCCTTCTGGTCTCTCGCTCAACCTGGTTGACTCTAGTCAGAGGGGTCATATTCAGGCTGGTGACTTATGTTATCAAGGGAGAGGAAATGCTACCTTCAATGGATTTGGTGATCATTCCATGGCCCCTTGTCATAGAACAGAACAGCCTCATGGAAACTGGTTGATGCCTCCACCTTCATCTCATTTTGACTATCCAGTTCATTCAACTGAACTGATGTCAAAACCTATATTATTTCGGAACCAAGATATACTGAAACCCAAAGATGGGAATTGTAAGCTTTTTGGCATCTCTCTCAATAAAAATCCTGCCATTCCAGACCCTGCAGGACTGAGTAGAAATATGATGAACGAGGCAGTAGATGTTATGCATCCTAATATACATCAAATCCATTCAAACGAGTCTGACCTGAAGGCTGAACTATCTAGAGGTTCAAAATTGGCTGATAAATCCCTTGCCATCAATGAGGCTGATAAGTTGCAGCAACCATGTGCACATAACTCGAAGGACACACACAGCAAATCACAGGGTACTTCAGCAAGGAGTTGTACAAAGGTCCACAAGCAGGGGATTGCACTTGGAAGGTCAGTTGATCTTAGCAGGTTCAACAATTACGATGAATTGGTTGCTGAATTGGACCAACTGTTTGAATTTGGTGGTGAGCTGCTGGCTTCCAGAAAGAATTGGCTTATTGTATATACGGATGATGAAGGTGATATGATGCTTGTTGGAGACGATCCCTGGCAGGAGTTTTGTGGTATGGTTCGGAAGATTTTTATCTATACAAGAGAAGAGGTCCAGAAGATGAATCCAGGATCCCTAAATTTAAAAGGTTTTTGGTGCGGTACGGAAGGAGTTGAGCAGAGTAATGCAGCGAGGCCGGAAGGTTGCGGCCTTATGTTAAAGGTAGATGGTAGAAATGATGTATTGAATTTTGGACGTGCAAAAGAAGAGAACACGCTGACACGAATGGAAATTTGTTCAAAATGGGATTGCAACATGAAGCTGCTACTGCTTCTTGGATTTCGCTACTTGAAAGCGAAGGGGGTCAATGCCATGCAAATATCTCGAATAAATTGTTTTTAA | 2718 | 45.58 | MASSEVSINPNSASFNDHADSTKDTSDPPNALSARDADIALYTELWNACAGPLVSVPRENERVFYFPQGHIEQVEASTSQVADQQMPVYNLPWKILCRVINVHLKAEPDTDEVFAQITLLPEANQDENAVDKEPPPPPPRRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHGTEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQHGNIPSSVISSHSMHLGVLATAWHAISTGTRFTVYYKPRTSPSEFIVPYDQYMESIKKSYTIGMRFKMRFEGEEAPEQRFTGTIIGCEDADPKRWKDSKWRCLKVRWDETSTISRPEKVSPWKIEPALAPPALNPLPMTRPKRPRSNMVSTSPDSSVLTREGSSRVTVDPSPASAFTRVLQGQEFSTLRGNFIDSNDPDTAEKSVMWPPSLDDEKIDVVSTSKKHGADSWIPPGRSEPTYADLLSGFGTNIDSSHGVRAGMGDSAVVTVNSIRKHAMDQDGKFNFLGGSSWSALPSGLSLNLVDSSQRGHIQAGDLCYQGRGNATFNGFGDHSMAPCHRTEQPHGNWLMPPPSSHFDYPVHSTELMSKPILFRNQDILKPKDGNCKLFGISLNKNPAIPDPAGLSRNMMNEAVDVMHPNIHQIHSNESDLKAELSRGSKLADKSLAINEADKLQQPCAHNSKDTHSKSQGTSARSCTKVHKQGIALGRSVDLSRFNNYDELVAELDQLFEFGGELLASRKNWLIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTREEVQKMNPGSLNLKGFWCGTEGVEQSNAARPEGCGLMLKVDGRNDVLNFGRAKEENTLTRMEICSKWDCNMKLLLLLGFRYLKAKGVNAMQISRINCF | 905 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 30315379 | 30320344 | - | CcPI632755_06g020350.1 | Cco06g2035 | 182635 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco06g2035 | 905 | Pfam | B3 DNA binding domain | 147 | 248 | IPR003340 | GO:0003677(InterPro) | |
Cco06g2035 | 905 | Gene3D | - | 144 | 249 | IPR015300 | - | |
Cco06g2035 | 905 | Pfam | Auxin response factor | 273 | 355 | IPR010525 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro) | |
Cco06g2035 | 905 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
Cco06g2035 | 905 | SUPERFAMILY | DNA-binding pseudobarrel domain | 144 | 276 | IPR015300 | - | |
Cco06g2035 | 905 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
Cco06g2035 | 905 | SUPERFAMILY | CAD & PB1 domains | 722 | 802 | - | - | |
Cco06g2035 | 905 | Pfam | AUX/IAA family | 709 | 813 | IPR033389 | - | |
Cco06g2035 | 905 | ProSiteProfiles | B3 DNA-binding domain profile. | 147 | 249 | IPR003340 | GO:0003677(InterPro) | |
Cco06g2035 | 905 | SMART | B3_2 | 147 | 249 | IPR003340 | GO:0003677(InterPro) | |
Cco06g2035 | 905 | MobiDBLite | consensus disorder prediction | 395 | 421 | - | - | |
Cco06g2035 | 905 | Gene3D | - | 721 | 814 | - | - | |
Cco06g2035 | 905 | Gene3D | - | 310 | 380 | - | - | |
Cco06g2035 | 905 | FunFam | Auxin response factor | 720 | 814 | - | - | |
Cco06g2035 | 905 | FunFam | Auxin response factor | 145 | 249 | - | - | |
Cco06g2035 | 905 | CDD | B3_DNA | 145 | 247 | IPR003340 | GO:0003677(InterPro) | |
Cco06g2035 | 905 | MobiDBLite | consensus disorder prediction | 706 | 726 | - | - | |
Cco06g2035 | 905 | ProSiteProfiles | PB1 domain profile. | 725 | 809 | IPR053793 | - | |
Cco06g2035 | 905 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 40 | 815 | IPR044835 | GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro) | |
Cco06g2035 | 905 | MobiDBLite | consensus disorder prediction | 381 | 421 | - | - | |
Cco06g2035 | 905 | FunFam | Auxin response factor | 310 | 382 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g2251 | Cco-Chr2:35067857 | Cco06g2035 | Cco-Chr6:30315379 | 1.70E-137 | dispersed | |
Cco04g2119 | Cco-Chr4:35043708 | Cco06g2035 | Cco-Chr6:30315379 | 2.50E-97 | dispersed | |
Cco06g2035 | Cco-Chr6:30315379 | Cco11g0036 | Cco-Chr11:420483 | 2.30E-177 | dispersed | |
Cco06g2035 | Cco-Chr6:30315379 | Cco09g0944 | Cco-Chr9:8866102 | 9.80E-160 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59573 | PF02309 | AUX_IAA | 2.30E-12 | CL0072 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco06g2035 | K14486 | - | csv:101206845 | 1543.1 |