Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g2043 ATGACCCAGCCGGTGAAGAAACCCAAAGTGGAGGAACTTTGCTATGCGCAGTCACCTGAAACCGTTACGGCAGAACTAGATGAATGCAATAGTACTGCCGACGACCAAGAGGCGGCACTCATTGCTCTAGTCGAGCATCGTACTCGTGAAGTTCACCATCTTCAGCAGCGTATTTCCTACTACTCTCGTCAGCTGGAGGAAGCAGAGAAGCGGTTACAGGAATCTGAATCTTTGTTGGCCCGCTTTCGAGGTCCGTGTTATACTTTGTCATCAAGAAGTTCTCAGGATTGTGAATTCAAATGTGTGGAGGCTGAACCTAGATCAGCCAGTCCTATTCATGCCAATGGAGGTTCTGAAGCAAAACGACTTCTTGGTTCCAGTCACAGCCCTTCCATTCCCAATCGCTCTAATCTTGCTACAACAGGTGAACAAGGAAAACCTTGTATGGTCTCTTCTATGGGGAAAGTTGTTGATGATCATAGGAAACGAAGAAAGTTTGAGCAAAAAGATCACAAGGAATTGATTCCATTAGTACGAAGTAGCTCTTCCCCATTGACTGCCCAACGAGATGCTAGCTATTATTTTTCCAGTCAGCACAAGAGAAAACTGAGGAGCCTTGCTCCATCTCCTGTTAATGACCAACTTTTCGTTACCAGTGCTTTGGATGGAGTGATCAACCTGTGGCAAGTTGAGTCCAAGGGGTCGTTTGCCTCTCTTCTTTGTACTACTGACTGTATGTCTCAAAAGCAAAGGAGATGGCCTGAAGATATGGCATGGCACCCGGCAGGAAACAGCCTATTTTCCGTGTACAGTGCTGATGGTGGAGATTCTCAAATATCGATCTTGAACTTCAATAGGACTAAAGAGAAGGCCAGTGTTACTTTCTTAGAGGATAAGCCTCATGTTAAAGGCATTATCAACGGCATTAGTTTCTTGCCTTGGGAATCTGTCCCATTCATTACTGGTGGCAGTGACCATGCTGTCGTTCTATGGACTATGAAAGATAGACAGAACAGATGGAAACCAGAGCTGTTGCACAGGAATCTGCACTCTTCAGCTGTCATGGGTGTCTCTGGGATGCAGATGAAGCAAATTGTACTTTCTGCAGGTGCAGACAAGAGAATCCTTGCTTTTGATGTTCAAGTAGGAAGTGTACTCTTCAAGCATCAATTAGAGAGTAAATGTATGAGTGTCTTGCCTAATCCACGTGACTTTAACCTGTTCATGGTTCAAACAGGGAGTCCAGAAAAGCAACTTAGATTATTTGACATTAGATTGGAACAGAAAGAAGTCCACAGTTTTGGGTGGAAGCAAGAAAGCAGTGAATCTCAATCAGCTCTGATAAATCAGGCATGGTCACCTAATGGTTTACACCTAACATCTGGTTCATCAGATCCTGTAATTCATGTTTTTGACATCAGATATTCCATGTGCAAGTTATTAATGCTGCTTGCTATCTGCCCTAAGAGAGGGTCATCTCGTGTTGTTGGACATTTTTGTGCGTTCTCAAAACAACTTATGAAGAGGAGGGCAGCAGATAGCAATGTGGTTGTGATAACACTAAAACCTGATAACAAACCACGAAGACTTGATGCAGCTGCCGCTTATGACTGGGAAATATATGTAAATTTGTTGGTTTTGTTGCTCTACATGTATTTTAAACGAACTGCGGATGGATACAGATGTGTCAAGTGTGTGAAGCTGGTGAAGTTTGATCTGAATGAGACTGGACTTCTGGAGTCGCTAACTATCTGCAAAGCAATGCTTGATTTCAGAGAAGGCGTAATAAACCAAAGCAAGGTGCAAAGGGTGGTGAAAATTAAAAAAGTGGATTCGAAGCGAGGGAAGAGGCCCCTTTGTTCCGATGAGTCGGAGGAAGAAAATCCGTTCCCGATCTACTCAGCTAGATCTGAACATGACATGTCAGCCATGGTTTGTGCGTTAGGTGAAGTGATAAGGAGTGGGAGTAGCAAAAGCCCAGCGGTAGTTGAAGCAGATTATTGGCCAGAATCGGAATCGCAATCGCAGCGACCAGATCATGAAGAAGAAGTGAAAAGAGAGAGTCGGCATTATCGAGGAGTAAGACAGAGACCGTGGGGAAAATGGGCAGCTGAGATTCGTGATCCAAAAAAGGCAGCAAGAGTGTGGCTAGGCACCTTCGACACTGCTGAGGCTGCAGCACTTGCTTACGATGAAGCTGCCCTTAGATTCAAAGGCACAAAAGCCAAGCTCAACTTCCCTGAGAGGCTCACCACTCCACCCTCCTATGCCTATCATCATCCCACCTTTATGCTCAATCTCCACTCCTCAACTTCTCATCCTTCCCATCATCAGGACCACAAAAATTAA 2349 44.74 MTQPVKKPKVEELCYAQSPETVTAELDECNSTADDQEAALIALVEHRTREVHHLQQRISYYSRQLEEAEKRLQESESLLARFRGPCYTLSSRSSQDCEFKCVEAEPRSASPIHANGGSEAKRLLGSSHSPSIPNRSNLATTGEQGKPCMVSSMGKVVDDHRKRRKFEQKDHKELIPLVRSSSSPLTAQRDASYYFSSQHKRKLRSLAPSPVNDQLFVTSALDGVINLWQVESKGSFASLLCTTDCMSQKQRRWPEDMAWHPAGNSLFSVYSADGGDSQISILNFNRTKEKASVTFLEDKPHVKGIINGISFLPWESVPFITGGSDHAVVLWTMKDRQNRWKPELLHRNLHSSAVMGVSGMQMKQIVLSAGADKRILAFDVQVGSVLFKHQLESKCMSVLPNPRDFNLFMVQTGSPEKQLRLFDIRLEQKEVHSFGWKQESSESQSALINQAWSPNGLHLTSGSSDPVIHVFDIRYSMCKLLMLLAICPKRGSSRVVGHFCAFSKQLMKRRAADSNVVVITLKPDNKPRRLDAAAAYDWEIYVNLLVLLLYMYFKRTADGYRCVKCVKLVKFDLNETGLLESLTICKAMLDFREGVINQSKVQRVVKIKKVDSKRGKRPLCSDESEEENPFPIYSARSEHDMSAMVCALGEVIRSGSSKSPAVVEADYWPESESQSQRPDHEEEVKRESRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGTKAKLNFPERLTTPPSYAYHHPTFMLNLHSSTSHPSHHQDHKN 782
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30343396 30351690 + CcPI632755_06g020430.1 Cco06g2043 182643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g2043 782 SMART WD40_4 292 332 IPR001680 GO:0005515(InterPro)
Cco06g2043 782 SMART WD40_4 341 379 IPR001680 GO:0005515(InterPro)
Cco06g2043 782 SMART WD40_4 427 472 IPR001680 GO:0005515(InterPro)
Cco06g2043 782 SMART WD40_4 186 229 IPR001680 GO:0005515(InterPro)
Cco06g2043 782 MobiDBLite consensus disorder prediction 122 147 - -
Cco06g2043 782 FunFam Ethylene-responsive transcription factor 2 689 748 - -
Cco06g2043 782 MobiDBLite consensus disorder prediction 667 689 - -
Cco06g2043 782 MobiDBLite consensus disorder prediction 108 148 - -
Cco06g2043 782 ProSiteProfiles AP2/ERF domain profile. 690 747 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco06g2043 782 ProSiteProfiles Trp-Asp (WD) repeats profile. 196 238 IPR001680 GO:0005515(InterPro)
Cco06g2043 782 Pfam AP2 domain 690 739 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco06g2043 782 Gene3D - 301 526 IPR015943 GO:0005515(InterPro)
Cco06g2043 782 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 2 126 - -
Cco06g2043 782 SUPERFAMILY DNA-binding domain 690 748 IPR016177 GO:0003677(InterPro)
Cco06g2043 782 SUPERFAMILY WD40 repeat-like 202 478 IPR036322 GO:0005515(InterPro)
Cco06g2043 782 CDD AP2 690 748 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco06g2043 782 Coils Coil 51 78 - -
Cco06g2043 782 Pfam WD domain, G-beta repeat 451 472 IPR001680 GO:0005515(InterPro)
Cco06g2043 782 MobiDBLite consensus disorder prediction 673 689 - -
Cco06g2043 782 Gene3D - 174 300 IPR015943 GO:0005515(InterPro)
Cco06g2043 782 Gene3D AP2/ERF domain 689 749 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco06g2043 782 PRINTS Ethylene responsive element binding protein signature 713 729 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco06g2043 782 PRINTS Ethylene responsive element binding protein signature 691 702 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco06g2043 782 SMART rav1_2 690 753 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0641 Cco-Chr2:6362607 Cco06g2043 Cco-Chr6:30343396 4.80E-26 dispersed
Cco06g0166 Cco-Chr6:1701612 Cco06g2043 Cco-Chr6:30343396 1.10E-30 dispersed
Cco06g2043 Cco-Chr6:30343396 Cco08g0846 Cco-Chr8:20315853 1.90E-26 dispersed
Cco07g1277 Cco-Chr7:26791917 Cco06g2043 Cco-Chr6:30343396 1.40E-18 transposed
Cco03g0401 Cco-Chr3:4353556 Cco06g2043 Cco-Chr6:30343396 2.50E-147 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59574 PF00847 AP2 3.00E-14 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g2043 - - - 0.0