Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g2044 ATGCAAGATGGGTCCGGGTGTGGATATGCCGAATTAAGAATTGGTGCAGCAGCTCTCTTCCCACCCACCCCTTGCTCTTGTTTTCTTTCTCTCTGTGGCCTCTTGTCTCCTGAGTCCTGTGAGTTGAGATTTGCGACCCCAGAGGGTAGCAAAGGAAGGTCGGAAAAAGAGCGACAGGTTGAGTTGTTTGTAGTTGTGTACCCCTACGCATACACGCAAAACACTACCACTACCACTACCACTACACGTCCAATTCCGGTAATGGATCCAGAAGCTCTCTCCGCCACTTTGTTCAAATGGGATCCTCGAGGAATGGTGGGGGGCGGCAGCGGCGCACCCCTCCCAGCGCCACTGCCCCCCTACTCGCTGCGGCCCAGGGAGTTGGGATTGGGAGGCCTCGAGGACTTGTTCCAGGCTTACGGAATAAGGTACTACACCGCTGCTAAAATTGCGGAACTTGGATTCACCGTCAGCACCCTCCTGGACATGAAAGACGAAGAGTTAGAGGATATGATAAACAGCCTCTCTCACATTTTTCGTTGGGACCTTCTGGTGGGTGAGAGGTACGGTATTAAGGCTGCTATAAGAGCCGAGCGCAGACGTCTAGATGACGAGACCGATTCCTCCAGGCGCCGTCACCTCTTGTCCAATGACAACACAACCAACGTCGTCCTCGATGCCCTCTCTCAGGAAGGGCTGTCGGAAGAACCGGTGCAGCAGGAGAAGGAGGCGGTTGGAAGTGGAGGAGGAGGAGCGTGGGAGGCAGTTGCAGCCGCTGAGATCAGGAAGAAGCAGCGGAGGAAAAACGGATCAAAAAAGAAGCAGGTGATGGTGATGGAGGAGGATCACGATGAAAACGAGGGAGCTGGGGACGAGGAGGAGAATATGGAAGTCAGCGAGAGACAGCGGGAGCATCCATTCATCGTAACCGAGCCAGGGGAGGTTGCACGGGGAAAGAAGAACGGCCTCGACTATCTCTTTCACTTATATGAGCAGTGTCGTGAATTTTTGATCCAAGTCCAGAACATTGCCAAGGAACGAGGAGAAAAATGCCCCACTAAGGTGACGAACCAGGTGTTTAGATATGCAAAGAAGGCGGGAGCAAGTTACATAAACAAGCCCAAAATGAGACACTACGTGCACTGCTATGCCCTGCACTGTCTAGACGAGGAAGCGTCGAACGCATTGAGGAGCGTTTTCAAAGAGAGGGGCGAAAATGTGGGAGCCTGGCGACAGGCATGTTATAAGCCTCTGGTAGCCATAGCAGCTGCCCAAGGTTGGGACATCGATGCCATTTTCAACGCACATCCACGCCTCGCCATCTGGTATGTGCCTACCAAACTCCGTCAACTCTGCCATGCCGAGCGCAACGGTTCCACAGCCTCCACCTCAGCCGCCGCACCTCACTTGCCTTTTTAG 1419 53.7 MQDGSGCGYAELRIGAAALFPPTPCSCFLSLCGLLSPESCELRFATPEGSKGRSEKERQVELFVVVYPYAYTQNTTTTTTTTRPIPVMDPEALSATLFKWDPRGMVGGGSGAPLPAPLPPYSLRPRELGLGGLEDLFQAYGIRYYTAAKIAELGFTVSTLLDMKDEELEDMINSLSHIFRWDLLVGERYGIKAAIRAERRRLDDETDSSRRRHLLSNDNTTNVVLDALSQEGLSEEPVQQEKEAVGSGGGGAWEAVAAAEIRKKQRRKNGSKKKQVMVMEEDHDENEGAGDEEENMEVSERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQNIAKERGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEASNALRSVFKERGENVGAWRQACYKPLVAIAAAQGWDIDAIFNAHPRLAIWYVPTKLRQLCHAERNGSTASTSAAAPHLPF 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30357425 30359722 - CcPI632755_06g020440.1 Cco06g2044 182644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g2044 472 PANTHER PROTEIN LEAFY 88 466 IPR002910 GO:0003677(InterPro)|GO:0006355(InterPro)
Cco06g2044 472 Pfam Floricaula / Leafy protein SAM domain 130 206 IPR035079 -
Cco06g2044 472 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 297 460 IPR035209 GO:0003677(InterPro)
Cco06g2044 472 MobiDBLite consensus disorder prediction 263 301 - -
Cco06g2044 472 Gene3D Protein LEAFY 298 466 IPR038276 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59575 PF17538 C_LFY_FLO 3.00E-107 CL0123 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g2044 - - - 0.0