Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0052 ATGAATCCTCATTACCCAGTGAAGGAGGAGGACTGGGGGCCAACCTCGTCGGAGGTAGCCGGCGGTTATGTCTTACCGTCGACGCCACAGCCGATGGAGGGTCTTTACGGCGTTGGTCCACCGCCATTTCTGATCAAGACATTTGACATGGTGGATGATCCGATTACCGATCACATTATCTCTTGGGGCAGGGGAGGCATCAGCTTCATTGTATGGGATCCCAAGGCCTTCTCTGTTAATTTGCTGCCTCGGTTCTTCAAGCATAACAACTTCTCCAGCTTCATTCGGCAGCTCAACACTTATGGTTTTAGGAAGATTAATCCAGAGAGATGGGAGTTTGCAAATGAAGGATTCTTGAGAGGCCAAAAGCATCTTCTTAGGACTATTAGGAGAAGAAAACCACCAAACTCTGACCCTTTGCCTCTGGAACAAGAAGCCGGTGCTTGTGTCGAAATAGGTCGATTCGGGCTCGATGCTGAACTCGACCGTTTGAAACGGGACAAACAAGTGGTGATGATGGAACTAATTAAGCTAAGGCGTGAGCAGCAGAATACCAGAGCCTACCTACAAGCAATGGAACAAAAGCTGCGAGGGACAGAGATGAAACAACGACAGATGATGAAATTCTTGGCAAGAGCAATGCAGAATCCAGACTTCATTCACCAACTAAACCAGCAGAAGAAGAAAAGGGACATTGAAGAAGCTGCAACAAAGAAGAGGAGGAGGCCTATTGACCAAGGACCAAGCAGCTCCAGAGACATTGAAGAAGGCATCTCAAACCCCATTAAGATTGAGCCTATAGAATTTTGTGGATATGAAGTATCTGAACTGGAAGCACTTGCTTTGGAAATGCAAGGATTAGGCAAGGCAGTTAAGAAAGAAACAGAAGTAAATAAAGAGATGCAGCAGCCTCCAGAGACTGGAGATACAGAGCTGGATGAGGGATTTTGGGAAGAGTTTTTCAGTGGAAGAACAGAAGAAGAAGATGACGACGACGATGACAACGTGGTGAACGCCTTAAGCGATCGCTTCGGCTATTTAGATCTCCATTTCTTCTGGGATGGGAAATCTTGGCAAGCACAGTATTAA 1089 46.46 MNPHYPVKEEDWGPTSSEVAGGYVLPSTPQPMEGLYGVGPPPFLIKTFDMVDDPITDHIISWGRGGISFIVWDPKAFSVNLLPRFFKHNNFSSFIRQLNTYGFRKINPERWEFANEGFLRGQKHLLRTIRRRKPPNSDPLPLEQEAGACVEIGRFGLDAELDRLKRDKQVVMMELIKLRREQQNTRAYLQAMEQKLRGTEMKQRQMMKFLARAMQNPDFIHQLNQQKKKRDIEEAATKKRRRPIDQGPSSSRDIEEGISNPIKIEPIEFCGYEVSELEALALEMQGLGKAVKKETEVNKEMQQPPETGDTELDEGFWEEFFSGRTEEEDDDDDDNVVNALSDRFGYLDLHFFWDGKSWQAQY 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 502400 503974 + CcPI632755_07g000520.1 Cco07g0052 182705

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0052 362 MobiDBLite consensus disorder prediction 295 314 - -
Cco07g0052 362 Coils Coil 161 195 - -
Cco07g0052 362 SMART hsfneu3 39 132 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco07g0052 362 Gene3D - 38 133 IPR036388 -
Cco07g0052 362 ProSitePatterns HSF-type DNA-binding domain signature. 82 106 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco07g0052 362 FunFam Heat shock transcription factor 1 36 133 - -
Cco07g0052 362 PRINTS Heat shock factor (HSF) domain signature 81 93 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco07g0052 362 PRINTS Heat shock factor (HSF) domain signature 94 106 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco07g0052 362 PRINTS Heat shock factor (HSF) domain signature 43 66 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco07g0052 362 Pfam HSF-type DNA-binding 43 132 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco07g0052 362 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 28 330 IPR027725 GO:0000978(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0034605(PANTHER)
Cco07g0052 362 MobiDBLite consensus disorder prediction 223 249 - -
Cco07g0052 362 SUPERFAMILY Winged helix DNA-binding domain 39 132 IPR036390 -
Cco07g0052 362 MobiDBLite consensus disorder prediction 223 258 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0052 K09419 - - csv:101212281 592.808
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0052 Cco-Chr7:502400 Cco08g1887 Cco-Chr8:29895028 4.30E-66 dispersed
Cco05g0570 Cco-Chr5:4630701 Cco07g0052 Cco-Chr7:502400 3.70E-78 wgd
Cco07g0052 Cco-Chr7:502400 Cco09g0706 Cco-Chr9:6374513 6.20E-105 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco05g0570 . 37 237 HSF AT4G17750 59.6 1.0e-62 238.0
Cco09g0706 . 89 330 HSF AT4G17750 51.0 3.1e-59 226.5
Cco08g1887 . 42 242 HSF AT4G17750 54.6 5.9e-58 222.2
Cco03g0708 . 13 192 HSF AT4G17750 50.8 8.3e-44 175.3
Cco06g0947 . 12 172 HSF AT4G17750 50.3 1.9e-40 164.1
Cco08g1787 . 14 118 HSF AT4G17750 69.5 3.6e-39 159.8
Cco05g2263 . 20 118 HSF AT4G17750 69.7 2.3e-38 157.1
Cco01g0311 . 20 115 HSF AT4G17750 70.8 7.5e-37 152.1
Cco05g0570 . 38 242 HSF AT5G16820 57.5 5.6e-61 232.3
Cco07g0052 . 26 262 HSF AT5G16820 50.6 2.3e-59 226.9
Cco09g0706 . 90 302 HSF AT5G16820 54.0 4.1e-56 216.1
Cco08g1887 . 43 244 HSF AT5G16820 53.1 7.1e-56 215.3
Cco06g0947 . 8 176 HSF AT5G16820 51.6 1.5e-42 171.0
Cco04g2180 . 9 191 HSF AT5G16820 50.3 2.6e-42 170.2
Cco02g1950 . 13 188 HSF AT5G16820 50.3 2.9e-41 166.8
Cco10g0148 . 13 514 HSF AT1G32330 52.9 5.7e-122 434.9
Cco05g0570 . 26 227 HSF AT1G32330 54.0 1.1e-59 228.0
Cco09g0706 . 78 298 HSF AT1G32330 51.3 1.7e-57 220.7
Cco07g0052 . 29 226 HSF AT1G32330 53.1 1.9e-56 217.2
Cco08g1887 . 31 223 HSF AT1G32330 54.1 1.0e-54 211.5
Cco08g1787 . 20 117 HSF AT1G32330 72.4 3.0e-38 156.8
Cco07g0052 . 41 262 HSF AT3G02990 52.6 3.8e-62 236.1
Cco05g0570 . 38 241 HSF AT3G02990 57.6 1.1e-61 234.6
Cco09g0706 . 90 313 HSF AT3G02990 52.4 1.1e-58 224.6
Cco08g1887 . 43 244 HSF AT3G02990 51.7 6.9e-56 215.3
Cco06g0947 . 9 172 HSF AT3G02990 50.5 1.3e-41 167.9
Cco05g0570 . 25 298 HSF AT2G26150 50.5 4.0e-69 258.8
Cco09g0706 . 78 297 HSF AT2G26150 54.3 3.0e-64 242.7
Cco10g0148 . 8 243 HSF AT2G26150 55.7 3.1e-61 232.6
Cco11g0193 . 28 247 HSF AT2G26150 50.7 2.2e-51 199.9
Cco10g1925 . 1115 1371 HSF AT5G03720 57.1 4.5e-75 278.9
Cco05g0358 . 6 462 HSF AT4G13980 51.5 1.3e-115 413.7
Cco02g1950 . 4 183 HSF AT4G13980 50.6 1.3e-43 174.5
Cco05g0570 . 26 218 HSF AT5G43840 53.9 7.8e-55 211.1
Cco08g1887 . 31 234 HSF AT5G43840 50.5 1.5e-45 180.3
Cco09g0706 . 78 415 HSF AT3G22830 53.3 1.3e-90 330.5
Cco05g0570 . 22 338 HSF AT3G22830 52.2 2.4e-89 326.2
Cco07g0052 . 27 347 HSF AT3G22830 51.8 2.5e-86 316.2
Cco08g1887 . 31 253 HSF AT3G22830 54.5 3.2e-65 246.1
Cco10g0148 . 29 242 HSF AT3G22830 58.9 1.1e-62 237.7
Cco09g0706 . 77 390 HSF AT3G51910 50.8 4.4e-71 265.0
Cco07g0052 . 29 322 HSF AT3G51910 52.3 5.4e-69 258.1
Cco08g1887 . 31 223 HSF AT3G51910 56.5 1.7e-54 209.9
Cco07g0052 . 29 321 HSF AT3G63350 50.3 7.5e-66 247.7
Cco08g1887 . 31 230 HSF AT3G63350 53.0 1.2e-50 197.2
Cco02g1950 . 5 140 HSF AT3G63350 56.6 3.0e-38 156.0
Cco04g1439 . 2 296 HSF AT4G36990 52.0 7.1e-72 267.7
Cco05g0957 . 599 706 HSF AT4G36990 64.8 2.3e-38 156.4
Cco08g1787 . 17 115 HSF AT5G62020 67.7 1.9e-38 156.8
Cco01g0311 . 16 339 HSF AT4G11660 51.2 4.7e-79 292.0
Cco08g1787 . 16 121 HSF AT4G11660 71.7 3.7e-44 176.0
Cco04g1439 . 2 107 HSF AT4G11660 71.7 3.5e-42 169.5
Cco03g1271 . 20 119 HSF AT4G11660 69.0 4.7e-39 159.1
Cco10g0148 . 33 126 HSF AT4G11660 69.1 1.7e-36 150.6
Cco10g1566 . 24 222 HSF AT2G41690 55.7 2.5e-49 192.6
Cco04g0481 . 7 214 HSF AT2G41690 50.6 1.6e-48 189.9
Cco08g1787 . 9 373 HSF AT1G46264 51.9 8.6e-88 320.9
Cco05g2263 . 1 238 HSF AT1G46264 63.8 2.1e-81 299.7
Cco03g1271 . 19 200 HSF AT1G46264 53.3 3.1e-53 206.1
Cco10g0148 . 33 138 HSF AT1G46264 73.6 3.6e-41 166.0
Cco02g1950 . 5 115 HSF AT1G46264 63.1 4.1e-37 152.5
Cco10g1566 . 21 118 HSF AT1G46264 69.4 5.3e-37 152.1
Cco11g0267 . 10 181 HSF AT3G24520 64.0 7.7e-62 234.6
Cco05g0570 . 37 237 HSF AT4G17750 59.6 1.0e-62 238.0
Cco09g0706 . 89 330 HSF AT4G17750 51.0 3.1e-59 226.5
Cco08g1887 . 42 242 HSF AT4G17750 54.6 5.9e-58 222.2
Cco03g0708 . 13 192 HSF AT4G17750 50.8 8.3e-44 175.3
Cco06g0947 . 12 172 HSF AT4G17750 50.3 1.9e-40 164.1
Cco08g1787 . 14 118 HSF AT4G17750 69.5 3.6e-39 159.8
Cco05g2263 . 20 118 HSF AT4G17750 69.7 2.3e-38 157.1
Cco01g0311 . 20 115 HSF AT4G17750 70.8 7.5e-37 152.1
Cco05g0570 . 38 242 HSF AT5G16820 57.5 5.6e-61 232.3
Cco07g0052 . 26 262 HSF AT5G16820 50.6 2.3e-59 226.9
Cco09g0706 . 90 302 HSF AT5G16820 54.0 4.1e-56 216.1
Cco08g1887 . 43 244 HSF AT5G16820 53.1 7.1e-56 215.3
Cco06g0947 . 8 176 HSF AT5G16820 51.6 1.5e-42 171.0
Cco04g2180 . 9 191 HSF AT5G16820 50.3 2.6e-42 170.2
Cco02g1950 . 13 188 HSF AT5G16820 50.3 2.9e-41 166.8
Cco10g0148 . 13 514 HSF AT1G32330 52.9 5.7e-122 434.9
Cco05g0570 . 26 227 HSF AT1G32330 54.0 1.1e-59 228.0
Cco09g0706 . 78 298 HSF AT1G32330 51.3 1.7e-57 220.7
Cco07g0052 . 29 226 HSF AT1G32330 53.1 1.9e-56 217.2
Cco08g1887 . 31 223 HSF AT1G32330 54.1 1.0e-54 211.5
Cco08g1787 . 20 117 HSF AT1G32330 72.4 3.0e-38 156.8
Cco07g0052 . 41 262 HSF AT3G02990 52.6 3.8e-62 236.1
Cco05g0570 . 38 241 HSF AT3G02990 57.6 1.1e-61 234.6
Cco09g0706 . 90 313 HSF AT3G02990 52.4 1.1e-58 224.6
Cco08g1887 . 43 244 HSF AT3G02990 51.7 6.9e-56 215.3
Cco06g0947 . 9 172 HSF AT3G02990 50.5 1.3e-41 167.9
Cco05g0570 . 25 298 HSF AT2G26150 50.5 4.0e-69 258.8
Cco09g0706 . 78 297 HSF AT2G26150 54.3 3.0e-64 242.7
Cco10g0148 . 8 243 HSF AT2G26150 55.7 3.1e-61 232.6
Cco11g0193 . 28 247 HSF AT2G26150 50.7 2.2e-51 199.9
Cco10g1925 . 1115 1371 HSF AT5G03720 57.1 4.5e-75 278.9
Cco05g0358 . 6 462 HSF AT4G13980 51.5 1.3e-115 413.7
Cco02g1950 . 4 183 HSF AT4G13980 50.6 1.3e-43 174.5
Cco05g0570 . 26 218 HSF AT5G43840 53.9 7.8e-55 211.1
Cco08g1887 . 31 234 HSF AT5G43840 50.5 1.5e-45 180.3
Cco09g0706 . 78 415 HSF AT3G22830 53.3 1.3e-90 330.5
Cco05g0570 . 22 338 HSF AT3G22830 52.2 2.4e-89 326.2
Cco07g0052 . 27 347 HSF AT3G22830 51.8 2.5e-86 316.2
Cco08g1887 . 31 253 HSF AT3G22830 54.5 3.2e-65 246.1
Cco10g0148 . 29 242 HSF AT3G22830 58.9 1.1e-62 237.7
Cco09g0706 . 77 390 HSF AT3G51910 50.8 4.4e-71 265.0
Cco07g0052 . 29 322 HSF AT3G51910 52.3 5.4e-69 258.1
Cco08g1887 . 31 223 HSF AT3G51910 56.5 1.7e-54 209.9
Cco07g0052 . 29 321 HSF AT3G63350 50.3 7.5e-66 247.7
Cco08g1887 . 31 230 HSF AT3G63350 53.0 1.2e-50 197.2
Cco02g1950 . 5 140 HSF AT3G63350 56.6 3.0e-38 156.0
Cco04g1439 . 2 296 HSF AT4G36990 52.0 7.1e-72 267.7
Cco05g0957 . 599 706 HSF AT4G36990 64.8 2.3e-38 156.4
Cco08g1787 . 17 115 HSF AT5G62020 67.7 1.9e-38 156.8
Cco01g0311 . 16 339 HSF AT4G11660 51.2 4.7e-79 292.0
Cco08g1787 . 16 121 HSF AT4G11660 71.7 3.7e-44 176.0
Cco04g1439 . 2 107 HSF AT4G11660 71.7 3.5e-42 169.5
Cco03g1271 . 20 119 HSF AT4G11660 69.0 4.7e-39 159.1
Cco10g0148 . 33 126 HSF AT4G11660 69.1 1.7e-36 150.6
Cco10g1566 . 24 222 HSF AT2G41690 55.7 2.5e-49 192.6
Cco04g0481 . 7 214 HSF AT2G41690 50.6 1.6e-48 189.9
Cco08g1787 . 9 373 HSF AT1G46264 51.9 8.6e-88 320.9
Cco05g2263 . 1 238 HSF AT1G46264 63.8 2.1e-81 299.7
Cco03g1271 . 19 200 HSF AT1G46264 53.3 3.1e-53 206.1
Cco10g0148 . 33 138 HSF AT1G46264 73.6 3.6e-41 166.0
Cco02g1950 . 5 115 HSF AT1G46264 63.1 4.1e-37 152.5
Cco10g1566 . 21 118 HSF AT1G46264 69.4 5.3e-37 152.1
Cco11g0267 . 10 181 HSF AT3G24520 64.0 7.7e-62 234.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001412 1 3 2 0 1 2 2 2 2 2 2 2 2 3 2 2 2 4 2 2 2 2 2 2 2 2 2 12 6 0 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59577 PF00447 HSF_DNA-bind 2.20E-30 CL0123 Cco TF