Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0064 ATGTGGGAAAATTGGGCCAAAAGCCTTAAAAGAAGAAAGGAGAAGGCAGAAACGGTGTCGTTTGAGGAGACAGAGCTGAGGCTAGGGTGGCCTGGAAATAATAATGGAAGATCAGAAATGACAAGGAAGAGAGGGTTATTCCATGAAGAAGAATACTCATCACCCACTCATCAAACAATACTAACAATGCCAGATTTGAAGCTTAATCTTATCTCATCTCAGAGCCCTCCCCCACCCAAGGCAGAAGTGGTGGGTTGGCCACCAATAAGGTCTTATAGGAAGAAGAGGTTGGGGGATGTTCAAAAGGGAAGCAAAGAAGAAGAAATTAGTGATGAAGAAAAGAAAGTGGTGAAGGTTAGCCTTGAAGGTGCACCTTATCTTCGTAAGGTCGACTTGAACATGTTCAACAGCTACACTCAACTTTCCCATGCCTTGGCCAAATTCTTTGCTGCCTTCACCATTGGTAATTTTGGATCCCAAGCAGGTGGGATGAAAGACTTCATGAATGAAAGCAAACTAATAGATTTATTGAATGGTTCTGATTATGTTCCAACCTATCAAGACAAAGATGGTGATTGGATGCTTCTTGGTGATGTTCCATGGCAGATGTTTGTTGAATCTTGCAAGCGTGTACGCATAATGAAAGGAAAGGAAGCCATTGGCCTTGGAGCTGATTGGAAGATGAGTTTAATATCACAAAATGTTACTGTAATTAGTAGTATTCAGAAGGTTACAGGGGAGAATATTGTTGGTTCGTCATCTCCATTGAGAAATGGAGATGCTAATGATGTAGAAAACTCTGGTCTAGATACTACTAGGGCAAAAAAGAGAAAGAAAGAACATAAAAAAGAAGATGAACAACAAAAGGAAATCAAGAAGCTTGAAAACTTTCTTTTTGGATCACTCTATTCCCCTGTTGAATTTGGGAAGGCTGAAGAGCAAAATGGTTTTAATTCTGAGGAGAAAGTTCCTGCTTTGTACATAATGGACCGCTCTGCAAATAATTCCCTTTCTGCATATGAAGATGATTTTGGGCCCCTACATGAGAGTACGAATGAGGAACCTCAGCAAAGAAAAGCAGTATGGGTCGACGAGGAAGAGGAGAAGGCCACGGTTAATATTACTACTGTTAGTAGACTGAGAAAGTTGAGGAAAGAAGAAGATGAGAATTCGATTTCAGGCTCAGAGTATGTGTCAAGATTGAGGGCTCAACATGCCAAGCTAAACCCAGGCACCGAGTGGGCTCAACTTGATGCGCAATCCACGGGTGACAGTGATAACGATGATCGATCATCTGATGATGAAAATGCAGTTGCATTGGCTGATGGTTATGATAATGTTGATTCTATTGATGATATCCTTCGAACGAGTGAGAATCTCGTTGTGAAGAGAGGAGCAAAATTGTTACCTGGTCTTCTTGAATACACAAGACTTGTAGATGCTAACGCAGAGGAGCCATCTAATGGTCCTGTCAATTCGGTTCAGTTTCATTGCAATGCTCAGTTACTGCTAGCCACTGGGTTGGATCGAAAGCTTAGATTTTTTCAGATTGATGGCAAACGAAATACCAAAATTCAAAGCATTTTCCTTGAGGATTGCCCTATACGAAAGGCATCATTCTTGCCTGATGGATCTCAGGTTATCATAGCTGGGAGGAGAAAGTTCTTCTATAGCCTCGATTTAGTGAAAGCAAAAGTAGATAAAATTGGCCCTCTTGTAGGTCGAGACGAGAAAAGCCTTGAAGTTTTTGAAGTTTCTCCTGATTCTAGCACAGTCGCATTTATTGGTAATGAAGGCTACATCCTGTTAGTGTCAACCAAAACAAAGGAGCTCATCGGAACGCTTAAGATGAATGGAAGCGTTCGTTCTTTGGCATTCGCAGACAATGGACAACAGCTATTGAGCTCTGGCGGTGACGGGCAGGTCTACCATTGGGATTTACGAACAAGAACGTGCATACACAAGGGTGTCGACGAAGGTTGCATCAATGGTACTGCATTATGTACATCTCCAAATGGAGCATTGTTTGCAGCTGGTTCTGACAGTGGGATTGTTAACATCTACAATAGACAAGAATTCTTAGGGGGAAAGAAGAAGCCACTGAAAGCCATTGAGAATCTGACCACCAAAGTAGACTTTCTTAAATTCAATTATGATGCTCAAATTTTGGCCATCTGTTCAAGAATGAAGAAAAGTAGTTTGAAGTTGATACATGTTCCTTCTTTTACGGTATTTTCGAACTGGCCACCGCCGAAGAAGAACCTTCAATACCCTTCATGTTTGGATTTCAGTCCTGAAGGAGGTTACATGGCTGTTGGAAATGCTGCTGGAAAGTACAAGAAGAGCAATAATAATGTTTGTGGGATCGAAATCTTAGCTTCAGAGATGGCTGGAGATGGATTTGTTATCCCTGTGGAATCTCAGGTGAGTTCGGTGAAGAAGAAGAAGAAGACGACGACGACGACGACGAAGAAGAAGAATACTGCGATTTCCACGAGCTGGGTTTCGTTGGACCATGAAGGAAGGAGTACGATTTTGGATGTGGATAAGTATGCGATTATGCAAAGAGTTCAGATTAATGCGAGAGATCTTCGGCTTCTCGATCCTCTCTTGTCGTATCCTTCCACTATCTTGGGCAGAGAAAGAGTGATTGTTCTTAATTTGGAGCACATCAAGTCAATTATCACTGCGGACGAGGTGCTGCTTAGAGATCCAATGGATGAAAATGTAGTTCCAATTGTTGAAGAACTGCAGAGACGGTTGCCTTCCACAACTTCCATATACCAAGGACAAGGGGAAGAAGAAGAGCCTTCTACCACGCAAAATGAGTCCGCTGAAAACGAATTTCCATTTGAATTCCGCGCTTTAGAGGTCGCACTCGAAGCAATTTGTAGTTTTCTTGATGCACGCACAAGAGAACTAGAGACTGATACATATCCTGCTTTAGATGACCTGACCTCCAAGATTAGCAGTCGTAACTTGGACCGAGTGCGCAAACTGAAGAGTGCAATGACAAGGTTGACAAATCGGGTGCAAAAGGTTAGGGATGAACTTGAACAACTTCTGGATGACGACGACGACATGGCAGAACTTTACTTGTCACGAAAAGTAGCTGGCACCCCTGAAAGTGGCTTCGGGACTCCAATTTGGTTTCTTGCGTCTCCTAAGGACTATTCAAAGATGTCTAAAACAAGTAGAGCAAGTGTGATTACTATTCGAGGAGAGAATGATGTGGAGGAACTAGAAATGCTACTCGAGGCTTATTTTATGCAAATTGAAGGTACATTAAACAAACTAATCACGTTGCGGGAGTACATCGATGACACGGAGGATTACATCAATATTCAGCTTGACAATCACAGGAATCAACTTATTCAGCTAGAACTCTTTTTGAGCTCTGGGACTGTTTGTTTGTCTATTTATTCTTTAGTGACTGCAATATTTGGAATGAATATCCCATATACCTGGAAGGAAGATCATGAACATGTATTCAAATGGGTGGTCATCCTGACAGGAATAGTTTGTGCAACCATTTATGTGTCACTAAGCTCGTATGCGCGATACAAAGGTCTCGTTGGATCTTGA 3585 42.01 MWENWAKSLKRRKEKAETVSFEETELRLGWPGNNNGRSEMTRKRGLFHEEEYSSPTHQTILTMPDLKLNLISSQSPPPPKAEVVGWPPIRSYRKKRLGDVQKGSKEEEISDEEKKVVKVSLEGAPYLRKVDLNMFNSYTQLSHALAKFFAAFTIGNFGSQAGGMKDFMNESKLIDLLNGSDYVPTYQDKDGDWMLLGDVPWQMFVESCKRVRIMKGKEAIGLGADWKMSLISQNVTVISSIQKVTGENIVGSSSPLRNGDANDVENSGLDTTRAKKRKKEHKKEDEQQKEIKKLENFLFGSLYSPVEFGKAEEQNGFNSEEKVPALYIMDRSANNSLSAYEDDFGPLHESTNEEPQQRKAVWVDEEEEKATVNITTVSRLRKLRKEEDENSISGSEYVSRLRAQHAKLNPGTEWAQLDAQSTGDSDNDDRSSDDENAVALADGYDNVDSIDDILRTSENLVVKRGAKLLPGLLEYTRLVDANAEEPSNGPVNSVQFHCNAQLLLATGLDRKLRFFQIDGKRNTKIQSIFLEDCPIRKASFLPDGSQVIIAGRRKFFYSLDLVKAKVDKIGPLVGRDEKSLEVFEVSPDSSTVAFIGNEGYILLVSTKTKELIGTLKMNGSVRSLAFADNGQQLLSSGGDGQVYHWDLRTRTCIHKGVDEGCINGTALCTSPNGALFAAGSDSGIVNIYNRQEFLGGKKKPLKAIENLTTKVDFLKFNYDAQILAICSRMKKSSLKLIHVPSFTVFSNWPPPKKNLQYPSCLDFSPEGGYMAVGNAAGKYKKSNNNVCGIEILASEMAGDGFVIPVESQVSSVKKKKKTTTTTTKKKNTAISTSWVSLDHEGRSTILDVDKYAIMQRVQINARDLRLLDPLLSYPSTILGRERVIVLNLEHIKSIITADEVLLRDPMDENVVPIVEELQRRLPSTTSIYQGQGEEEEPSTTQNESAENEFPFEFRALEVALEAICSFLDARTRELETDTYPALDDLTSKISSRNLDRVRKLKSAMTRLTNRVQKVRDELEQLLDDDDDMAELYLSRKVAGTPESGFGTPIWFLASPKDYSKMSKTSRASVITIRGENDVEELEMLLEAYFMQIEGTLNKLITLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVTAIFGMNIPYTWKEDHEHVFKWVVILTGIVCATIYVSLSSYARYKGLVGS 1194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 611745 626614 + CcPI632755_07g000640.1 Cco07g0064 182717

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0064 1194 Gene3D Magnesium transport protein CorA, transmembrane region 909 1124 - -
Cco07g0064 1194 Gene3D - 108 227 - -
Cco07g0064 1194 MobiDBLite consensus disorder prediction 251 288 - -
Cco07g0064 1194 Gene3D - 816 905 - -
Cco07g0064 1194 Coils Coil 997 1024 - -
Cco07g0064 1194 CDD Mrs2_Mfm1p-like 834 1191 IPR039204 -
Cco07g0064 1194 FunFam Magnesium transporter MRS2-1 821 905 - -
Cco07g0064 1194 MobiDBLite consensus disorder prediction 269 288 - -
Cco07g0064 1194 SMART WD40_4 608 646 IPR001680 GO:0005515(InterPro)
Cco07g0064 1194 SMART WD40_4 476 516 IPR001680 GO:0005515(InterPro)
Cco07g0064 1194 SMART WD40_4 649 689 IPR001680 GO:0005515(InterPro)
Cco07g0064 1194 FunFam U3 small nucleolar RNA-associated protein 18 homolog 467 781 - -
Cco07g0064 1194 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 614 649 - -
Cco07g0064 1194 MobiDBLite consensus disorder prediction 251 268 - -
Cco07g0064 1194 Pfam Magnesium transporter MRS2-like 846 1121 - -
Cco07g0064 1194 MobiDBLite consensus disorder prediction 409 434 - -
Cco07g0064 1194 SUPERFAMILY CAD & PB1 domains 112 215 - -
Cco07g0064 1194 Pfam AUX/IAA family 23 223 IPR033389 -
Cco07g0064 1194 ProSiteProfiles Trp-Asp (WD) repeats profile. 614 655 IPR001680 GO:0005515(InterPro)
Cco07g0064 1194 FunFam Auxin-responsive protein 110 226 - -
Cco07g0064 1194 ProSiteProfiles PB1 domain profile. 114 216 IPR053793 -
Cco07g0064 1194 Coils Coil 269 289 - -
Cco07g0064 1194 Gene3D - 466 780 IPR015943 GO:0005515(InterPro)
Cco07g0064 1194 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 1130 1181 IPR045863 -
Cco07g0064 1194 PANTHER WD-REPEAT PROTEIN-RELATED 270 778 IPR045161 GO:0006364(InterPro)|GO:0032040(PANTHER)|GO:0034388(PANTHER)
Cco07g0064 1194 Pfam WD domain, G-beta repeat 489 515 IPR001680 GO:0005515(InterPro)
Cco07g0064 1194 Pfam WD domain, G-beta repeat 665 689 IPR001680 GO:0005515(InterPro)
Cco07g0064 1194 Pfam WD domain, G-beta repeat 611 646 IPR001680 GO:0005515(InterPro)
Cco07g0064 1194 SUPERFAMILY WD40 repeat-like 487 778 IPR036322 GO:0005515(InterPro)
Cco07g0064 1194 MobiDBLite consensus disorder prediction 922 945 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0064 K14553 - - csv:101208908 928.317
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0064 Cco-Chr7:611745 Cco09g0724 Cco-Chr9:6596930 6.20E-53 dispersed
Cco02g0023 Cco-Chr2:276226 Cco07g0064 Cco-Chr7:611745 7.30E-84 transposed
Cco02g0767 Cco-Chr2:8113785 Cco07g0064 Cco-Chr7:611745 1.00E-73 transposed
Cco02g1326 Cco-Chr2:25087278 Cco07g0064 Cco-Chr7:611745 7.90E-280 transposed
Cco05g1114 Cco-Chr5:10098799 Cco07g0064 Cco-Chr7:611745 9.60E-84 transposed
Cco06g0676 Cco-Chr6:7546172 Cco07g0064 Cco-Chr7:611745 2.20E-144 transposed
Cco08g1198 Cco-Chr8:23709281 Cco07g0064 Cco-Chr7:611745 5.00E-67 transposed
Cco10g1274 Cco-Chr10:25569569 Cco07g0064 Cco-Chr7:611745 8.80E-85 transposed
Cco02g1787 Cco-Chr2:30721262 Cco07g0064 Cco-Chr7:611745 1.10E-34 wgd
Cco05g0546 Cco-Chr5:4357147 Cco07g0064 Cco-Chr7:611745 2.80E-50 wgd
Cco06g0673 Cco-Chr6:7461515 Cco07g0064 Cco-Chr7:611745 5.70E-38 wgd
Cco07g0064 Cco-Chr7:611745 Cco09g0723 Cco-Chr9:6561225 1.00E-39 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco10g1274 . 1 447 MRS2 Gene Family AT1G16010 85.0 1.2e-206 716.1
Cco08g1198 . 88 462 MRS2 Gene Family AT1G16010 52.4 2.8e-107 386.0
Cco06g0676 . 1 365 MRS2 Gene Family AT5G64560 81.0 1.3e-158 556.2
Cco07g0064 . 796 1167 MRS2 Gene Family AT5G64560 68.4 9.0e-131 463.8
Cco02g0767 . 14 495 MRS2 Gene Family AT3G19640 64.4 3.0e-155 545.4
Cco05g1114 . 59 442 MRS2 Gene Family AT3G58970 70.3 1.0e-141 500.4
Cco02g0023 . 59 442 MRS2 Gene Family AT3G58970 70.1 4.9e-141 498.0
Cco08g1198 . 88 462 MRS2 Gene Family AT2G03620 68.4 4.2e-137 485.0
Cco10g1274 . 13 447 MRS2 Gene Family AT2G03620 53.0 3.6e-112 402.1
Cco05g1114 . 59 441 MRS2 Gene Family AT4G28580 50.7 8.0e-93 337.8
Cco06g0676 . 1 327 MRS2 Gene Family AT5G09690 76.1 3.9e-127 451.4
Cco07g0064 . 796 1129 MRS2 Gene Family AT5G09690 63.0 1.0e-106 383.6
Cco10g1274 . 40 383 MRS2 Gene Family AT5G09690 50.3 5.7e-78 288.1
Cco06g0676 . 23 287 MRS2 Gene Family AT5G09720 68.3 1.7e-89 326.2
Cco07g0064 . 831 1089 MRS2 Gene Family AT5G09720 60.5 2.7e-74 275.8
Cco10g1274 . 1 447 MRS2 Gene Family AT1G80900 83.0 2.1e-200 695.3
Cco08g1198 . 80 462 MRS2 Gene Family AT1G80900 53.9 4.0e-106 382.1
Cco01g1551 . 16 455 MRS2 Gene Family AT5G22830 68.6 1.5e-156 549.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002983 1 10 1 1 1 1 2 2 2 1 2 2 2 1 0 2 2 2 2 2 1 1 0 2 0 2 1 1 1 1 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59578 PF02309 AUX_IAA 3.80E-65 CL0072 Cco TR