Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0064 ATGTGGGAAAATTGGGCCAAAAGCCTTAAAAGAAGAAAGGAGAAGGCAGAAACGGTGTCGTTTGAGGAGACAGAGCTGAGGCTAGGGTGGCCTGGAAATAATAATGGAAGATCAGAAATGACAAGGAAGAGAGGGTTATTCCATGAAGAAGAATACTCATCACCCACTCATCAAACAATACTAACAATGCCAGATTTGAAGCTTAATCTTATCTCATCTCAGAGCCCTCCCCCACCCAAGGCAGAAGTGGTGGGTTGGCCACCAATAAGGTCTTATAGGAAGAAGAGGTTGGGGGATGTTCAAAAGGGAAGCAAAGAAGAAGAAATTAGTGATGAAGAAAAGAAAGTGGTGAAGGTTAGCCTTGAAGGTGCACCTTATCTTCGTAAGGTCGACTTGAACATGTTCAACAGCTACACTCAACTTTCCCATGCCTTGGCCAAATTCTTTGCTGCCTTCACCATTGGTAATTTTGGATCCCAAGCAGGTGGGATGAAAGACTTCATGAATGAAAGCAAACTAATAGATTTATTGAATGGTTCTGATTATGTTCCAACCTATCAAGACAAAGATGGTGATTGGATGCTTCTTGGTGATGTTCCATGGCAGATGTTTGTTGAATCTTGCAAGCGTGTACGCATAATGAAAGGAAAGGAAGCCATTGGCCTTGGAGCTGATTGGAAGATGAGTTTAATATCACAAAATGTTACTGTAATTAGTAGTATTCAGAAGGTTACAGGGGAGAATATTGTTGGTTCGTCATCTCCATTGAGAAATGGAGATGCTAATGATGTAGAAAACTCTGGTCTAGATACTACTAGGGCAAAAAAGAGAAAGAAAGAACATAAAAAAGAAGATGAACAACAAAAGGAAATCAAGAAGCTTGAAAACTTTCTTTTTGGATCACTCTATTCCCCTGTTGAATTTGGGAAGGCTGAAGAGCAAAATGGTTTTAATTCTGAGGAGAAAGTTCCTGCTTTGTACATAATGGACCGCTCTGCAAATAATTCCCTTTCTGCATATGAAGATGATTTTGGGCCCCTACATGAGAGTACGAATGAGGAACCTCAGCAAAGAAAAGCAGTATGGGTCGACGAGGAAGAGGAGAAGGCCACGGTTAATATTACTACTGTTAGTAGACTGAGAAAGTTGAGGAAAGAAGAAGATGAGAATTCGATTTCAGGCTCAGAGTATGTGTCAAGATTGAGGGCTCAACATGCCAAGCTAAACCCAGGCACCGAGTGGGCTCAACTTGATGCGCAATCCACGGGTGACAGTGATAACGATGATCGATCATCTGATGATGAAAATGCAGTTGCATTGGCTGATGGTTATGATAATGTTGATTCTATTGATGATATCCTTCGAACGAGTGAGAATCTCGTTGTGAAGAGAGGAGCAAAATTGTTACCTGGTCTTCTTGAATACACAAGACTTGTAGATGCTAACGCAGAGGAGCCATCTAATGGTCCTGTCAATTCGGTTCAGTTTCATTGCAATGCTCAGTTACTGCTAGCCACTGGGTTGGATCGAAAGCTTAGATTTTTTCAGATTGATGGCAAACGAAATACCAAAATTCAAAGCATTTTCCTTGAGGATTGCCCTATACGAAAGGCATCATTCTTGCCTGATGGATCTCAGGTTATCATAGCTGGGAGGAGAAAGTTCTTCTATAGCCTCGATTTAGTGAAAGCAAAAGTAGATAAAATTGGCCCTCTTGTAGGTCGAGACGAGAAAAGCCTTGAAGTTTTTGAAGTTTCTCCTGATTCTAGCACAGTCGCATTTATTGGTAATGAAGGCTACATCCTGTTAGTGTCAACCAAAACAAAGGAGCTCATCGGAACGCTTAAGATGAATGGAAGCGTTCGTTCTTTGGCATTCGCAGACAATGGACAACAGCTATTGAGCTCTGGCGGTGACGGGCAGGTCTACCATTGGGATTTACGAACAAGAACGTGCATACACAAGGGTGTCGACGAAGGTTGCATCAATGGTACTGCATTATGTACATCTCCAAATGGAGCATTGTTTGCAGCTGGTTCTGACAGTGGGATTGTTAACATCTACAATAGACAAGAATTCTTAGGGGGAAAGAAGAAGCCACTGAAAGCCATTGAGAATCTGACCACCAAAGTAGACTTTCTTAAATTCAATTATGATGCTCAAATTTTGGCCATCTGTTCAAGAATGAAGAAAAGTAGTTTGAAGTTGATACATGTTCCTTCTTTTACGGTATTTTCGAACTGGCCACCGCCGAAGAAGAACCTTCAATACCCTTCATGTTTGGATTTCAGTCCTGAAGGAGGTTACATGGCTGTTGGAAATGCTGCTGGAAAGTACAAGAAGAGCAATAATAATGTTTGTGGGATCGAAATCTTAGCTTCAGAGATGGCTGGAGATGGATTTGTTATCCCTGTGGAATCTCAGGTGAGTTCGGTGAAGAAGAAGAAGAAGACGACGACGACGACGACGAAGAAGAAGAATACTGCGATTTCCACGAGCTGGGTTTCGTTGGACCATGAAGGAAGGAGTACGATTTTGGATGTGGATAAGTATGCGATTATGCAAAGAGTTCAGATTAATGCGAGAGATCTTCGGCTTCTCGATCCTCTCTTGTCGTATCCTTCCACTATCTTGGGCAGAGAAAGAGTGATTGTTCTTAATTTGGAGCACATCAAGTCAATTATCACTGCGGACGAGGTGCTGCTTAGAGATCCAATGGATGAAAATGTAGTTCCAATTGTTGAAGAACTGCAGAGACGGTTGCCTTCCACAACTTCCATATACCAAGGACAAGGGGAAGAAGAAGAGCCTTCTACCACGCAAAATGAGTCCGCTGAAAACGAATTTCCATTTGAATTCCGCGCTTTAGAGGTCGCACTCGAAGCAATTTGTAGTTTTCTTGATGCACGCACAAGAGAACTAGAGACTGATACATATCCTGCTTTAGATGACCTGACCTCCAAGATTAGCAGTCGTAACTTGGACCGAGTGCGCAAACTGAAGAGTGCAATGACAAGGTTGACAAATCGGGTGCAAAAGGTTAGGGATGAACTTGAACAACTTCTGGATGACGACGACGACATGGCAGAACTTTACTTGTCACGAAAAGTAGCTGGCACCCCTGAAAGTGGCTTCGGGACTCCAATTTGGTTTCTTGCGTCTCCTAAGGACTATTCAAAGATGTCTAAAACAAGTAGAGCAAGTGTGATTACTATTCGAGGAGAGAATGATGTGGAGGAACTAGAAATGCTACTCGAGGCTTATTTTATGCAAATTGAAGGTACATTAAACAAACTAATCACGTTGCGGGAGTACATCGATGACACGGAGGATTACATCAATATTCAGCTTGACAATCACAGGAATCAACTTATTCAGCTAGAACTCTTTTTGAGCTCTGGGACTGTTTGTTTGTCTATTTATTCTTTAGTGACTGCAATATTTGGAATGAATATCCCATATACCTGGAAGGAAGATCATGAACATGTATTCAAATGGGTGGTCATCCTGACAGGAATAGTTTGTGCAACCATTTATGTGTCACTAAGCTCGTATGCGCGATACAAAGGTCTCGTTGGATCTTGA 3585 42.01 MWENWAKSLKRRKEKAETVSFEETELRLGWPGNNNGRSEMTRKRGLFHEEEYSSPTHQTILTMPDLKLNLISSQSPPPPKAEVVGWPPIRSYRKKRLGDVQKGSKEEEISDEEKKVVKVSLEGAPYLRKVDLNMFNSYTQLSHALAKFFAAFTIGNFGSQAGGMKDFMNESKLIDLLNGSDYVPTYQDKDGDWMLLGDVPWQMFVESCKRVRIMKGKEAIGLGADWKMSLISQNVTVISSIQKVTGENIVGSSSPLRNGDANDVENSGLDTTRAKKRKKEHKKEDEQQKEIKKLENFLFGSLYSPVEFGKAEEQNGFNSEEKVPALYIMDRSANNSLSAYEDDFGPLHESTNEEPQQRKAVWVDEEEEKATVNITTVSRLRKLRKEEDENSISGSEYVSRLRAQHAKLNPGTEWAQLDAQSTGDSDNDDRSSDDENAVALADGYDNVDSIDDILRTSENLVVKRGAKLLPGLLEYTRLVDANAEEPSNGPVNSVQFHCNAQLLLATGLDRKLRFFQIDGKRNTKIQSIFLEDCPIRKASFLPDGSQVIIAGRRKFFYSLDLVKAKVDKIGPLVGRDEKSLEVFEVSPDSSTVAFIGNEGYILLVSTKTKELIGTLKMNGSVRSLAFADNGQQLLSSGGDGQVYHWDLRTRTCIHKGVDEGCINGTALCTSPNGALFAAGSDSGIVNIYNRQEFLGGKKKPLKAIENLTTKVDFLKFNYDAQILAICSRMKKSSLKLIHVPSFTVFSNWPPPKKNLQYPSCLDFSPEGGYMAVGNAAGKYKKSNNNVCGIEILASEMAGDGFVIPVESQVSSVKKKKKTTTTTTKKKNTAISTSWVSLDHEGRSTILDVDKYAIMQRVQINARDLRLLDPLLSYPSTILGRERVIVLNLEHIKSIITADEVLLRDPMDENVVPIVEELQRRLPSTTSIYQGQGEEEEPSTTQNESAENEFPFEFRALEVALEAICSFLDARTRELETDTYPALDDLTSKISSRNLDRVRKLKSAMTRLTNRVQKVRDELEQLLDDDDDMAELYLSRKVAGTPESGFGTPIWFLASPKDYSKMSKTSRASVITIRGENDVEELEMLLEAYFMQIEGTLNKLITLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVTAIFGMNIPYTWKEDHEHVFKWVVILTGIVCATIYVSLSSYARYKGLVGS 1194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 611745 626614 + CcPI632755_07g000640.1 Cco07g0064 182717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0064 1194 Gene3D Magnesium transport protein CorA, transmembrane region 909 1124 - -
Cco07g0064 1194 Gene3D - 108 227 - -
Cco07g0064 1194 MobiDBLite consensus disorder prediction 251 288 - -
Cco07g0064 1194 Gene3D - 816 905 - -
Cco07g0064 1194 Coils Coil 997 1024 - -
Cco07g0064 1194 CDD Mrs2_Mfm1p-like 834 1191 IPR039204 -
Cco07g0064 1194 FunFam Magnesium transporter MRS2-1 821 905 - -
Cco07g0064 1194 MobiDBLite consensus disorder prediction 269 288 - -
Cco07g0064 1194 SMART WD40_4 608 646 IPR001680 GO:0005515(InterPro)
Cco07g0064 1194 SMART WD40_4 476 516 IPR001680 GO:0005515(InterPro)
Cco07g0064 1194 SMART WD40_4 649 689 IPR001680 GO:0005515(InterPro)
Cco07g0064 1194 FunFam U3 small nucleolar RNA-associated protein 18 homolog 467 781 - -
Cco07g0064 1194 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 614 649 - -
Cco07g0064 1194 MobiDBLite consensus disorder prediction 251 268 - -
Cco07g0064 1194 Pfam Magnesium transporter MRS2-like 846 1121 - -
Cco07g0064 1194 MobiDBLite consensus disorder prediction 409 434 - -
Cco07g0064 1194 SUPERFAMILY CAD & PB1 domains 112 215 - -
Cco07g0064 1194 Pfam AUX/IAA family 23 223 IPR033389 -
Cco07g0064 1194 ProSiteProfiles Trp-Asp (WD) repeats profile. 614 655 IPR001680 GO:0005515(InterPro)
Cco07g0064 1194 FunFam Auxin-responsive protein 110 226 - -
Cco07g0064 1194 ProSiteProfiles PB1 domain profile. 114 216 IPR053793 -
Cco07g0064 1194 Coils Coil 269 289 - -
Cco07g0064 1194 Gene3D - 466 780 IPR015943 GO:0005515(InterPro)
Cco07g0064 1194 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 1130 1181 IPR045863 -
Cco07g0064 1194 PANTHER WD-REPEAT PROTEIN-RELATED 270 778 IPR045161 GO:0006364(InterPro)|GO:0032040(PANTHER)|GO:0034388(PANTHER)
Cco07g0064 1194 Pfam WD domain, G-beta repeat 489 515 IPR001680 GO:0005515(InterPro)
Cco07g0064 1194 Pfam WD domain, G-beta repeat 665 689 IPR001680 GO:0005515(InterPro)
Cco07g0064 1194 Pfam WD domain, G-beta repeat 611 646 IPR001680 GO:0005515(InterPro)
Cco07g0064 1194 SUPERFAMILY WD40 repeat-like 487 778 IPR036322 GO:0005515(InterPro)
Cco07g0064 1194 MobiDBLite consensus disorder prediction 922 945 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0064 Cco-Chr7:611745 Cco09g0724 Cco-Chr9:6596930 6.20E-53 dispersed
Cco02g0023 Cco-Chr2:276226 Cco07g0064 Cco-Chr7:611745 7.30E-84 transposed
Cco02g0767 Cco-Chr2:8113785 Cco07g0064 Cco-Chr7:611745 1.00E-73 transposed
Cco02g1326 Cco-Chr2:25087278 Cco07g0064 Cco-Chr7:611745 7.90E-280 transposed
Cco05g1114 Cco-Chr5:10098799 Cco07g0064 Cco-Chr7:611745 9.60E-84 transposed
Cco06g0676 Cco-Chr6:7546172 Cco07g0064 Cco-Chr7:611745 2.20E-144 transposed
Cco08g1198 Cco-Chr8:23709281 Cco07g0064 Cco-Chr7:611745 5.00E-67 transposed
Cco10g1274 Cco-Chr10:25569569 Cco07g0064 Cco-Chr7:611745 8.80E-85 transposed
Cco02g1787 Cco-Chr2:30721262 Cco07g0064 Cco-Chr7:611745 1.10E-34 wgd
Cco05g0546 Cco-Chr5:4357147 Cco07g0064 Cco-Chr7:611745 2.80E-50 wgd
Cco06g0673 Cco-Chr6:7461515 Cco07g0064 Cco-Chr7:611745 5.70E-38 wgd
Cco07g0064 Cco-Chr7:611745 Cco09g0723 Cco-Chr9:6561225 1.00E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59578 PF02309 AUX_IAA 3.80E-65 CL0072 Cco TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0064 K14553 - csv:101208908 928.317