Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco07g0064 | ATGTGGGAAAATTGGGCCAAAAGCCTTAAAAGAAGAAAGGAGAAGGCAGAAACGGTGTCGTTTGAGGAGACAGAGCTGAGGCTAGGGTGGCCTGGAAATAATAATGGAAGATCAGAAATGACAAGGAAGAGAGGGTTATTCCATGAAGAAGAATACTCATCACCCACTCATCAAACAATACTAACAATGCCAGATTTGAAGCTTAATCTTATCTCATCTCAGAGCCCTCCCCCACCCAAGGCAGAAGTGGTGGGTTGGCCACCAATAAGGTCTTATAGGAAGAAGAGGTTGGGGGATGTTCAAAAGGGAAGCAAAGAAGAAGAAATTAGTGATGAAGAAAAGAAAGTGGTGAAGGTTAGCCTTGAAGGTGCACCTTATCTTCGTAAGGTCGACTTGAACATGTTCAACAGCTACACTCAACTTTCCCATGCCTTGGCCAAATTCTTTGCTGCCTTCACCATTGGTAATTTTGGATCCCAAGCAGGTGGGATGAAAGACTTCATGAATGAAAGCAAACTAATAGATTTATTGAATGGTTCTGATTATGTTCCAACCTATCAAGACAAAGATGGTGATTGGATGCTTCTTGGTGATGTTCCATGGCAGATGTTTGTTGAATCTTGCAAGCGTGTACGCATAATGAAAGGAAAGGAAGCCATTGGCCTTGGAGCTGATTGGAAGATGAGTTTAATATCACAAAATGTTACTGTAATTAGTAGTATTCAGAAGGTTACAGGGGAGAATATTGTTGGTTCGTCATCTCCATTGAGAAATGGAGATGCTAATGATGTAGAAAACTCTGGTCTAGATACTACTAGGGCAAAAAAGAGAAAGAAAGAACATAAAAAAGAAGATGAACAACAAAAGGAAATCAAGAAGCTTGAAAACTTTCTTTTTGGATCACTCTATTCCCCTGTTGAATTTGGGAAGGCTGAAGAGCAAAATGGTTTTAATTCTGAGGAGAAAGTTCCTGCTTTGTACATAATGGACCGCTCTGCAAATAATTCCCTTTCTGCATATGAAGATGATTTTGGGCCCCTACATGAGAGTACGAATGAGGAACCTCAGCAAAGAAAAGCAGTATGGGTCGACGAGGAAGAGGAGAAGGCCACGGTTAATATTACTACTGTTAGTAGACTGAGAAAGTTGAGGAAAGAAGAAGATGAGAATTCGATTTCAGGCTCAGAGTATGTGTCAAGATTGAGGGCTCAACATGCCAAGCTAAACCCAGGCACCGAGTGGGCTCAACTTGATGCGCAATCCACGGGTGACAGTGATAACGATGATCGATCATCTGATGATGAAAATGCAGTTGCATTGGCTGATGGTTATGATAATGTTGATTCTATTGATGATATCCTTCGAACGAGTGAGAATCTCGTTGTGAAGAGAGGAGCAAAATTGTTACCTGGTCTTCTTGAATACACAAGACTTGTAGATGCTAACGCAGAGGAGCCATCTAATGGTCCTGTCAATTCGGTTCAGTTTCATTGCAATGCTCAGTTACTGCTAGCCACTGGGTTGGATCGAAAGCTTAGATTTTTTCAGATTGATGGCAAACGAAATACCAAAATTCAAAGCATTTTCCTTGAGGATTGCCCTATACGAAAGGCATCATTCTTGCCTGATGGATCTCAGGTTATCATAGCTGGGAGGAGAAAGTTCTTCTATAGCCTCGATTTAGTGAAAGCAAAAGTAGATAAAATTGGCCCTCTTGTAGGTCGAGACGAGAAAAGCCTTGAAGTTTTTGAAGTTTCTCCTGATTCTAGCACAGTCGCATTTATTGGTAATGAAGGCTACATCCTGTTAGTGTCAACCAAAACAAAGGAGCTCATCGGAACGCTTAAGATGAATGGAAGCGTTCGTTCTTTGGCATTCGCAGACAATGGACAACAGCTATTGAGCTCTGGCGGTGACGGGCAGGTCTACCATTGGGATTTACGAACAAGAACGTGCATACACAAGGGTGTCGACGAAGGTTGCATCAATGGTACTGCATTATGTACATCTCCAAATGGAGCATTGTTTGCAGCTGGTTCTGACAGTGGGATTGTTAACATCTACAATAGACAAGAATTCTTAGGGGGAAAGAAGAAGCCACTGAAAGCCATTGAGAATCTGACCACCAAAGTAGACTTTCTTAAATTCAATTATGATGCTCAAATTTTGGCCATCTGTTCAAGAATGAAGAAAAGTAGTTTGAAGTTGATACATGTTCCTTCTTTTACGGTATTTTCGAACTGGCCACCGCCGAAGAAGAACCTTCAATACCCTTCATGTTTGGATTTCAGTCCTGAAGGAGGTTACATGGCTGTTGGAAATGCTGCTGGAAAGTACAAGAAGAGCAATAATAATGTTTGTGGGATCGAAATCTTAGCTTCAGAGATGGCTGGAGATGGATTTGTTATCCCTGTGGAATCTCAGGTGAGTTCGGTGAAGAAGAAGAAGAAGACGACGACGACGACGACGAAGAAGAAGAATACTGCGATTTCCACGAGCTGGGTTTCGTTGGACCATGAAGGAAGGAGTACGATTTTGGATGTGGATAAGTATGCGATTATGCAAAGAGTTCAGATTAATGCGAGAGATCTTCGGCTTCTCGATCCTCTCTTGTCGTATCCTTCCACTATCTTGGGCAGAGAAAGAGTGATTGTTCTTAATTTGGAGCACATCAAGTCAATTATCACTGCGGACGAGGTGCTGCTTAGAGATCCAATGGATGAAAATGTAGTTCCAATTGTTGAAGAACTGCAGAGACGGTTGCCTTCCACAACTTCCATATACCAAGGACAAGGGGAAGAAGAAGAGCCTTCTACCACGCAAAATGAGTCCGCTGAAAACGAATTTCCATTTGAATTCCGCGCTTTAGAGGTCGCACTCGAAGCAATTTGTAGTTTTCTTGATGCACGCACAAGAGAACTAGAGACTGATACATATCCTGCTTTAGATGACCTGACCTCCAAGATTAGCAGTCGTAACTTGGACCGAGTGCGCAAACTGAAGAGTGCAATGACAAGGTTGACAAATCGGGTGCAAAAGGTTAGGGATGAACTTGAACAACTTCTGGATGACGACGACGACATGGCAGAACTTTACTTGTCACGAAAAGTAGCTGGCACCCCTGAAAGTGGCTTCGGGACTCCAATTTGGTTTCTTGCGTCTCCTAAGGACTATTCAAAGATGTCTAAAACAAGTAGAGCAAGTGTGATTACTATTCGAGGAGAGAATGATGTGGAGGAACTAGAAATGCTACTCGAGGCTTATTTTATGCAAATTGAAGGTACATTAAACAAACTAATCACGTTGCGGGAGTACATCGATGACACGGAGGATTACATCAATATTCAGCTTGACAATCACAGGAATCAACTTATTCAGCTAGAACTCTTTTTGAGCTCTGGGACTGTTTGTTTGTCTATTTATTCTTTAGTGACTGCAATATTTGGAATGAATATCCCATATACCTGGAAGGAAGATCATGAACATGTATTCAAATGGGTGGTCATCCTGACAGGAATAGTTTGTGCAACCATTTATGTGTCACTAAGCTCGTATGCGCGATACAAAGGTCTCGTTGGATCTTGA | 3585 | 42.01 | MWENWAKSLKRRKEKAETVSFEETELRLGWPGNNNGRSEMTRKRGLFHEEEYSSPTHQTILTMPDLKLNLISSQSPPPPKAEVVGWPPIRSYRKKRLGDVQKGSKEEEISDEEKKVVKVSLEGAPYLRKVDLNMFNSYTQLSHALAKFFAAFTIGNFGSQAGGMKDFMNESKLIDLLNGSDYVPTYQDKDGDWMLLGDVPWQMFVESCKRVRIMKGKEAIGLGADWKMSLISQNVTVISSIQKVTGENIVGSSSPLRNGDANDVENSGLDTTRAKKRKKEHKKEDEQQKEIKKLENFLFGSLYSPVEFGKAEEQNGFNSEEKVPALYIMDRSANNSLSAYEDDFGPLHESTNEEPQQRKAVWVDEEEEKATVNITTVSRLRKLRKEEDENSISGSEYVSRLRAQHAKLNPGTEWAQLDAQSTGDSDNDDRSSDDENAVALADGYDNVDSIDDILRTSENLVVKRGAKLLPGLLEYTRLVDANAEEPSNGPVNSVQFHCNAQLLLATGLDRKLRFFQIDGKRNTKIQSIFLEDCPIRKASFLPDGSQVIIAGRRKFFYSLDLVKAKVDKIGPLVGRDEKSLEVFEVSPDSSTVAFIGNEGYILLVSTKTKELIGTLKMNGSVRSLAFADNGQQLLSSGGDGQVYHWDLRTRTCIHKGVDEGCINGTALCTSPNGALFAAGSDSGIVNIYNRQEFLGGKKKPLKAIENLTTKVDFLKFNYDAQILAICSRMKKSSLKLIHVPSFTVFSNWPPPKKNLQYPSCLDFSPEGGYMAVGNAAGKYKKSNNNVCGIEILASEMAGDGFVIPVESQVSSVKKKKKTTTTTTKKKNTAISTSWVSLDHEGRSTILDVDKYAIMQRVQINARDLRLLDPLLSYPSTILGRERVIVLNLEHIKSIITADEVLLRDPMDENVVPIVEELQRRLPSTTSIYQGQGEEEEPSTTQNESAENEFPFEFRALEVALEAICSFLDARTRELETDTYPALDDLTSKISSRNLDRVRKLKSAMTRLTNRVQKVRDELEQLLDDDDDMAELYLSRKVAGTPESGFGTPIWFLASPKDYSKMSKTSRASVITIRGENDVEELEMLLEAYFMQIEGTLNKLITLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVTAIFGMNIPYTWKEDHEHVFKWVVILTGIVCATIYVSLSSYARYKGLVGS | 1194 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 611745 | 626614 | + | CcPI632755_07g000640.1 | Cco07g0064 | 182717 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco07g0064 | 1194 | Gene3D | Magnesium transport protein CorA, transmembrane region | 909 | 1124 | - | - | |
Cco07g0064 | 1194 | Gene3D | - | 108 | 227 | - | - | |
Cco07g0064 | 1194 | MobiDBLite | consensus disorder prediction | 251 | 288 | - | - | |
Cco07g0064 | 1194 | Gene3D | - | 816 | 905 | - | - | |
Cco07g0064 | 1194 | Coils | Coil | 997 | 1024 | - | - | |
Cco07g0064 | 1194 | CDD | Mrs2_Mfm1p-like | 834 | 1191 | IPR039204 | - | |
Cco07g0064 | 1194 | FunFam | Magnesium transporter MRS2-1 | 821 | 905 | - | - | |
Cco07g0064 | 1194 | MobiDBLite | consensus disorder prediction | 269 | 288 | - | - | |
Cco07g0064 | 1194 | SMART | WD40_4 | 608 | 646 | IPR001680 | GO:0005515(InterPro) | |
Cco07g0064 | 1194 | SMART | WD40_4 | 476 | 516 | IPR001680 | GO:0005515(InterPro) | |
Cco07g0064 | 1194 | SMART | WD40_4 | 649 | 689 | IPR001680 | GO:0005515(InterPro) | |
Cco07g0064 | 1194 | FunFam | U3 small nucleolar RNA-associated protein 18 homolog | 467 | 781 | - | - | |
Cco07g0064 | 1194 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 614 | 649 | - | - | |
Cco07g0064 | 1194 | MobiDBLite | consensus disorder prediction | 251 | 268 | - | - | |
Cco07g0064 | 1194 | Pfam | Magnesium transporter MRS2-like | 846 | 1121 | - | - | |
Cco07g0064 | 1194 | MobiDBLite | consensus disorder prediction | 409 | 434 | - | - | |
Cco07g0064 | 1194 | SUPERFAMILY | CAD & PB1 domains | 112 | 215 | - | - | |
Cco07g0064 | 1194 | Pfam | AUX/IAA family | 23 | 223 | IPR033389 | - | |
Cco07g0064 | 1194 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 614 | 655 | IPR001680 | GO:0005515(InterPro) | |
Cco07g0064 | 1194 | FunFam | Auxin-responsive protein | 110 | 226 | - | - | |
Cco07g0064 | 1194 | ProSiteProfiles | PB1 domain profile. | 114 | 216 | IPR053793 | - | |
Cco07g0064 | 1194 | Coils | Coil | 269 | 289 | - | - | |
Cco07g0064 | 1194 | Gene3D | - | 466 | 780 | IPR015943 | GO:0005515(InterPro) | |
Cco07g0064 | 1194 | SUPERFAMILY | Magnesium transport protein CorA, transmembrane region | 1130 | 1181 | IPR045863 | - | |
Cco07g0064 | 1194 | PANTHER | WD-REPEAT PROTEIN-RELATED | 270 | 778 | IPR045161 | GO:0006364(InterPro)|GO:0032040(PANTHER)|GO:0034388(PANTHER) | |
Cco07g0064 | 1194 | Pfam | WD domain, G-beta repeat | 489 | 515 | IPR001680 | GO:0005515(InterPro) | |
Cco07g0064 | 1194 | Pfam | WD domain, G-beta repeat | 665 | 689 | IPR001680 | GO:0005515(InterPro) | |
Cco07g0064 | 1194 | Pfam | WD domain, G-beta repeat | 611 | 646 | IPR001680 | GO:0005515(InterPro) | |
Cco07g0064 | 1194 | SUPERFAMILY | WD40 repeat-like | 487 | 778 | IPR036322 | GO:0005515(InterPro) | |
Cco07g0064 | 1194 | MobiDBLite | consensus disorder prediction | 922 | 945 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco07g0064 | Cco-Chr7:611745 | Cco09g0724 | Cco-Chr9:6596930 | 6.20E-53 | dispersed | |
Cco02g0023 | Cco-Chr2:276226 | Cco07g0064 | Cco-Chr7:611745 | 7.30E-84 | transposed | |
Cco02g0767 | Cco-Chr2:8113785 | Cco07g0064 | Cco-Chr7:611745 | 1.00E-73 | transposed | |
Cco02g1326 | Cco-Chr2:25087278 | Cco07g0064 | Cco-Chr7:611745 | 7.90E-280 | transposed | |
Cco05g1114 | Cco-Chr5:10098799 | Cco07g0064 | Cco-Chr7:611745 | 9.60E-84 | transposed | |
Cco06g0676 | Cco-Chr6:7546172 | Cco07g0064 | Cco-Chr7:611745 | 2.20E-144 | transposed | |
Cco08g1198 | Cco-Chr8:23709281 | Cco07g0064 | Cco-Chr7:611745 | 5.00E-67 | transposed | |
Cco10g1274 | Cco-Chr10:25569569 | Cco07g0064 | Cco-Chr7:611745 | 8.80E-85 | transposed | |
Cco02g1787 | Cco-Chr2:30721262 | Cco07g0064 | Cco-Chr7:611745 | 1.10E-34 | wgd | |
Cco05g0546 | Cco-Chr5:4357147 | Cco07g0064 | Cco-Chr7:611745 | 2.80E-50 | wgd | |
Cco06g0673 | Cco-Chr6:7461515 | Cco07g0064 | Cco-Chr7:611745 | 5.70E-38 | wgd | |
Cco07g0064 | Cco-Chr7:611745 | Cco09g0723 | Cco-Chr9:6561225 | 1.00E-39 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59578 | PF02309 | AUX_IAA | 3.80E-65 | CL0072 | Cco | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco07g0064 | K14553 | - | csv:101208908 | 928.317 |