Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0065 ATGAACAAATGTTCGACAAGACATGCAGAGTTGAGGTACGTGGTTGAAGTTTTTGATTCTTTTTGGGGTATGGCGAATCGGGTTGTTAAAGTGAAGAGGGAAGCCATTGCAGCATGCATAACTTGCCCACTTTGTAATAAGCTCTTGAAAGAAGCAACCACCATTTCTGAATGTCTTCATACTTTTTGCAGAAAGTGCATATCCGATAAGATTTCTGATGAGGAACTAGAAAACTGTCCAGTATGTAATATTGACCTCGGGTGTGTCCCACTGGAGAAATTAAGGCCAGACCACAATCTAGAAGATTTAAGGGCCAAGATTTTCCCTAGTAAAAGGAGAAAATTCAAGACGCCGGAAGTTGGTCCTGTTATTCTACCACCAGTTAGAAGAAAGGAAAGATCACTTTCCTCATTGGTGGTCAATAGTCCAAGAGTGTCAAGTCATGCTACCGCAACTGGAAGAAGAACAGCAGCTGCTGCTGCAAGAATTGGTTCTATTTTACGAACACCAAGAGTCTCTTCTGAGAAGCGAGTGAAGAAAGAGGATGATTCCATGGACGACGGTTCAGAGAGCTCAAGTTCTCTTGAGACATCAGACAAATTCAATCAGAATAAAAGGCCGGATTCCAGTCCTACCAAGTCGACCATACCTTTGCGCAATAAAGAAGCCGAAAATGGTGTTAACTCAGTGGAAGGGAACTTGGATATCTGGAAACCTCTAAATTTCTTAGTTGAGGTTGCAAATAGGAGTAAATGTTCCAAATCTAATTCACAAGGATTCGAAACTAAAGTTGAGCCTGGAGAAGTCGATGGAAGTGAAGCTCAGGCCAGCAAATCTAGAAATAGGGAAGGCAAACGCAAGCAAAAACGTGAGAATGGAAAAACTAGAGCAGACCCAGTATCTCCAGAAACTGAAAAACCTAAGAAACTGCGTAGGGTCCGCCAGAAAAGGGAATCTTTTTATGGGGACTCCAGCCTTACACCTCAGGTTGTCTTGGATGCCTCTAGTGCTCGGCATGAAAGAAAAGCCGGTCCGATTTGGCTCTCACTCATAGCCTCTGATCAGGAAGGAGATGTATCGTTGCCACAAATTCCTGCTAAGTATTTGAGAATAAAGGATAGAAACTTGCCAGTATCATTTGTCCAGAAGTACCTTATGAGAAAGCTGGATCTCCCAAGTGAATCAGAGGTTGAAGTCAAGTGTATGGGACATCCAGTAGTTCCCACTCTGGATTTGCATAGTTTAGTTGATTTGTGGCTACAAACAGCATCAACCTCCGAAAAGATCCCGGCATCGATTGGCTCATCGGCGGAGGATTTCATTATGGTTCTCTACTATGCTAGAAAGATCACAGTTTCTTGA 1362 42.95 MNKCSTRHAELRYVVEVFDSFWGMANRVVKVKREAIAACITCPLCNKLLKEATTISECLHTFCRKCISDKISDEELENCPVCNIDLGCVPLEKLRPDHNLEDLRAKIFPSKRRKFKTPEVGPVILPPVRRKERSLSSLVVNSPRVSSHATATGRRTAAAAARIGSILRTPRVSSEKRVKKEDDSMDDGSESSSSLETSDKFNQNKRPDSSPTKSTIPLRNKEAENGVNSVEGNLDIWKPLNFLVEVANRSKCSKSNSQGFETKVEPGEVDGSEAQASKSRNREGKRKQKRENGKTRADPVSPETEKPKKLRRVRQKRESFYGDSSLTPQVVLDASSARHERKAGPIWLSLIASDQEGDVSLPQIPAKYLRIKDRNLPVSFVQKYLMRKLDLPSESEVEVKCMGHPVVPTLDLHSLVDLWLQTASTSEKIPASIGSSAEDFIMVLYYARKITVS 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 631333 635344 + CcPI632755_07g000650.1 Cco07g0065 182718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0065 453 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 25 133 IPR013083 -
Cco07g0065 453 Gene3D - 327 432 - -
Cco07g0065 453 MobiDBLite consensus disorder prediction 190 222 - -
Cco07g0065 453 SUPERFAMILY RING/U-box 38 107 - -
Cco07g0065 453 ProSiteProfiles Zinc finger RING-type profile. 42 83 IPR001841 -
Cco07g0065 453 CDD RING-HC_PCGF 40 83 - -
Cco07g0065 453 ProSitePatterns Zinc finger RING-type signature. 58 67 IPR017907 -
Cco07g0065 453 MobiDBLite consensus disorder prediction 251 318 - -
Cco07g0065 453 Pfam Zinc finger, C3HC4 type (RING finger) 42 82 - -
Cco07g0065 453 MobiDBLite consensus disorder prediction 275 309 - -
Cco07g0065 453 MobiDBLite consensus disorder prediction 172 187 - -
Cco07g0065 453 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 27 449 IPR044807 GO:0004842(InterPro)
Cco07g0065 453 SMART ring_2 42 82 IPR001841 -
Cco07g0065 453 MobiDBLite consensus disorder prediction 168 224 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1796 Cco-Chr2:30805351 Cco07g0065 Cco-Chr7:631333 5.30E-114 wgd
Cco05g0545 Cco-Chr5:4348285 Cco07g0065 Cco-Chr7:631333 2.70E-61 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0065 K16277 - csv:101220692 764.607