Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0068 ATGGAAGAGGTTGAAGAAGCTAACAAATCAGCCATAGAGAGCTGCCATGGAGTTTTGAATCTTTTAGTTCAACCTTCTCAAGACCAACTTCATTTCAGGAATCTAATGGTTGAAACTAAAGAAGCTGTTTTCAAGTTCAAGAAAGTTATTTCTCTCTTAAATTCTGGTTTTGGTCATGCCAGAGTTAGAAAATTCAACAAGATTCCTCTCCCTTTGCCTCAAAAATCCCTCTTAGATTCCCCAAATTACACTCCACATCCTCCAAACAAAAATCTTTACCCTTTTCACTCTGGTTTGAATGGTAAAGTTTCAATTTTTTTGGGAAACCCAGATTTAGAATTGAGTCAAAATGACAAGAATTCCCTCCAAATTCCCAAACAATCTCCATCTTTAAACTTCAGCTTCCCTCAGCAGCAGCAGCAGCAACAACAACAACAGAGGATTTTGGCTCATCAGAAACAAATGAAACAGCAAGCAGAAATGATGTTTCTAAGGAATAACAGTGGGATGAACCTGAATTTTGACACATCTAATTGCACATTGACAATGTCATCAGCTAGATCTTTCATTTCTTCATTGAGTATGGATGGCAGTGTCGCCGACGGAAGCTCGTTCCATTTGATCGGACCATCGTCAACGACAACAACGTCGGCCGATAACAAGAGGAAGTTTTCTGCAAGAGGAGATGAAGGAAGCTTGAAATGTGGAAGTACTGGCAAATGCCATTGCTCAAAGAAGAGGAAACATAGAGTGAAGAGATCAATCAAGGTACCTGCCATAAGTAACAAACTTGCCGATATCCCTTCTGATGATTATTCATGGAGAAAGTATGGGCAGAAGCCAATTAAGGGCTCTCCTCATCCCAGGGGTTACTACAAATGCAGCAGCATGAGAGGTTGTCCGGCGAGAAAGCATGTCGAGCGGTGCTTAGAAGACCCGTCGATGCTTATTGTAACGTATGAAGGAGAGCATAATCACCCGAAAATGTCGACGCAATCTGCACACACTTAG 1011 41.35 MEEVEEANKSAIESCHGVLNLLVQPSQDQLHFRNLMVETKEAVFKFKKVISLLNSGFGHARVRKFNKIPLPLPQKSLLDSPNYTPHPPNKNLYPFHSGLNGKVSIFLGNPDLELSQNDKNSLQIPKQSPSLNFSFPQQQQQQQQQQRILAHQKQMKQQAEMMFLRNNSGMNLNFDTSNCTLTMSSARSFISSLSMDGSVADGSSFHLIGPSSTTTTSADNKRKFSARGDEGSLKCGSTGKCHCSKKRKHRVKRSIKVPAISNKLADIPSDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEDPSMLIVTYEGEHNHPKMSTQSAHT 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 661271 662967 + CcPI632755_07g000680.1 Cco07g0068 182721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0068 336 MobiDBLite consensus disorder prediction 116 146 - -
Cco07g0068 336 SMART WRKY_cls 268 328 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco07g0068 336 Pfam Plant zinc cluster domain 228 266 IPR018872 -
Cco07g0068 336 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 1 332 IPR044810 GO:0003700(InterPro)
Cco07g0068 336 FunFam WRKY transcription factor 65 252 329 - -
Cco07g0068 336 SUPERFAMILY WRKY DNA-binding domain 266 328 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco07g0068 336 Gene3D WRKY domain 252 328 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco07g0068 336 ProSiteProfiles WRKY domain profile. 263 329 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco07g0068 336 MobiDBLite consensus disorder prediction 209 229 - -
Cco07g0068 336 Pfam WRKY DNA -binding domain 270 327 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2915 Cco-Chr5:36685428 Cco07g0068 Cco-Chr7:661271 1.20E-41 dispersed
Cco06g1572 Cco-Chr6:26313127 Cco07g0068 Cco-Chr7:661271 1.70E-38 dispersed
Cco07g0068 Cco-Chr7:661271 Cco07g0258 Cco-Chr7:2622652 5.50E-23 dispersed
Cco07g0068 Cco-Chr7:661271 Cco09g0732 Cco-Chr9:6682005 1.80E-95 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59579 PF03106 WRKY 1.10E-26 CL0274 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0068 - - - 0.0