Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco07g0094 | ATGGCTGCTTCTTCTTCCTCTTCCTCTGCAAATACTAGTGTGTCAGGCAGTGGCGGTGGCGGTGGCGGTGGCTCGCCTTGTGGAGCATGCAAGTTTCTAAGGAGAAAATGTGTGGCTGATTGTATTTTTGCTCCTTACTTTTGCTCAGAGCAAGGGGCTGCAAGATTTGCTGCCATTCATAAAGTGTTTGGTGCAAGTAATGTTTCAAAGTTGTTGCTTCATGTTCCTGTTCATGATCGTTGTGAAGCTGTTGTTACTATTGCTTATGAAGCTCAAGCAAGGATTCATGATCCTGTTTATGGATGTGTTGCTCATATTTTTGCCCTCCAACAACAGGTGGCATATTTACAAACACAGCTAATGCAAGCCAAGGCTCAACTTGCACAAACCCTGATGGATTCAGGAGGTAATATGGAGATTCAATGGACAGGCAATTTCAATAACAATCTCTTCAATGGAATTCCAAATAATTATCAAACTCAGATTATGAACAACCCAGCAGTTTCCCCTCAGAGTTCTTTAGAATCAGCTGCCAACAATGATGAAGCTTTATTATTCATAAATAATCAAAATCACCTTCATGAAAGCCAAAGCAGATCACCAGAAGAATCTCAATTTCTTCAACCATTTCCTAGAAAAAAATTGCCTTCTTCTCATGCTGATCTTGGGGAACTCCAAGCTTTGGCCCTCAGAATGATGAGAAACTAG | 708 | 41.24 | MAASSSSSSANTSVSGSGGGGGGGSPCGACKFLRRKCVADCIFAPYFCSEQGAARFAAIHKVFGASNVSKLLLHVPVHDRCEAVVTIAYEAQARIHDPVYGCVAHIFALQQQVAYLQTQLMQAKAQLAQTLMDSGGNMEIQWTGNFNNNLFNGIPNNYQTQIMNNPAVSPQSSLESAANNDEALLFINNQNHLHESQSRSPEESQFLQPFPRKKLPSSHADLGELQALALRMMRN | 235 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 951063 | 952398 | + | CcPI632755_07g000940.1 | Cco07g0094 | 182747 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco07g0094 | 235 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Cco07g0094 | 235 | PANTHER | LOB DOMAIN CONTAINING PROTEIN | 23 | 198 | - | GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER) | |
Cco07g0094 | 235 | Pfam | Lateral organ boundaries (LOB) domain | 26 | 124 | IPR004883 | - | |
Cco07g0094 | 235 | MobiDBLite | consensus disorder prediction | 193 | 218 | - | - | |
Cco07g0094 | 235 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
Cco07g0094 | 235 | ProSiteProfiles | LOB domain profile. | 25 | 127 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g0262 | Cco-Chr5:2078869 | Cco07g0094 | Cco-Chr7:951063 | 1.60E-38 | dispersed | |
Cco06g0035 | Cco-Chr6:348355 | Cco07g0094 | Cco-Chr7:951063 | 7.60E-43 | dispersed | |
Cco07g0094 | Cco-Chr7:951063 | Cco09g0780 | Cco-Chr9:7184727 | 1.50E-38 | dispersed | |
Cco07g0094 | Cco-Chr7:951063 | Cco07g0095 | Cco-Chr7:960824 | 1.00E-39 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59583 | PF03195 | LOB | 2.70E-36 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco07g0094 | K13944 | - | csv:101214521 | 367.851 |