Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0094 ATGGCTGCTTCTTCTTCCTCTTCCTCTGCAAATACTAGTGTGTCAGGCAGTGGCGGTGGCGGTGGCGGTGGCTCGCCTTGTGGAGCATGCAAGTTTCTAAGGAGAAAATGTGTGGCTGATTGTATTTTTGCTCCTTACTTTTGCTCAGAGCAAGGGGCTGCAAGATTTGCTGCCATTCATAAAGTGTTTGGTGCAAGTAATGTTTCAAAGTTGTTGCTTCATGTTCCTGTTCATGATCGTTGTGAAGCTGTTGTTACTATTGCTTATGAAGCTCAAGCAAGGATTCATGATCCTGTTTATGGATGTGTTGCTCATATTTTTGCCCTCCAACAACAGGTGGCATATTTACAAACACAGCTAATGCAAGCCAAGGCTCAACTTGCACAAACCCTGATGGATTCAGGAGGTAATATGGAGATTCAATGGACAGGCAATTTCAATAACAATCTCTTCAATGGAATTCCAAATAATTATCAAACTCAGATTATGAACAACCCAGCAGTTTCCCCTCAGAGTTCTTTAGAATCAGCTGCCAACAATGATGAAGCTTTATTATTCATAAATAATCAAAATCACCTTCATGAAAGCCAAAGCAGATCACCAGAAGAATCTCAATTTCTTCAACCATTTCCTAGAAAAAAATTGCCTTCTTCTCATGCTGATCTTGGGGAACTCCAAGCTTTGGCCCTCAGAATGATGAGAAACTAG 708 41.24 MAASSSSSSANTSVSGSGGGGGGGSPCGACKFLRRKCVADCIFAPYFCSEQGAARFAAIHKVFGASNVSKLLLHVPVHDRCEAVVTIAYEAQARIHDPVYGCVAHIFALQQQVAYLQTQLMQAKAQLAQTLMDSGGNMEIQWTGNFNNNLFNGIPNNYQTQIMNNPAVSPQSSLESAANNDEALLFINNQNHLHESQSRSPEESQFLQPFPRKKLPSSHADLGELQALALRMMRN 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 951063 952398 + CcPI632755_07g000940.1 Cco07g0094 182747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0094 235 MobiDBLite consensus disorder prediction 1 23 - -
Cco07g0094 235 PANTHER LOB DOMAIN CONTAINING PROTEIN 23 198 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
Cco07g0094 235 Pfam Lateral organ boundaries (LOB) domain 26 124 IPR004883 -
Cco07g0094 235 MobiDBLite consensus disorder prediction 193 218 - -
Cco07g0094 235 MobiDBLite consensus disorder prediction 1 19 - -
Cco07g0094 235 ProSiteProfiles LOB domain profile. 25 127 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0262 Cco-Chr5:2078869 Cco07g0094 Cco-Chr7:951063 1.60E-38 dispersed
Cco06g0035 Cco-Chr6:348355 Cco07g0094 Cco-Chr7:951063 7.60E-43 dispersed
Cco07g0094 Cco-Chr7:951063 Cco09g0780 Cco-Chr9:7184727 1.50E-38 dispersed
Cco07g0094 Cco-Chr7:951063 Cco07g0095 Cco-Chr7:960824 1.00E-39 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59583 PF03195 LOB 2.70E-36 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0094 K13944 - csv:101214521 367.851