Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0101 ATGGAATCCTCTTATTTTTCGTTTTCCGATTCGGATTTCTCGACGGAATCTTCATTCGGATCAGCGGAATCATCATTCTCATGGAGTGAATTTTTTTCGATTCACAGTACCCTAGAAAACTCAATCTCACTACACGAAGAATTTCTCGGGAATCAAACATCGGAATCGGAATCGAAAATTGTAGTGAAGGAAGAAACCGAAGTGAGTTCGATTGATTTCGAGGAGGAGAAAGAAAGGAAGACAACGGAGAAGAGTTACAGAGGAGTGAGACGGCGGCCGTGGGGGAAATACGCGGCGGAGATTAGGGATTCGACGAGACATGGAGTTAGGGTTTGGCTTGGAACTTTTGATAGCCCTGAAGCTGCGGCTTTAGCTTACGATCAAGCGGCATTTTCGATGAGAGGAGCAATGGCGGTGCTGAATTTTCCGGTGGAAATGGTGAGGGAATCACTGAAGGATATTAAGTATCAACTGGAAGAAGGATGTTCGCCGGTGGTGGCTTTGAAGAGGAAACACTCAATGAGAAGGAAATCGGCGGCGGCGGCGGTGAAAAGCCAAGGGGCGGCGGAGAAGAAGAAGATGAAGAAAAACAACAATGTGGTGATTTTAGAAGATTTGGGAACAGAGTATTTGGAGGAACTTTTGATGCTAAGTTCATGA 660 45.61 MESSYFSFSDSDFSTESSFGSAESSFSWSEFFSIHSTLENSISLHEEFLGNQTSESESKIVVKEETEVSSIDFEEEKERKTTEKSYRGVRRRPWGKYAAEIRDSTRHGVRVWLGTFDSPEAAALAYDQAAFSMRGAMAVLNFPVEMVRESLKDIKYQLEEGCSPVVALKRKHSMRRKSAAAAVKSQGAAEKKKMKKNNNVVILEDLGTEYLEELLMLSS 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1034172 1034831 + CcPI632755_07g001010.1 Cco07g0101 182754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0101 219 Gene3D AP2/ERF domain 84 145 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco07g0101 219 ProSiteProfiles AP2/ERF domain profile. 85 143 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco07g0101 219 MobiDBLite consensus disorder prediction 1 21 - -
Cco07g0101 219 PANTHER DNA-BINDING DOMAIN 47 193 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Cco07g0101 219 FunFam Ethylene-responsive transcription factor 2 84 145 - -
Cco07g0101 219 Pfam AP2 domain 85 135 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco07g0101 219 SMART rav1_2 85 149 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco07g0101 219 CDD AP2 86 144 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco07g0101 219 SUPERFAMILY DNA-binding domain 85 145 IPR016177 GO:0003677(InterPro)
Cco07g0101 219 PRINTS Ethylene responsive element binding protein signature 125 145 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco07g0101 219 PRINTS Ethylene responsive element binding protein signature 86 97 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0716 Cco-Chr6:8060725 Cco07g0101 Cco-Chr7:1034172 4.00E-41 dispersed
Cco07g0101 Cco-Chr7:1034172 Cco09g0733 Cco-Chr9:6707222 2.00E-42 dispersed
Cco05g0500 Cco-Chr5:4003503 Cco07g0101 Cco-Chr7:1034172 1.30E-41 wgd
Cco06g0714 Cco-Chr6:8002516 Cco07g0101 Cco-Chr7:1034172 9.50E-21 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59585 PF00847 AP2 5.30E-15 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0101 K14516 - csv:101220325 301.212