Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0102 ATGGGAAAAGAGCAATTAGAAGTACTAAATGCACTTGATGTAGCAAAAACACAATGGTACCATTTCACAGCAATCATAATTGCTGGAATGGGATTCTTCACAGATGCATATGATCTATTTTGCATATCTCTTGTGACAAAATTACTTGGACGAATATACTATCATGTTGATGGTGCAGCAAAGCCAGGGACATTGCCTCCAAATGTTGCTGCTGCTGTTAATGGTGTGGCATTTTGTGGAACTCTAGCAGGCCAACTCTTCTTTGGTTGGTTGGGTGACAAAATGGGAAGAAAAAGAGTTTATGGAATGACTCTAATGTTGATGGTTATATGCTCCATAGGCTCAGGCCTTTCCTTTGGCCACAATTCACAATCTGTTATGACTACTCTTTGCTTCTTTCGATTTTGGCTCGGCTTCGGTATTGGTGGCGATTACCCTCTTTCCGCAACGATCATGTCCGAGTACTCGAATAAGAAGACTCGTGGTGCATTCATTGCTGCAGTGTTTGCTATGCAAGGGTTTGGAATTTTGGGTGGAGGTATATTTGCCATTTTCATCTCTTTGGCATTCAAGGCCAAGTTTGATGCTCCACCTTATGCACTTGATCCAACTAAATCAACTGTGCCACAAGCAGATTACATTTGGAGGATAGTTCTCATGGTTGGGGCTCTTCCTGCTGCTCTTACTTATTATTGGAGGATGAAAATGCCTGAAACGGCACGGTACACGGCTTTGGTAGCAAAAGATACAACTCAAGCTGCATCAGATATGTCAAAAGTTTTGCAGATGGAAATCGAGGTAGAAGCACAAAAGCCTACTACGCATACGCCAAATGCAAATGCAGGTGCAAGTGCATACGGCTTCTTCTCCAAAGAATTCTTCCGTCGCCATGGAACTCACTTACTTGGAACTACAAGTACTTGGTTTTTGCTTGATATTGCATTTTATAGTCAAAACTTGTTCCAAAAAGATATCTTCAGTGCAATTGGATGGATTCCTCCAGCAGCCACTATGAATGCAATTGAAGAAGTTTTTAGAATAGCAAGGGCTCAAACACTCATTGCCCTCTGCAGCACTGTCCCTGGCTATTGGTTCACAGTGGCTTTCATTGACAAAATGGGAAGATTTGCCATTCAACTCATGGGATTCTTCTTCATGACAGTCTTCATGTTTGCTTTAGCCATTCCATACCATCATTGGACTTTGAAGGACAATCGGATTGGCTTTGTTGTCCTCTACTCACTAACATTCTTTTTTGCGAATTTTGGACCGAATGCAACAACTTTCGTTGTCCCAGCTGAAATCTTTCCAGCACGATTCCGTTCTACTTGCCACGGTATATCATCAGCATCTGGGAAGCTTGGAGCTATGGTGGGTGCATTTGGTTTTCTATATTTGGCTCAAAACCAGGACAAGAACAAAACTGATGCAGGATATCCTCCTGGCATTGGTGTTAAGAATTCACTTCTATTGTTGGGTGGACTTAACTTTTTGGGAATTTTGTTTACTTTTCTTGTGCCTGAAGCAAAAGGAAAATCATTGGAAGAGATGTCAGGTGAAAACGAAGATGGAACCACTGGAGAATTGGGGGGCCTACCACATACCAACAATATGATCTCACATGTTTAA 1629 41.87 MGKEQLEVLNALDVAKTQWYHFTAIIIAGMGFFTDAYDLFCISLVTKLLGRIYYHVDGAAKPGTLPPNVAAAVNGVAFCGTLAGQLFFGWLGDKMGRKRVYGMTLMLMVICSIGSGLSFGHNSQSVMTTLCFFRFWLGFGIGGDYPLSATIMSEYSNKKTRGAFIAAVFAMQGFGILGGGIFAIFISLAFKAKFDAPPYALDPTKSTVPQADYIWRIVLMVGALPAALTYYWRMKMPETARYTALVAKDTTQAASDMSKVLQMEIEVEAQKPTTHTPNANAGASAYGFFSKEFFRRHGTHLLGTTSTWFLLDIAFYSQNLFQKDIFSAIGWIPPAATMNAIEEVFRIARAQTLIALCSTVPGYWFTVAFIDKMGRFAIQLMGFFFMTVFMFALAIPYHHWTLKDNRIGFVVLYSLTFFFANFGPNATTFVVPAEIFPARFRSTCHGISSASGKLGAMVGAFGFLYLAQNQDKNKTDAGYPPGIGVKNSLLLLGGLNFLGILFTFLVPEAKGKSLEEMSGENEDGTTGELGGLPHTNNMISHV 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1049884 1051512 + CcPI632755_07g001020.1 Cco07g0102 182755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0102 542 NCBIfam phosphate:H+ symporter 11 520 IPR004738 GO:0005315(InterPro)|GO:0006817(InterPro)|GO:0016020(InterPro)
Cco07g0102 542 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 9 516 - -
Cco07g0102 542 MobiDBLite consensus disorder prediction 515 542 - -
Cco07g0102 542 Pfam Sugar (and other) transporter 26 518 IPR005828 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Cco07g0102 542 FunFam Inorganic phosphate transporter 1-6 20 529 - -
Cco07g0102 542 Gene3D MFS general substrate transporter like domains 272 531 IPR036259 -
Cco07g0102 542 Gene3D MFS general substrate transporter like domains 20 267 IPR036259 -
Cco07g0102 542 ProSiteProfiles Major facilitator superfamily (MFS) profile. 24 511 IPR020846 GO:0022857(InterPro)
Cco07g0102 542 SUPERFAMILY MFS general substrate transporter 12 518 IPR036259 -
Cco07g0102 542 CDD MFS_PhT 25 510 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0102 Cco-Chr7:1049884 Cco08g0685 Cco-Chr8:18155511 2.10E-88 dispersed
Cco07g0119 Cco-Chr7:1283427 Cco07g0102 Cco-Chr7:1049884 0.00E+00 transposed
Cco08g0683 Cco-Chr8:18150366 Cco07g0102 Cco-Chr7:1049884 6.90E-55 transposed
Cco08g0684 Cco-Chr8:18155001 Cco07g0102 Cco-Chr7:1049884 9.20E-55 transposed
Cco11g1953 Cco-Chr11:32071316 Cco07g0102 Cco-Chr7:1049884 8.20E-141 transposed
Cco05g0497 Cco-Chr5:3970309 Cco07g0102 Cco-Chr7:1049884 1.00E-233 wgd
Cco06g0725 Cco-Chr6:8259503 Cco07g0102 Cco-Chr7:1049884 4.10E-238 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0102 K08176 - mtr:25499257 900.582