Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0122 ATGAAGAGTGACGCTAAGATTAAAAGGGGGAGGAGCGCTGGAAAAAGGGAGAATATTAGGAAGATAATGAAGTGTTTATGTTCTGGAGAGAAAACAGCTGGGGATGATATGATTCCTGCAGCAGAATCGCCTTCTGCTTTCGAGAATTCAGGAAGTGGACGCTCTTCACGGACTGGGGAGATCGTCAAGAAGCCAGAAATTGGCAATATAGAAGAAGCTGAGTCTTCGCTTCGAGAGAGTGGTTGCTTAAATTATGAGGAAGCAAGAGCATTGCTAGGAAGATATGAATATCAAAAAGGAAATATTGAAGCTGCTCTTCATGTATTTGAAGGAATAGACATCACTGCTATAACTAGTAAGATAATGATCTCCATAGCTAGAAGAGGAGAACGTCCACAGAGACGATCACAAAATTTTACTGCCCCGCCAATGTCTATGCATGCTGTCAGTTTACTCTTGGAAGCCATCCTTCTGAAAGCAAAATCATTGCAAGGCCTTGGAAGGTTCGGAGAAGCTGCTCAATCTTGCAAAGTTATTCTGGACATACTTGAATCTTCATTTCCCGAAGGCTTGCCTGAAAACTTTGGTGCTGATTGTAAATTGCAGGAGACAGTTACAAAGGCCGTGGAGCTGCTACCAGAGTTATGGAAGCTAGCTGATGCTTCTCAAGAAGCGATCCTTTCATACCGGCGAGCACTTCTTCATCAGTGGAACCTTGATGCAGGAACCACTGCTCGGATCCAGAAAGAGTTTGCCATTTTTCTTCTGTACAGTGGATGTGAAGCTTGCCCTCCGAATCTCCGGTCCCAAATGGATAGCTCATTTGTACCAAAAAACAATATTGAAGAAGCTATACTCTTATTTATGATACTACTTAGAAAAGTTGTTCTTAAGAGGATTGATTGGGATCCATCAATCTTGGATCATCTCTCCTTTGCTCTAACAATATCAGGGGATACAAGGGCTTTAGCAGGTCAAATAGAGGAATTGCCTCCTGGGATTCTACATCGACAAGAAAGGTATCATGCTCTAGCTCTGTGTTACTATGGAGCGGGTGAAAACTTGACTGCTTTGAATCTGTTGAGGAAAGTGTTGGGTAATCATGAGGATCCTAAATCGCTTCCCGCTTTATTGATGGCGTCAAAGATTTGTGGAGAGAACTGCGACCTTGCTGAAGAGGGAACAAGTTTTGCTCATAGAGCTCTTCAAAACTTGGATCATGGATGTGATCAATTGGAAGGTGTTGCCAATTGTTTGTTGGGTGTCTCACTGTCTGTATATTCTAAATCTGCCACTGCAGATTCCGAGAAGTCCACCAGACAATCTGAGGCAATTGAGGCCTTGGAAGCCGCACGGAAGACGACTAGAACAGCTGACCCTAATGTCCTCTATCATTTGAGTCTTGAATATGCTGACGAGAGGAAGTTAGATTCAGCACTTTATTATGCAAAGAAGTGTCTCAAGCTGGAAGGTGGATGTAATGTTAAAACTTGGTTACTACTGGCTAGAATTCTCTCAGCCCAAAAACGATTTACAGATAGCGAAAGTATTATAAATGCAGCTCTAGATCAGACAGGGAAATGGGAGCAAGCCGAGTTGCTTCAAACGAAAGCAAAGCTTCTAATTGCACAGGATGAGTTTAAAGGTGCTATTGAGACTTATAGTCAATTACTCGCTGTTTTTCAAGTTCAGAGTAAAAATTTCAGTTTGGGAGATAAGAAGCTACATAAGAGCAGCAGAAATCATGCTAGAAGATTGCAATTGGAAGTGTGGCATGATCTAGCTATAGTCTACATAAGGCTCTCACAATGGCACGACGCCGAGGCCTGCCTTTCAAAGTCAAAGGCCATCTCTTCTCATTCGGCACCCACTTGCCATATTACAGGTATGCTTTATGAAGCAAAAGGCTTGTATAAAGAAGCTCTGAAAGCTTTTATGGCTGCTCTGGACATTGATCCGGTTCATGTCCCGAGCTTGGTCTCATCTGTGGTGGTTATCAGACATCTCGGCCACCAATCACATCCCGTCATTCGCAGCTTTTTGATGGATGCTCTACGGCTCGATCAAACAAACCATGCTGCGTGGTACAATCTTGGGCTATTCTACAAGTCTGAAGGAACCAAGTCTTCATTAGCAGAAGCTGTTGAATGTTTTGAGGCTGCAACTTTTCTTGAAGAGTCTGCTCCTGTTGAACCCTTTAGATAA 2205 43.04 MKSDAKIKRGRSAGKRENIRKIMKCLCSGEKTAGDDMIPAAESPSAFENSGSGRSSRTGEIVKKPEIGNIEEAESSLRESGCLNYEEARALLGRYEYQKGNIEAALHVFEGIDITAITSKIMISIARRGERPQRRSQNFTAPPMSMHAVSLLLEAILLKAKSLQGLGRFGEAAQSCKVILDILESSFPEGLPENFGADCKLQETVTKAVELLPELWKLADASQEAILSYRRALLHQWNLDAGTTARIQKEFAIFLLYSGCEACPPNLRSQMDSSFVPKNNIEEAILLFMILLRKVVLKRIDWDPSILDHLSFALTISGDTRALAGQIEELPPGILHRQERYHALALCYYGAGENLTALNLLRKVLGNHEDPKSLPALLMASKICGENCDLAEEGTSFAHRALQNLDHGCDQLEGVANCLLGVSLSVYSKSATADSEKSTRQSEAIEALEAARKTTRTADPNVLYHLSLEYADERKLDSALYYAKKCLKLEGGCNVKTWLLLARILSAQKRFTDSESIINAALDQTGKWEQAELLQTKAKLLIAQDEFKGAIETYSQLLAVFQVQSKNFSLGDKKLHKSSRNHARRLQLEVWHDLAIVYIRLSQWHDAEACLSKSKAISSHSAPTCHITGMLYEAKGLYKEALKAFMAALDIDPVHVPSLVSSVVVIRHLGHQSHPVIRSFLMDALRLDQTNHAAWYNLGLFYKSEGTKSSLAEAVECFEAATFLEESAPVEPFR 734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1313533 1317252 + CcPI632755_07g001220.1 Cco07g0122 182775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0122 734 SUPERFAMILY TPR-like 442 659 IPR011990 GO:0005515(InterPro)
Cco07g0122 734 Gene3D Tetratricopeptide repeat domain 528 659 IPR011990 GO:0005515(InterPro)
Cco07g0122 734 ProSiteProfiles TPR repeat profile. 622 655 IPR019734 GO:0005515(InterPro)
Cco07g0122 734 PANTHER PROTEIN NPG1 14 734 IPR043376 -
Cco07g0122 734 MobiDBLite consensus disorder prediction 37 62 - -
Cco07g0122 734 Gene3D Tetratricopeptide repeat domain 334 527 IPR011990 GO:0005515(InterPro)
Cco07g0122 734 Pfam Tetratricopeptide repeat 624 654 IPR019734 GO:0005515(InterPro)
Cco07g0122 734 SMART tpr_5 622 655 IPR019734 GO:0005515(InterPro)
Cco07g0122 734 SMART tpr_5 338 371 IPR019734 GO:0005515(InterPro)
Cco07g0122 734 SMART tpr_5 531 564 IPR019734 GO:0005515(InterPro)
Cco07g0122 734 SMART tpr_5 460 493 IPR019734 GO:0005515(InterPro)
Cco07g0122 734 SMART tpr_5 692 728 IPR019734 GO:0005515(InterPro)
Cco07g0122 734 SMART tpr_5 153 186 IPR019734 GO:0005515(InterPro)
Cco07g0122 734 SMART tpr_5 495 528 IPR019734 GO:0005515(InterPro)
Cco07g0122 734 SMART tpr_5 588 621 IPR019734 GO:0005515(InterPro)
Cco07g0122 734 Pfam Tetratricopeptide repeat 472 537 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1835 Cco-Chr8:29361028 Cco07g0122 Cco-Chr7:1313533 1.00E-158 transposed
Cco11g1516 Cco-Chr11:28037855 Cco07g0122 Cco-Chr7:1313533 1.80E-21 transposed
Cco11g1713 Cco-Chr11:29955511 Cco07g0122 Cco-Chr7:1313533 1.00E-170 transposed
Cco05g0473 Cco-Chr5:3794249 Cco07g0122 Cco-Chr7:1313533 7.30E-243 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0122 K21843 - csv:101223229 1330.47