Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0137 ATGGCGAAAAAGAGGATGAAGTCGATAACCCATATTTTGTTTTGTGCGTTTTTGTACTGTTGTATTGGTTTTTACACTGAGTGTTCTGCTTCTGGGTTTAGTGAAGAAGCATTGGCATTGGTTTCGATTAAATCAGGGCTTGTTGATCCATTAAAATGGCTCAGAGATTGGAAGTTGAGCGATGGAAATGGTGAGTTTGCAAAGCACTGTAATTGGACTGGAGTTTTTTGCAACTCAGATGGAGCTGTTGAGAAACTGAGCCTTTCTCGTATGAATCTCAGCGGCATTTTGTCGAACGACTTGCAAAGATTGACAAAGCTTACTTCTCTTGACTTGAGCGGCAATGGATTTTCGTCTTCTTTGCCAAAATCCATTGGCAATCTCACTTCCCTGAAGAGTTTTGATGTGAGTCAAAACTATTTCGTCGGTGAAATTCCGATGGGGTTTGGAGGGATGGTTGGATTGACGAATTTCAATGCCTCAAGCAACAATTTCTCTGGTTTTATCCCTGAGGATCTCGGAAATGCAACTCTGCTGGAGATTTTGGATCTCCGGGGGAGTTTTCTTGAAGGGTCAATTCCCATATCTTTCAAGAACTTGCAGAAGTTGAAGTTTCTTGGACTTTCTGGGAACAATCTGACCGGTCGAATCCCGACCGAGATTGGTCAGATGTCGTCGTTAGAGACTGTTATTATTGGATACAACGAGTTTGAAGGAGGGATTCCATCAGAATTTGGGAATCTCACTAATCTGAAGTATCTTGATTTGGCTGTGGGAAAACTTGGTGGTGGGATTCCTGCTGAGCTTGGGAGGCTTAAACAACTTGAGACGTTGTTCCTTTATAAGAACGAATTCGAAGATCGAATTCCGTCGTCGATTGGCAATGTTACTTCATTAGTGTTTCTTGATCTTTCAGACAACAAGTTAACAGGGGAGATTCCAGCTGAGGTAGCTGAACTGAAGAACTTGCAGCTGCTGAATTTGATGTGTAACAAGCTGTCTGGTGAAGTGCCTCCAGGAATAGGGGGGCTGACGAAATTGCAGGTTCTAGAGCTCTGGAACAACTCTTTGTCGGGCCAATTGCCTGGCGATCTTGGCAAGAACTCAGAGTTGGTATGGTTGGATGTCTCATCCAATTCATTCTCTGGTCCAATTCCTGCTTCTTTATGTAATAGAGGCAATCTAACCAAGCTCATCCTTTTCAACAATGCCTTTTCGGGTTCGATTCCGATTGGATTGTCATCATGTTACTCGCTCGTTCGTGTTCGAATGCAGAATAATCTCCTTTCTGGTACAATTCCAGTTGGTTTTGGAAAGCTTGGGAAGCTTCAGAGGCTAGAATTAGCAAACAACAGTCTCTTTGGTAGTATACCAAGTGATATTTCGTCTTCTAAGTCCCTTTCTTTTATTGATCTCTCTGAAAATGACCTCCATTCTTCTCTTCCTTCCTCAATTCTTTCCATTCCAAATCTTCAAACTTTTATAGTCTCTGACAATAACTTAGAAGGTGAAATCCCAGATCAGTTTCAGGAATGTCCTGCACTTTCCCTTCTTGATCTCTCTTCAAACCATTTCACAGGAAGCATTCCAGAAAGCATTGCTTCATGTGAGAGATTGGTAAATCTGAATCTTAGAAACAACCAGTTTACTGGAGAAATCCCAAAACAGATTGCAAATATGCCTTCATTGTCTGTCCTGGATCTATCCAACAACTCTCTTACTGGTAGAATACCTGATAATTTCGGTATCTCTCCGGCACTTGAATCTCTTAATGTATCATACAATAAGCTTGAGGGTCCAGTGCCATTAAATGGTGTTTTAAGAACAATCAATCCAAGTGATCTTCAGGGCAATGCTGGTTTATGTGGAGCAGTCCTACCCCCATGTTCACCAAATTCAGCATTTACATCAGGGCACGGGAACTCGCACACGTCACACATTATCGCTAGTTGGGTCATTGGAGTATCTGGATTTTTAGCAATCTGTATCACTCTTTTCGGTGTTCGATCGTTGTACAAGAGGTGGTACTCAAGCGGAAGTTGCTTTGAAGGGAGATACGAAATGGGTGGGGGAGATTGGCCATGGAGATTGATGGCATTCCAAAGGCTTGGATTCACAAGCAGTGACATTTTGACTTGCATCAAGGAATCAAATGTAATTGGAATGGGAGCAACTGGGATTGTGTATAAAGCTGAAATGCCACAACTAAAGACAGTTGTGGCAGTCAAAAAGCTGTGGAGATCACAACCAGATCTTGAAATTGGAAGTAGTGAAGGTCTAGTAGGAGAAGTGAATTTGCTGGGAAAGTTAAGGCACAGGAACATAGTTCGTTTACTCGGATTTATGCATAACGATGTCGATGTAATGATCATCTATGAGTTTATGCAAAATGGGAGCCTTGGAGAAGCCTTACATGGCAAACAAGCAGGGAGGATGCTTGTAGACTGGGTTTCAAGATACAACATAGCAATTGGAGTTGCACAAGGGTTAGCTTATCTCCATCACGATTGCAACCCACCCATCATTCATCGCGACGTTAAGCCAAATAATATACTTCTCGATTCAAATCTCGAGGCACGGTTAGCTGATTTTGGTTTGGCACGGATGATGGCTCGAAAGAACGAGACGGTTTCAATGGTAGCTGGATCCTACGGCTACATTGCCCCCGAATATGGATACACTTTAAAGGTGGATGAAAAGATTGACATTTACAGCTATGGCGTCGTTCTTTTAGAGCTACTGACAGGGAAGAAGCCATTAGATCCCGAGTTCGGGGAATCTGTGGACATTGTTGAATGGATAAAAAGGAAAGTTAGGGACAATAGGCCTTTAGAAGAAGCATTAGATCCCCATCTGGGAAATTTCAAGCATGTTCAAGAAGAAATGCTGTTTGTTCTTAGAATAGCACTTCTCTGCACTGCAAAGCATCCAAAAGACAGACCCTCCATGAGAGATATAATAACAATGCTTGGAGAAGCAAAACCAAGGAGAAAAAGCAACAGTGGCAATGAAGGATTCGGAACTAACAAAGAGAAGCCAGTTTTCAGCACTTCACCTGTAAATGGCCTTCTGTAG 3075 42.37 MAKKRMKSITHILFCAFLYCCIGFYTECSASGFSEEALALVSIKSGLVDPLKWLRDWKLSDGNGEFAKHCNWTGVFCNSDGAVEKLSLSRMNLSGILSNDLQRLTKLTSLDLSGNGFSSSLPKSIGNLTSLKSFDVSQNYFVGEIPMGFGGMVGLTNFNASSNNFSGFIPEDLGNATLLEILDLRGSFLEGSIPISFKNLQKLKFLGLSGNNLTGRIPTEIGQMSSLETVIIGYNEFEGGIPSEFGNLTNLKYLDLAVGKLGGGIPAELGRLKQLETLFLYKNEFEDRIPSSIGNVTSLVFLDLSDNKLTGEIPAEVAELKNLQLLNLMCNKLSGEVPPGIGGLTKLQVLELWNNSLSGQLPGDLGKNSELVWLDVSSNSFSGPIPASLCNRGNLTKLILFNNAFSGSIPIGLSSCYSLVRVRMQNNLLSGTIPVGFGKLGKLQRLELANNSLFGSIPSDISSSKSLSFIDLSENDLHSSLPSSILSIPNLQTFIVSDNNLEGEIPDQFQECPALSLLDLSSNHFTGSIPESIASCERLVNLNLRNNQFTGEIPKQIANMPSLSVLDLSNNSLTGRIPDNFGISPALESLNVSYNKLEGPVPLNGVLRTINPSDLQGNAGLCGAVLPPCSPNSAFTSGHGNSHTSHIIASWVIGVSGFLAICITLFGVRSLYKRWYSSGSCFEGRYEMGGGDWPWRLMAFQRLGFTSSDILTCIKESNVIGMGATGIVYKAEMPQLKTVVAVKKLWRSQPDLEIGSSEGLVGEVNLLGKLRHRNIVRLLGFMHNDVDVMIIYEFMQNGSLGEALHGKQAGRMLVDWVSRYNIAIGVAQGLAYLHHDCNPPIIHRDVKPNNILLDSNLEARLADFGLARMMARKNETVSMVAGSYGYIAPEYGYTLKVDEKIDIYSYGVVLLELLTGKKPLDPEFGESVDIVEWIKRKVRDNRPLEEALDPHLGNFKHVQEEMLFVLRIALLCTAKHPKDRPSMRDIITMLGEAKPRRKSNSGNEGFGTNKEKPVFSTSPVNGLL 1024
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1429822 1432978 - CcPI632755_07g001370.1 Cco07g0137 182790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0137 1024 Pfam Leucine rich repeat N-terminal domain 35 78 IPR013210 -
Cco07g0137 1024 MobiDBLite consensus disorder prediction 991 1024 - -
Cco07g0137 1024 SMART serkin_6 714 990 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g0137 1024 FunFam Leucine-rich repeat receptor protein kinase EMS1 289 371 - -
Cco07g0137 1024 Gene3D Transferase(Phosphotransferase) domain 1 799 1004 - -
Cco07g0137 1024 Pfam Leucine rich repeat 538 597 IPR001611 GO:0005515(InterPro)
Cco07g0137 1024 ProSitePatterns Protein kinases ATP-binding region signature. 720 744 IPR017441 GO:0005524(InterPro)
Cco07g0137 1024 Pfam Protein kinase domain 716 987 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g0137 1024 FunFam MDIS1-interacting receptor like kinase 1 714 798 - -
Cco07g0137 1024 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 372 633 - -
Cco07g0137 1024 ProSitePatterns Serine/Threonine protein kinases active-site signature. 841 853 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco07g0137 1024 Gene3D Ribonuclease Inhibitor 154 263 IPR032675 -
Cco07g0137 1024 SUPERFAMILY Protein kinase-like (PK-like) 711 990 IPR011009 -
Cco07g0137 1024 MobiDBLite consensus disorder prediction 1001 1024 - -
Cco07g0137 1024 SUPERFAMILY RNI-like 85 391 - -
Cco07g0137 1024 Pfam Leucine Rich Repeat 515 536 IPR001611 GO:0005515(InterPro)
Cco07g0137 1024 Pfam Leucine Rich Repeat 155 175 IPR001611 GO:0005515(InterPro)
Cco07g0137 1024 Pfam Leucine Rich Repeat 106 128 IPR001611 GO:0005515(InterPro)
Cco07g0137 1024 Pfam Leucine Rich Repeat 298 318 IPR001611 GO:0005515(InterPro)
Cco07g0137 1024 Pfam Leucine Rich Repeat 202 224 IPR001611 GO:0005515(InterPro)
Cco07g0137 1024 Pfam Leucine Rich Repeat 322 344 IPR001611 GO:0005515(InterPro)
Cco07g0137 1024 Pfam Leucine Rich Repeat 346 367 IPR001611 GO:0005515(InterPro)
Cco07g0137 1024 Pfam Leucine Rich Repeat 490 512 IPR001611 GO:0005515(InterPro)
Cco07g0137 1024 Pfam Leucine Rich Repeat 442 463 IPR001611 GO:0005515(InterPro)
Cco07g0137 1024 Pfam Leucine Rich Repeat 371 391 IPR001611 GO:0005515(InterPro)
Cco07g0137 1024 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 27 993 IPR050647 -
Cco07g0137 1024 SMART LRR_typ_2 296 320 IPR003591 -
Cco07g0137 1024 SMART LRR_typ_2 344 368 IPR003591 -
Cco07g0137 1024 SMART LRR_typ_2 560 584 IPR003591 -
Cco07g0137 1024 SMART LRR_typ_2 104 128 IPR003591 -
Cco07g0137 1024 SMART LRR_typ_2 440 464 IPR003591 -
Cco07g0137 1024 SMART LRR_typ_2 272 295 IPR003591 -
Cco07g0137 1024 SMART LRR_typ_2 200 224 IPR003591 -
Cco07g0137 1024 Gene3D Ribonuclease Inhibitor 35 153 IPR032675 -
Cco07g0137 1024 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 33 187 - -
Cco07g0137 1024 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 188 288 - -
Cco07g0137 1024 Gene3D Phosphorylase Kinase; domain 1 713 798 - -
Cco07g0137 1024 Gene3D Ribonuclease Inhibitor 374 633 IPR032675 -
Cco07g0137 1024 Gene3D Ribonuclease Inhibitor 264 364 IPR032675 -
Cco07g0137 1024 FunFam MDIS1-interacting receptor like kinase 1 799 1008 - -
Cco07g0137 1024 PRINTS Leucine-rich repeat signature 299 312 - -
Cco07g0137 1024 PRINTS Leucine-rich repeat signature 560 573 - -
Cco07g0137 1024 ProSiteProfiles Protein kinase domain profile. 714 997 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g0137 1024 SUPERFAMILY RNI-like 289 599 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0126 Cco-Chr4:2882815 Cco07g0137 Cco-Chr7:1429822 1.90E-28 dispersed
Cco06g1954 Cco-Chr6:29734261 Cco07g0137 Cco-Chr7:1429822 8.60E-55 dispersed
Cco07g0137 Cco-Chr7:1429822 Cco07g1757 Cco-Chr7:31718764 3.10E-101 dispersed
Cco07g0137 Cco-Chr7:1429822 Cco06g0823 Cco-Chr6:9893654 6.00E-81 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86953 PF00069 Pkinase 4.00E-47 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0137 - - - 0.0