Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0145 ATGGCAGAAATGGCCTGCTCCGCCGCTGACCTTCACCACCTCCTCGGCGGCTCAGCCAACGCCACTGCCGTCGCGGAGTACATTTGCAGCCGATTCGATTCCGTGTCGACGAAATTTGTCGACACAAGCTATGCGGTTGACAACACATACCTTCTGTTTTCAGCTTACCTTGTATTTGCAATGCAGCTTGGATTTGCAATGCTTTGTGCTGGGTCAGTTAGAGCCAAAAACACAATGAATATTATGTTAACTAATGTTCTTGATGCAGCTACTGGTGGAATATTTTATTATGTATTTGGGTTTGCTTTGGCATTTGGAACACCTTCAAATTCCTTCATTGGACACCATTATTTTGGACTCTCACAGTTTCCTTCTTCTTCATTTGATTATGGGTTCTTTCTTTTTCAATGGGCCTTTGCAATTGCTGCTGCTGGGATTACAAGTGGATCCATTGCTGAAAGAACTCAGTTTGTTGCCTATTTGATCTATTCCTCTGTTTTGACTGGTTTGGTATATCCAATCGTTTCTCATTGGTTTTGGTCGTCCGATGGGTGGGGAAGTGCCGCTCGGTCCGATAACCTCCTATTTGGGTCCGGCGTGATCGACTTCGCCGGCTCCGGCGTCGTCCACATGGTCGGCGGCATCGCCGGTTTATGGGGCGCCCTCATAGAAGGCCCTCGAATCGGCCGATTCGATCACGCCGGCCGCTCCGTCGCCCTCCGTGGCCACAGCGGCACATTGGTTGTTCTCGGCACTTTCCTCCTCTGGTTCGGCTGGTACGGCTTCAACCCCGGTTCATTTCTCAACATCCTCAAAGCCTACGGCCACCCCGCCGCCCCCTATTACGGCCAATGGAGCGCCATCGGCCGCACCGCCGTCACCACTACCCTGGCCGGCTGCACAGCAGCACTAACCACACTCTTCGGCAAACGCCTCCTCGTCGGCCACTGGAATGTCACCGATGTTTGCAACGGTTTATTAGGCGGATTCGCCGCCATAACCTCCGGTTGCGCGGTGGTGGATCCATGGGCAGCAATTGTGTGCGGGTTTGTCTCAGCCTGGGTTTTGATCGGATTCAACAAACTAGCGGAGAAAATGAAGTACGACGATCCACTAGAGGCGGCGCAATTGCACGGCGGTTGTGGAGCTTGGGGGATTTTGTTCACAGGGTTATTTGCAAAACAGGCTTATGTTAACGAGATTTATCCAGGGTTGCCGGAGAGGCCGTACGGGCTGTTGATGGGCGGCGGCGGGAGGTTGTTAGCGGCTCATTTAGTGCAAATTTTGTCGATTGTTGGTTGGGTTAGTGTGACAATGGGGCTTGTTTTTTGGTTGTTGCATAAGTTTAGGTTGCTGAGGATTACGCCGGAGGAGGAGATGGCCGGAATGGACTTGACGAGCCACGGCGGTTTGGCTTATGTGTATAATGATGAAGAGAAGCTTTAA 1446 51.8 MAEMACSAADLHHLLGGSANATAVAEYICSRFDSVSTKFVDTSYAVDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAATGGIFYYVFGFALAFGTPSNSFIGHHYFGLSQFPSSSFDYGFFLFQWAFAIAAAGITSGSIAERTQFVAYLIYSSVLTGLVYPIVSHWFWSSDGWGSAARSDNLLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDHAGRSVALRGHSGTLVVLGTFLLWFGWYGFNPGSFLNILKAYGHPAAPYYGQWSAIGRTAVTTTLAGCTAALTTLFGKRLLVGHWNVTDVCNGLLGGFAAITSGCAVVDPWAAIVCGFVSAWVLIGFNKLAEKMKYDDPLEAAQLHGGCGAWGILFTGLFAKQAYVNEIYPGLPERPYGLLMGGGGRLLAAHLVQILSIVGWVSVTMGLVFWLLHKFRLLRITPEEEMAGMDLTSHGGLAYVYNDEEKL 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1488972 1491417 + CcPI632755_07g001450.1 Cco07g0145 182798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0145 481 Pfam Ammonium Transporter Family 50 473 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cco07g0145 481 PANTHER AMMONIUM TRANSPORTER 24 476 - GO:0005887(PANTHER)|GO:0008519(PANTHER)|GO:0072488(PANTHER)|GO:0097272(PANTHER)
Cco07g0145 481 FunFam Ammonium transporter 28 481 - -
Cco07g0145 481 NCBIfam ammonium transporter 47 473 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cco07g0145 481 Gene3D Ammonium transporter AmtB like domains 26 481 IPR029020 -
Cco07g0145 481 ProSitePatterns Ammonium transporters signature. 202 227 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cco07g0145 481 SUPERFAMILY Ammonium transporter 44 454 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0145 Cco-Chr7:1488972 Cco11g1034 Cco-Chr11:19287421 4.70E-209 dispersed
Cco05g0437 Cco-Chr5:3576277 Cco07g0145 Cco-Chr7:1488972 5.10E-201 wgd
Cco06g0789 Cco-Chr6:9122317 Cco07g0145 Cco-Chr7:1488972 1.40E-203 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0145 K03320 - csv:101223077 911.368