Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0149 ATGCCTTTCTCGACTTTTCACCTTCTTTTGGTTCTTCATGCGTTCGATTTGCTTTTCTCTTGCTCAGGACAATCTTCAGTTTCACCACACATATACTTATCTCCTTCCTTACAGCCAAACCTGCAAACAATGACCACGGAAATGTCAACAGAGCATGCGAGGTTGGAGTCGATAAGTTTTTCATTTGTGCCTTCAAAGTTACGTGGTAACTGGATATTTAAGTCTTCTTTGGGACCATCTACTGCTCCTGCACCCTCTCCAGGTCCTAGGAGTGCACCCTTACCCATCCGACATCATCGACGGCGTCGTGGACGACCTCATGTGGTTGCTCCTACCCCATCAAAAGACCAAGGTTGTGATCAAATATGCATGGAGCCCCTTACTGCAGCTCCCTTTGGTTCACCTTGTGGCTGTGTGTTTCCCATGAAAGTCAGACTTCTTCTGGATATAGCTCCATATGCTGTTTTCCCCGTGATGAACGAGCTTGAAAGTGAGATTGCAGTGGGGACTTACTTGGAGCAGAGCCAAGTGAAAATCATGGGTGCAACTGCAGACAGTCAAAATCAAGGAAGAACTATGGTGGACATAAATTTAGTACCTCTAGGAGAGAAGTTTGATAATACAACTGCAGTTCTGACATACAGAAGGTTTTGGGATAAAAAAGTGCATTTAAATATGACGCTTTTTGGTGATTATGAAGTTGTTTACATCAGCTATCCAGGGATTCCTTCTTCCCCGCCATATGGAGGGTACATGGGAAGTGCTCCTAGTGGAAGTGCGGGTGATCTTCCCATTACTGCAAATTTCGTTAATAAGAGCCAGAAGATGAATATCAAAACAATTGCCATCATAGCACTTTCAGCATTTGTTGTGTTATTAGTGTTCATTGGAGCTCTCTCCATCTTTTTTAAATGGAGAAAAGTTGGCAGACCATCTAGTGCTGTTGGCCCTGTCTTCACGTCATCAATTAACAAAAGATCTGGTCTAGGATCAGCCTTATCAAGTAGCATTGCAAGCTCCACCTCTGTTTCCCTAATTTCCACAATGCCAACCAGTCTTCAATCTGTTAAAACATTTGCACTTTCTGAACTTGAGAAAGCAACCGACAAGTTTAGTTCAAAAAGGATTTTAGGTGAAGGGGGATTTGGCCGAGTTTACTGTGGTATTTTGGAAGATGGAAATGAAGTTGCAGTTAAGTTGCTTACTCGGGACAATCAGAATAGAGACCGTGAATTTATTGCCGAAGTTGAGATGTTGAGTAGACTGCATCATCGGAATCTTGTGAAACTGATTGGGATATGCATTGAAGGGCGAACTCGCTGCTTAGTTTATGAGCTTGTCCATAATGGCAGTGTTGAGTCTCACTTGCATGGCATTGACAAGAGAAAAGGACCTCTTGACTGGGACGCACGATTAAAGATTGCTCTTGGAGCAGCAAGAGGTTTGGCATATCTTCATGAAGATTCTAATCCCCGCGTTATTCACCGTGATTTCAAGGCAAGTAATGTTCTGTTGGAAGTTGACTTCACCCCCAAGGTTTCGGATTTTGGATTGGCTAGGGAAGCAACTGAAGGAAGTGAACATATCTCAACACGGGTGATGGGGACTTTCGGGTATGTAGCCCCTGAATATGCAATGACTGGGCACCTGCTCGTCAAAAGTGATGTTTACAGTTATGGAGTCGTGCTACTTGAGCTTCTTTCGGGAAGAAAACCGGTGGACATGTCCCAACCACATGGTGAGGAGAACCTCGTAACGTGGGCGCGACCTCTATTGACCAGTAGAGAAGGTTTGGAGCAACTAGTGGATCCTTCTCTAGCTGGTACTTACGACTTCGATGACATGGCCAAGGTGGCTGCCATAGCTTCAATGTGCGTTCACCCAGAGGTGACCCAGAGGCCATTTATGGGAGAAGTTGTGCAGGCTCTAAAACTAATATACAACGACACAGACGAGACGTGTGCAGATTACTGCAGTCAAAAGGAGTCCTCTGCTCGGGACTCAGATTTCAAAGGCGACCTTGTCCCATCCGACAGCAGTTGGTGGAATGCCGGTGGCCTTACACCCCGACTGACATATGGTCAAGCCTCTTCCTTCATCACCATGGAATACAGCTCTGGCCCTCTTGAAGAGATGGAAAACCGCCCATTTTCAACTTCAAGTTTGGTAGGCGACGAGATATCTTTGCCCATTCGGCATGGAAACAGGTCAGGTCCGTTACGAACCGCTCGAAGCAAGCCTGCGTTCTATAGATTTTCAGGAAGTAGGAGTGAGCATGGAGGACTTCTTACAAGGCCTCCTTGGAACAGCAGTGGGTTTTGGGTTTGA 2328 45.58 MPFSTFHLLLVLHAFDLLFSCSGQSSVSPHIYLSPSLQPNLQTMTTEMSTEHARLESISFSFVPSKLRGNWIFKSSLGPSTAPAPSPGPRSAPLPIRHHRRRRGRPHVVAPTPSKDQGCDQICMEPLTAAPFGSPCGCVFPMKVRLLLDIAPYAVFPVMNELESEIAVGTYLEQSQVKIMGATADSQNQGRTMVDINLVPLGEKFDNTTAVLTYRRFWDKKVHLNMTLFGDYEVVYISYPGIPSSPPYGGYMGSAPSGSAGDLPITANFVNKSQKMNIKTIAIIALSAFVVLLVFIGALSIFFKWRKVGRPSSAVGPVFTSSINKRSGLGSALSSSIASSTSVSLISTMPTSLQSVKTFALSELEKATDKFSSKRILGEGGFGRVYCGILEDGNEVAVKLLTRDNQNRDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVHNGSVESHLHGIDKRKGPLDWDARLKIALGAARGLAYLHEDSNPRVIHRDFKASNVLLEVDFTPKVSDFGLAREATEGSEHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLSGRKPVDMSQPHGEENLVTWARPLLTSREGLEQLVDPSLAGTYDFDDMAKVAAIASMCVHPEVTQRPFMGEVVQALKLIYNDTDETCADYCSQKESSARDSDFKGDLVPSDSSWWNAGGLTPRLTYGQASSFITMEYSSGPLEEMENRPFSTSSLVGDEISLPIRHGNRSGPLRTARSKPAFYRFSGSRSEHGGLLTRPPWNSSGFWV 775
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1521741 1527359 + CcPI632755_07g001490.1 Cco07g0149 182802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0149 775 SUPERFAMILY Protein kinase-like (PK-like) 355 650 IPR011009 -
Cco07g0149 775 CDD STKc_IRAK 377 646 - -
Cco07g0149 775 PANTHER OS01G0750732 PROTEIN 121 668 IPR050885 -
Cco07g0149 775 ProSitePatterns Serine/Threonine protein kinases active-site signature. 493 505 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco07g0149 775 Pfam Protein tyrosine and serine/threonine kinase 374 642 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco07g0149 775 FunFam receptor-like serine/threonine-protein kinase ALE2 344 446 - -
Cco07g0149 775 MobiDBLite consensus disorder prediction 79 115 - -
Cco07g0149 775 MobiDBLite consensus disorder prediction 94 108 - -
Cco07g0149 775 ProSitePatterns Protein kinases ATP-binding region signature. 377 399 IPR017441 GO:0005524(InterPro)
Cco07g0149 775 Gene3D Transferase(Phosphotransferase) domain 1 447 670 - -
Cco07g0149 775 ProSiteProfiles Protein kinase domain profile. 371 646 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g0149 775 FunFam Receptor-like serine/threonine-protein kinase ALE2 447 664 - -
Cco07g0149 775 Gene3D Phosphorylase Kinase; domain 1 343 446 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1609 Cco-Chr3:30760811 Cco07g0149 Cco-Chr7:1521741 1.70E-177 dispersed
Cco07g0149 Cco-Chr7:1521741 Cco09g0061 Cco-Chr9:532185 3.40E-169 dispersed
Cco09g0308 Cco-Chr9:2686711 Cco07g0149 Cco-Chr7:1521741 5.00E-70 dispersed
Cco06g0823 Cco-Chr6:9893654 Cco07g0149 Cco-Chr7:1521741 6.80E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86954 PF07714 PK_Tyr_Ser-Thr 2.20E-46 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0149 - - - 0.0