Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0166 ATGGCGGTGTCTCTTACACTACAGTTTTCCACCGCTTCTTCTATCCCTTTCCTTCTTCTTCTCATCATCTTCTTCGTTCAGTCCAGTTTTGCTCGAGATGAGAGATTGCAGAGCTTCAATTCTTCGTCAATGGCGGACCGGTATATTAAGAATGAGCATGCTGTTGATAATCCAGAGGAAATTGCATCAATGGTTGATTCGAGCATTCGGAATATCACAGAGAGGAGGAATTTGGGGTTCTTCTCTTGTGGAACAGGAAATCCAATTGATGATTGTTGGCGTTGTGACCCACGTTGGCAATTGCGGCGAAAGCATCTGGCCAACTGTGGCATTGGGTTTGGACGTAATGCGGTTGGTGGCCGTGATGGGCGATACTACGTCGTCTCCAATCCTGGTGACGACGATCCTGTCAATCCCCGACCAGGGACCCTTCGTCATGCTGTGATTCAAGACAGGCCATTGTGGATTGTGTTCAAAAGAGATATGGTTATCACTCTAAAGCAAGAACTCATCATGAACAGCTTCAAGACAATTGATGGGCGTGGTGCTAATGTCCATATTGCTTATGGAGCTTGTATTACAATCCAATTCATAACCAATGTTATTATTCATGGTTTGCATATTCACGACTGCAAGCGGACGGGAAATGCCATGGTTCGAAGCTCGCCAAGTCATTATGGATGGAGGACAATGGCTGATGGTGATGGTATTTCTATTTTTGGGTCAAGTCATATTTGGATTGACCATAATTCTCTTTCTAGCTGTTCTGATGGACTCATTGATGCTATCATGGGATCAACTGCCATCACTATTTCTAACAACTACTTCACCCACCACAATGAGGTGATGCTCTTGGGTCATAGTGACTCTTATGTTAGAGACAAGCAAATGCAAGTCACCATTGCTTATAACCATTTTGGTGAAGGTCTTATCCAAAGAATGCCAAGGTGTAGACATGGGTATTTCCATGTAGTAAACAATGACTACACTCACTGGGAAATGTATGCCATCGGTGGAAGTGCTGATCCCACCATTAATAGCCAGGGCAACAGATATCTTGCCCCTGCCAATCCTTTTGCCAAAGAGGTCACAAAGAGAGTTGAAACAAATAACGGTGTATGGAGGCACTGGAATTGGAGATCAGAAGGAGATCTTATGCTAAATGGAGCCTATTTCACTCCATCAGGAGCTGGTGCAGCATCCAGTTATGCAAGAGCCTCAAGCTTAGGAGCTAAATCCTCTTCCTTGGTGGGCACCATTACTTCAAATGCAGGCGCCCTTTCTTGTCGTAGGGGATTCCGTTGTTAA 1308 44.72 MAVSLTLQFSTASSIPFLLLLIIFFVQSSFARDERLQSFNSSSMADRYIKNEHAVDNPEEIASMVDSSIRNITERRNLGFFSCGTGNPIDDCWRCDPRWQLRRKHLANCGIGFGRNAVGGRDGRYYVVSNPGDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGANVHIAYGACITIQFITNVIIHGLHIHDCKRTGNAMVRSSPSHYGWRTMADGDGISIFGSSHIWIDHNSLSSCSDGLIDAIMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRYLAPANPFAKEVTKRVETNNGVWRHWNWRSEGDLMLNGAYFTPSGAGAASSYARASSLGAKSSSLVGTITSNAGALSCRRGFRC 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1788127 1793813 - CcPI632755_07g001660.1 Cco07g0166 182819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0166 435 SUPERFAMILY Pectin lyase-like 69 430 IPR011050 -
Cco07g0166 435 PRINTS Pollen allergen Amb family signature 109 126 IPR018082 -
Cco07g0166 435 PRINTS Pollen allergen Amb family signature 169 185 IPR018082 -
Cco07g0166 435 PRINTS Pollen allergen Amb family signature 233 254 IPR018082 -
Cco07g0166 435 PRINTS Pollen allergen Amb family signature 313 332 IPR018082 -
Cco07g0166 435 PRINTS Pollen allergen Amb family signature 377 401 IPR018082 -
Cco07g0166 435 PRINTS Pollen allergen Amb family signature 335 354 IPR018082 -
Cco07g0166 435 PRINTS Pollen allergen Amb family signature 133 158 IPR018082 -
Cco07g0166 435 PRINTS Pollen allergen Amb family signature 406 429 IPR018082 -
Cco07g0166 435 PANTHER PECTATE LYASE 18-RELATED 26 432 IPR045032 GO:0030570(InterPro)
Cco07g0166 435 Pfam Pectate lyase 169 350 IPR002022 -
Cco07g0166 435 Gene3D - 86 428 IPR012334 -
Cco07g0166 435 FunFam Pectate lyase 86 428 - -
Cco07g0166 435 SMART amb_all 161 358 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0166 Cco-Chr7:1788127 Cco09g2155 Cco-Chr9:35942371 5.40E-172 dispersed
Cco05g0410 Cco-Chr5:3388023 Cco07g0166 Cco-Chr7:1788127 1.00E-203 wgd
Cco06g0822 Cco-Chr6:9849896 Cco07g0166 Cco-Chr7:1788127 8.10E-190 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0166 K01728 - csv:101207204 830.861