Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0190 ATGGGCGGCCGCACGTTGTTCACTTTGGCTGAGGTTGCCTCCCATGACAATCGCAACGACTGCTGGTTGATCATCGAAGACAAGGTGTATGATGTAACAAAATTCCTTGAAGACCATCCTGGTGGTGATGAAGTCTTGTTGGCAGGCGTTGGTAAGGATGCAACCAATGATTTTTTCGACGTCGGGCACAGTAGTGCTGCTAGAGCAATGATGGAAGAATTTTACGTAGGCGATATCGATAGCTCGACTATTCCTGTGAAAAGGAAGTACACTCCTCCAAAGCAGCCATTATACAACCAAGACAAGACACCAGAATTCATTATCAAGGTCCTCCAGTTTCTTGCTCCCCTGGTAATTTTGGGCTTGGCTTTTGGCATCCACCTCTATACCAAAACAACTTAA 402 46.02 MGGRTLFTLAEVASHDNRNDCWLIIEDKVYDVTKFLEDHPGGDEVLLAGVGKDATNDFFDVGHSSAARAMMEEFYVGDIDSSTIPVKRKYTPPKQPLYNQDKTPEFIIKVLQFLAPLVILGLAFGIHLYTKTT 133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2006895 2008898 - CcPI632755_07g001900.1 Cco07g0190 182843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0190 133 PRINTS Cytochrome B5 signature 54 61 IPR001199 -
Cco07g0190 133 PRINTS Cytochrome B5 signature 67 79 IPR001199 -
Cco07g0190 133 PRINTS Cytochrome B5 signature 29 39 IPR001199 -
Cco07g0190 133 PRINTS Cytochrome B5 signature 39 53 IPR001199 -
Cco07g0190 133 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 35 42 IPR018506 GO:0020037(InterPro)
Cco07g0190 133 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 4 80 IPR001199 -
Cco07g0190 133 PANTHER CYTOCHROME B5 6 126 IPR050668 GO:0005783(PANTHER)|GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Cco07g0190 133 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 5 91 IPR036400 -
Cco07g0190 133 FunFam Cytochrome b5 type B 2 84 - -
Cco07g0190 133 SMART Cyt_b5_2 7 80 IPR001199 -
Cco07g0190 133 Gene3D - 3 85 IPR036400 -
Cco07g0190 133 Pfam Cytochrome b5-like Heme/Steroid binding domain 8 79 IPR001199 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0190 Cco-Chr7:2006895 Cco08g1201 Cco-Chr8:23729642 3.70E-23 dispersed
Cco11g0236 Cco-Chr11:2268786 Cco07g0190 Cco-Chr7:2006895 1.10E-15 transposed
Cco05g0387 Cco-Chr5:3164184 Cco07g0190 Cco-Chr7:2006895 4.70E-50 wgd
Cco06g0811 Cco-Chr6:9552183 Cco07g0190 Cco-Chr7:2006895 4.00E-49 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0190 K23490 - csv:101212882 260.766