Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco07g0210 | ATGGGGCCGGGAGTGCCCTTATCTGGTGCTGCAAAACAGGCCGAGCTTCTCAGAAAAGATGGCAACCACTATTTTCAAAAGGGTCGAATTGGAGCTGCCATTGAAGCTTATACTGAGGCGATTACACTATGCCCGAATGTTCCTGTTTATTTGACGAACCGTGCTTTGTGTCATCGCAAGCGGAATGATTGGAAGAAGGTGGAGGAGGACTGTCGGAGAGCTATTCAGCTTGATAGCAGTTCTGTCAAGGCACATTACATGTTAGGATTAGCATTAATACAAAATAAAGAATATCCGGAAGGAATCAAGCATTTGGAGAAGGCTTTGGATCTTGGTAGGGGTGCAAACCCAAAGAGTTATATAGTAGAGGAGATATGGCAGGAACTCTCTAGAGCGAAATACAGGGAGTGGGAACAAGCCTCCACCGAACGTTCATGGGAATTACAGACATTGAAAGAAGCTTGTGAGGCTGCCCTTGAACAAAAATACTTTCTTGACCAATCTGAACTTGAAGGGTTCGTAGATGAAGCCGAAATTGCTCATCGGAAACAATTAAAATCATTAAGAACTGTGTTCGAAAAAGTTGCCGAGGCAGATGCGCCGTCTGAGGTGCCTGACTATCTCTGTTGTAAAATCACGCTCGATATTCTCCGCGATCCTGTTATTACTCCGAGCGGGGTTACTTATGAGAGAGCAGTGATTCTCGACCATTTTCGAAAGGTTGGTAACTTCGATCCCATAACACGGGAGCTGCTTGACGAGTCCCAGCTAGTACCAAACTTAGCCATCAAGGAAGCAGTACAATCATTTCTAGATAAGCATGGATGGGCTTATAATACAAATTAA | 846 | 44.56 | MGPGVPLSGAAKQAELLRKDGNHYFQKGRIGAAIEAYTEAITLCPNVPVYLTNRALCHRKRNDWKKVEEDCRRAIQLDSSSVKAHYMLGLALIQNKEYPEGIKHLEKALDLGRGANPKSYIVEEIWQELSRAKYREWEQASTERSWELQTLKEACEAALEQKYFLDQSELEGFVDEAEIAHRKQLKSLRTVFEKVAEADAPSEVPDYLCCKITLDILRDPVITPSGVTYERAVILDHFRKVGNFDPITRELLDESQLVPNLAIKEAVQSFLDKHGWAYNTN | 281 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 2135878 | 2143005 | + | CcPI632755_07g002100.1 | Cco07g0210 | 182863 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco07g0210 | 281 | Pfam | Anaphase-promoting complex, cyclosome, subunit 3 | 50 | 108 | - | - | |
| Cco07g0210 | 281 | CDD | RING-Ubox_CHIP | 204 | 274 | IPR045202 | - | |
| Cco07g0210 | 281 | SMART | Ubox_2 | 207 | 270 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
| Cco07g0210 | 281 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 202 | 280 | IPR013083 | - | |
| Cco07g0210 | 281 | SUPERFAMILY | RING/U-box | 199 | 278 | - | - | |
| Cco07g0210 | 281 | Pfam | Tetratricopeptide repeat | 24 | 46 | IPR019734 | GO:0005515(InterPro) | |
| Cco07g0210 | 281 | Gene3D | Tetratricopeptide repeat domain | 8 | 144 | IPR011990 | GO:0005515(InterPro) | |
| Cco07g0210 | 281 | ProSiteProfiles | TPR repeat profile. | 82 | 115 | IPR019734 | GO:0005515(InterPro) | |
| Cco07g0210 | 281 | ProSiteProfiles | TPR repeat profile. | 14 | 47 | IPR019734 | GO:0005515(InterPro) | |
| Cco07g0210 | 281 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE CHIP | 9 | 279 | - | GO:0000209(PANTHER)|GO:0005737(PANTHER)|GO:0006515(PANTHER)|GO:0043161(PANTHER)|GO:0045862(PANTHER)|GO:0051087(PANTHER)|GO:0061630(PANTHER)|GO:0071218(PANTHER) | |
| Cco07g0210 | 281 | SMART | tpr_5 | 82 | 115 | IPR019734 | GO:0005515(InterPro) | |
| Cco07g0210 | 281 | SMART | tpr_5 | 48 | 81 | IPR019734 | GO:0005515(InterPro) | |
| Cco07g0210 | 281 | SMART | tpr_5 | 14 | 47 | IPR019734 | GO:0005515(InterPro) | |
| Cco07g0210 | 281 | Pfam | U-box domain | 204 | 276 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
| Cco07g0210 | 281 | SUPERFAMILY | TPR-like | 12 | 133 | IPR011990 | GO:0005515(InterPro) | |
| Cco07g0210 | 281 | ProSiteProfiles | U-box domain profile. | 203 | 277 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco07g0210 | Cco-Chr7:2135878 | Cco10g1817 | Cco-Chr10:31793055 | 3.00E-06 | transposed | |
| Cco07g0210 | Cco-Chr7:2135878 | Cco05g0188 | Cco-Chr5:1475344 | 3.00E-06 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco07g0210 | K09561 | - | csv:101215457 | 547.354 |