Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0211 ATGGCCAAAACAGGCGTCTTTGATTCTGATCCTGCAGTTATGGGGAAAGCCACGGAGTTGAAGAGGGAGTTACACAGACTTATCGTTGCTATAATTGATGACGATAATTACTCCACCGACACCATTGATAACGCTAAAGAAATTCTTTCTGCGCTCAAGGAGTTGAAACTCAGGAAGAGATCGCGTTCTTCTTCTAATCTTTTCGAGAATCTCATTTGTCCTGAGGAATTTCGTTGTCCGCTCTCTAGAGAACTCATGAGAGATCCTGTCATTGTGTCTACTGGCGAGACATATGACAGACCCTTCATGCAGAAATGGTTAAAATCAGGGAACAGGACTTGCCCTAGAACTCAGCAAGTTCTTTCACACACCAACCTCACTCCCAATCACTTGATTCGTCAAATGATAGCTCAATGGTGTGCAACTCGGGGAATTGAGTTGCAAGATCGCATCCGTGTTCATTATCTTGATGACGATGTCATAACAGAGGCTGATCGAGACCGTTTTCTCACGTTAATAGAGAAAATGTCTATGACAATATCTGAACAGAAAGCAGCTGCAAAGGAGCTTCGAATGTTGACGAAGCGAATGCCCTCATTTCGAGCACTTTTTGGTGAGTCCCTTGATGCCATATCTTTGTTGCTTAGTCCACTTTGTGGAGATAAGTCACAAAGTATTAGTGTTCACACGGATCTGCAAGAAGATGTGATCACAACCCTCTTGAATTTGTCGATCCATGACAACAACAAGAAGCTTGTTGCCGAAACACCCAAGGTAATACCTCTTCTAATGGAAGCGTTGAGATCAGGAACCATGGAAACAAGGAGCAATGCAGCTGCAGCCCTGTTTACTCTGTCAGCTCTCGACTCAAACAAAGCAATCATTGGGAAAGCTGGTGCCTTGCAACCCCTTATCGACCTATTAGATGAGGGGCATCCTTTATCAATCAAAGATGCTGCTTCAGCAATATTCAATCTTTGTATAATTCATGAAAACAAAGCAAGAGCTGTGCGAGATGGTGCAGTCCGAGTGCTTTTGAAAAAGATCATGAACCAGATGCATGTTGATGAGTTGTTGGCTATTCTGGCTATGCTATCATGCCATCAAAAAGCTATCGAAGAAATTGGAGAACTTGGAGCTGTCCCTTACTTACTCAGAATTATCAGGGAAAGTTCTTGTTCGCGTAACAAGGAAAATTGCATCGTGATCATCCATGCTATCTGCTTAAACGATCGAACCAAGTGGAAGGATATGAGGGAGGAAGAGAAATGCTATCGAACTATATCTGAACTTGCTCAGAATGGAACTTCAAGGGCTAAGAGAAAGGCCAGTGGCATACTCGAAAGATTAAACAGGCTTGTAGATTCTGCGTCTAAATCCGGCACTCTCATCTTTGCTAAGACTCGGTCATCTGTTTGGAATTGTTCTACGGCAAAGCAACGAAAAAAGCTATTGAATTAA 1461 42.85 MAKTGVFDSDPAVMGKATELKRELHRLIVAIIDDDNYSTDTIDNAKEILSALKELKLRKRSRSSSNLFENLICPEEFRCPLSRELMRDPVIVSTGETYDRPFMQKWLKSGNRTCPRTQQVLSHTNLTPNHLIRQMIAQWCATRGIELQDRIRVHYLDDDVITEADRDRFLTLIEKMSMTISEQKAAAKELRMLTKRMPSFRALFGESLDAISLLLSPLCGDKSQSISVHTDLQEDVITTLLNLSIHDNNKKLVAETPKVIPLLMEALRSGTMETRSNAAAALFTLSALDSNKAIIGKAGALQPLIDLLDEGHPLSIKDAASAIFNLCIIHENKARAVRDGAVRVLLKKIMNQMHVDELLAILAMLSCHQKAIEEIGELGAVPYLLRIIRESSCSRNKENCIVIIHAICLNDRTKWKDMREEEKCYRTISELAQNGTSRAKRKASGILERLNRLVDSASKSGTLIFAKTRSSVWNCSTAKQRKKLLN 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2148288 2151571 - CcPI632755_07g002110.1 Cco07g0211 182864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0211 486 ProSiteProfiles U-box domain profile. 72 146 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco07g0211 486 SMART arm_5 288 328 IPR000225 GO:0005515(InterPro)
Cco07g0211 486 SMART arm_5 246 287 IPR000225 GO:0005515(InterPro)
Cco07g0211 486 SMART arm_5 368 409 IPR000225 GO:0005515(InterPro)
Cco07g0211 486 CDD RING-Ubox_PUB 74 126 IPR045210 -
Cco07g0211 486 SUPERFAMILY RING/U-box 73 149 - -
Cco07g0211 486 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 146 IPR013083 -
Cco07g0211 486 SUPERFAMILY ARM repeat 182 450 IPR016024 -
Cco07g0211 486 Gene3D - 169 475 IPR011989 -
Cco07g0211 486 Pfam Armadillo/beta-catenin-like repeat 291 327 IPR000225 GO:0005515(InterPro)
Cco07g0211 486 Pfam U-box domain 74 143 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco07g0211 486 SMART Ubox_2 76 139 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco07g0211 486 PANTHER U BOX DOMAIN-CONTAINING 40 452 - -
Cco07g0211 486 FunFam RING-type E3 ubiquitin transferase 159 456 - -
Cco07g0211 486 FunFam RING-type E3 ubiquitin transferase 72 146 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0211 Cco-Chr7:2148288 Cco11g0617 Cco-Chr11:6635883 1.10E-35 dispersed
Cco07g0211 Cco-Chr7:2148288 Cco02g2163 Cco-Chr2:34366997 4.30E-37 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0211 K27971 - csv:101215688 795.038