Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0222 ATGGCACCGCTCTTAAACGATCACTTCAGTTTTCAAACGCCAGAAAATGAGGCTGTTATTACTAAAAAAATTCCTCGCTCTGAACACACCAACAAGTATCCTACTTGGTATTCACCAGATACAGGAATTTGTCGTAGTGTTCATGCCCCCAGAGAAGTTCCCTCTGACCCATTTCTTGATGTTGTCTCCTTCATCTTCTCCTTCCAACACAATGGACATTCAGCTCTCATTGATTCCTCAACTGGAAATTCAATATCTTACAGAGAAATCTTTAGTATGGTCAAGTCTGTGGCTTCTGGCCTCCACAAGTTGGGTATATCACAAGGGGATGTAGTTTTGCTTGTGATACCAAATTCCATTTTCTATCCCATTATTCTTTTGGGTATCCTGTATTTGGGAGCAGTTATTACAACCATGTTTCCTCAAAGCAGTTCCGCAGAAATCAAGAAAAGAACCAGTGATTGCAATGTGCGTTTCGCTTTTACAATGACTCAGAAAATTAAGAATTTTGAAGCACTGGGAATTCAGGCAATTGGGGTACCAGAAAATACGAATTTGGACTTGATGAGGCCTATGGGATTTTCTTCATTTTATGAGCTTATTTCAGGTGGTTCTGATTTGAATAAAAGACCAGTGATTAGACAAGAAGATACGGCTGCTATATTGTTTTCTTCAGGTACTACTGGAGTGAGCAAAGGGGTTATGTTAACACATAGAAATTTCATATCTACGATCGAGCTTTTTGTCCGGTTTGAAGCTTCACAGTATGAATATTTGCCTACAGAGAATGTGTATTTGGCTGCTATACCAATGTTTCATATATATGGTCTCTCCATTTTTGTGATGGGATTAATGTCATTGGGGTCTAGTATTGTTGTAATGAGCAAATTTGATGTCAAAAAGGTGGTCAAGGCTATTGACAGATTTAAAGTCACACATTTTCCAGTTGTTCCACCAATAATGACAACTATGGCTAGGACTGCAGAGAAAATTGGCGTCCATAGATTTAGAAGTTTGAAACAAGTTTCTTGTGGGGCTGCTTCTTTGAACAAGAGGACCATTGACGATTTTGTGCAGGCTCTCCCTCATGTTGACTTCATTCAGGGATATGGCATGACTGAGTCCACAGCTGTAGGAACCCGCGGCTACAATACCAAAAATATTAGAAATTATTTGTCAGTGGGACTTTTAGCTCCAAACACAGAAGCTAAAGTAGTTGATTGGGTTACCGGATCTTTCATGCCTCCTGGTAAAACTGGCGAACTTTTGTTACGCGGACCTGGTTCAATGAAAGGGTACTTGAATAATCCAGAGGCAACAATGTCCACAATAGACCAAGAAAATTGGCTACATACTGGAGACATTGTCTACTTTGACCGAGAAGGATACTTATATGTTGTTGACCGTTTGAAGGAGGTTATAAAGTATAAAGGCTTTCAGATTGCCCCTACTGATTTAGAAGCTGTGGTGATCACACATCCAGAAGTTCTTGATACTGCAGTAACAGCGGCCAAAGATGAAGAATGTGGAGAGATTCCAGTGGCATTTGTGGTAAAGAAGCCAGGAAGCACACTCTCACAAAAAGATGTTATTGATTATGTTGCTCAACAGGTTGCACCATATAAAAAAATCAGAAAAGTGGTTTTTACAGAATCAATACCAAAATCTGCTGCTGGCAAAGTACTTCGTAAGGAACTGGGGAAGTATATGCCTTCTAAACTATGA 1725 39.77 MAPLLNDHFSFQTPENEAVITKKIPRSEHTNKYPTWYSPDTGICRSVHAPREVPSDPFLDVVSFIFSFQHNGHSALIDSSTGNSISYREIFSMVKSVASGLHKLGISQGDVVLLVIPNSIFYPIILLGILYLGAVITTMFPQSSSAEIKKRTSDCNVRFAFTMTQKIKNFEALGIQAIGVPENTNLDLMRPMGFSSFYELISGGSDLNKRPVIRQEDTAAILFSSGTTGVSKGVMLTHRNFISTIELFVRFEASQYEYLPTENVYLAAIPMFHIYGLSIFVMGLMSLGSSIVVMSKFDVKKVVKAIDRFKVTHFPVVPPIMTTMARTAEKIGVHRFRSLKQVSCGAASLNKRTIDDFVQALPHVDFIQGYGMTESTAVGTRGYNTKNIRNYLSVGLLAPNTEAKVVDWVTGSFMPPGKTGELLLRGPGSMKGYLNNPEATMSTIDQENWLHTGDIVYFDREGYLYVVDRLKEVIKYKGFQIAPTDLEAVVITHPEVLDTAVTAAKDEECGEIPVAFVVKKPGSTLSQKDVIDYVAQQVAPYKKIRKVVFTESIPKSAAGKVLRKELGKYMPSKL 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2229190 2233059 - CcPI632755_07g002220.1 Cco07g0222 182875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0222 574 FunFam 4-coumarate--CoA ligase 2 472 573 - -
Cco07g0222 574 Pfam AMP-binding enzyme C-terminal domain 486 560 IPR025110 -
Cco07g0222 574 CDD 4CL 53 566 - -
Cco07g0222 574 Gene3D - 472 571 IPR045851 -
Cco07g0222 574 Gene3D - 47 471 IPR042099 -
Cco07g0222 574 Pfam AMP-binding enzyme 70 434 IPR000873 -
Cco07g0222 574 FunFam Long-chain-fatty-acid--CoA ligase FadD 49 471 - -
Cco07g0222 574 SUPERFAMILY Acetyl-CoA synthetase-like 69 569 - -
Cco07g0222 574 ProSitePatterns Putative AMP-binding domain signature. 221 232 IPR020845 -
Cco07g0222 574 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 37 566 - GO:0005777(PANTHER)|GO:0006744(PANTHER)|GO:0016405(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2400 Cco-Chr5:32479547 Cco07g0222 Cco-Chr7:2229190 1.70E-106 dispersed
Cco07g0222 Cco-Chr7:2229190 Cco10g1993 Cco-Chr10:33441764 1.60E-107 dispersed
Cco07g0222 Cco-Chr7:2229190 Cco05g1735 Cco-Chr5:25701367 2.50E-124 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0222 K01904 - csv:101219578 1004.97