Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0226 ATGGAGCGGAATTACCCGTATGAGAATGGAGTGATGATGACGAGAGACCCGAAACCAAGGCTGAGATGGACTGCTGATCTTCACGACCGTTTTGTAGACGCGGTCACCAAGCTTGGTGGCCCTGAAAAAGCAACTCCCAAGTCTGTCTTAAGATTGATGGGTTTAAAGGGCTTGACTTTGTACCACTTGAAGAGCCATTTGCAGAAATATAGACTTGGACTGCAAACTCGAAAGCAAAATGTGGCTGAGCAAAAGAATGAAAGCAGTGGGACTCTTAGCAATTTCACCGGTGTAGAGGAAGATGACAGAGGGATGCAAATTGCCGAGGCTCTAAAATCACATGTAGAAGTGCAGAAAACAATACTAGAACAACTAGAGGTACAAAATAAACTACAAATGAGAATAGAGGCTCAAGGAAAATACTTGCAAGATATCTTAGAGAAAGCACAAAAGAGTCTGGCACTCGCCATTGGCAGTAACCTTGGTAGTATTGAAAGCACAGGAATGCAGTTACTAAACTTTGATGCGGCTCTGTCAGATCAAATTGAAAAATTTAAGAAACAAGAAATGAGAGGAGGCATAGCAGACGTAAATGGTGTTTGTAAGAAGACCAATGATTCACTCATCCAGATATGCAAACTGGAGGCTGGAGAAGAAGCTACAATAAACGAGTTTAATGTTGAAAAGAATATGATCAACTTTGATTTGAATTCCAAAGGCGGCTATGATTACAGTGCAAATGCGGCTGAAATACTTGACGCCAAAGTACTTCCTTGTTCAAGGTAA 786 41.48 MERNYPYENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPEKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGLQTRKQNVAEQKNESSGTLSNFTGVEEDDRGMQIAEALKSHVEVQKTILEQLEVQNKLQMRIEAQGKYLQDILEKAQKSLALAIGSNLGSIESTGMQLLNFDAALSDQIEKFKKQEMRGGIADVNGVCKKTNDSLIQICKLEAGEEATINEFNVEKNMINFDLNSKGGYDYSANAAEILDAKVLPCSR 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2286328 2289706 + CcPI632755_07g002260.1 Cco07g0226 182879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0226 261 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 240 IPR046955 GO:0003700(InterPro)
Cco07g0226 261 Pfam Myb-like DNA-binding domain 20 71 IPR001005 -
Cco07g0226 261 Pfam MYB-CC type transfactor, LHEQLE motif 105 151 IPR025756 -
Cco07g0226 261 Gene3D - 17 74 - -
Cco07g0226 261 NCBIfam myb-like DNA-binding domain, SHAQKYF class 18 72 IPR006447 GO:0003677(InterPro)
Cco07g0226 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 75 IPR017930 -
Cco07g0226 261 FunFam Myb family transcription factor 17 75 - -
Cco07g0226 261 SUPERFAMILY Homeodomain-like 18 75 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0129 Cco-Chr7:1365985 Cco07g0226 Cco-Chr7:2286328 1.90E-25 dispersed
Cco07g0226 Cco-Chr7:2286328 Cco09g2488 Cco-Chr9:39010121 2.10E-30 dispersed
Cco07g0226 Cco-Chr7:2286328 Cco02g2008 Cco-Chr2:33035249 2.30E-32 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59594 PF00249 Myb_DNA-binding 2.70E-07 CL0123 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0226 - - - 0.0