Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0234 ATGTCCCTCCTTAGTAGATTCTTTTACCGAAGACCCCCAGATGGGTTGCTGGAATTTGTTGAACGAGTATATATTTTTGATTCGTGCTTTTCAACTGAAGTATTGCCCGATGGTATGTACCAAATATATCTGCACGAAATCATAAACGAATTACATGAAGAATTCCCGGATTCCTCCTTTCTTGCATTTAATTTTCGTGAGGGGGAGAATAGGAGCCAATTTTCAGAAATGTTGTGCGAGTATGATGTCACTGTGATGGATTATCCTCGACAATACGAAGGTTGCCCTCTTCTTCCATTGTCGTTGATACAGCATTTCCTCCGTGTCTGTGAAAGTTGGCTTCTGCTTGGTAACCAACAAAATGTCATTCTTCTCCACTGTGAGAGGGGAGGTTGGCCACTCTTAGCATTCCTTTTGGCTAGCTTTTTGATATTTAGAAAAATGCAAAATGGTGAGCGGAAAACTCTTGAAATTGTACATCGAGAAGCTCCCAAAGGGTTTTTGCAGCTCTTGTCACCATTAAATCCATTTCCATCTCAGCTCCGCTACTTGCAGTATGTTGCAAGGAGAAATATAGTCTCTGAGTGGCCACCACCTGAGCGAGCACTCTCTTTAGATTGTGTAATTCTTCGTGGCATTCCGGGTTTTGATTCTCAGAATGGTTGCAGACCGGTCATTCGCATTTTTGGGAGGAATCTTTTTAGTAAGGGTGGGCTCTCCACGCAGATGCTTTTCTCTATGCCTAAGAAGAACAAGCCCCTCCGTCACTACCGTCAGGCAGACTGTGATGTGATTAAAATAGACGTGCAGTGTTTGGTTCAAGGAGATGTAGTGTTGGAGTGTTCACATTTGGAATCGGAACCAGAAAGAGAAGTTATGATGTTTCGTATTATGTTTAATACAGCATTTATTCGATCAAACATACTGATGCTAACCTCTGAAAATTTGGACATTCTTTGGGATTCAAAGGAGCGTTATCCAAAAGGCTTTCGAGCCGAGGTTTTGTTTGGGGAGATGGAAAGCATCTCCCCTCCAAGAGCTCCAACCTCCATTTTGAATGGCGAAGAGAAAGGTGGATTACCAATTGAAGCATTTTCCAAGGTTCAAGAACTTTTTAGTGGTGTCGAGTGGATTGATAGCAACGATGATGCTGCCTTGTGGCTACTTAAGAATCTTTCTGCCTTGAGTGATGTGAAAGAATTGTCAAGATTGCAAAATAAAACAAGTTCATATTCCTCACCAGTGGATTCTGAAGAGGAAAATAATACATCTAGCACTGCCGATAGTTCAGATGAAGTCTTTGATATGATTACAAAGCCTTTTGTTGATTCAACTAATATCAACTTTACAATTCCGGCCATGGTACATTCTTCTGAATTATTGTCTGACAAGATTGGTGCTAATGAAGTGAATATTTCATCAGAGTCTCCTCAATCTTCTGATGAATTTCAAGACAAGATATTTTCAAATAAAGAACCTCTACCCTCTTCATCACCTCCACTAACTTCTTTTGGCTCCCCAGCCCTTCCTACAAGTTCTTCAATGTCATCGCCACTGTTGCCTTCATCTAATCTACCATCTGCCAATGCTAGTGGGGAACTTGTCTCAAATAGAATGGCACCCACTGTTAAAGTGATTCCTCCACCACCGCCGCCACCACCTTTTTCTCTATCACATAATAAACCTCATGTAGAAACTTCCTTTGGTTCAGATTTGACCACTGTGACAATGCATGGGAGACCCCCTCCACCTCCACCTCCACCTCCACCTGAATGTCCTACTAGTAACAATTCTATTACAGCCTCTACTCATTCACTTTCTCATGTTCCTAAATTGTCTGATACTCCTCCACCCCCACCTCCACCTCCTCCTTTTGTTCCAAAATCTTCTAGTGCTCCTCCACCTCCGCCTCCACCTCCAATTCCAAAATCTTCTAGTGCTCCCCCGCCTCCGCCCCTGGTTCCAAAATCTTTTGGTGCTCCCCCACCTCCACCTCCACCTCCACCTATAGTTCCAAAATCTTCTAGTGCTCCTCCACCTCCGCCTCCGCCTCCACCTCCAGTTTCAAAATCTTCTAATGCTCCTCCACCTCCTCCTCCTCCACCTCCATTTCTAAAGTCATCTAATGCTCCTCCACCTCCGCCTCCGCCTCCGCTTCTAAAATCATCTAGTGCTCCTCCACCTCCACCTCCGCCTCCACCTCCAAAATCTTCTAGTGCTCTGCCACCTCCACCTCCACCTCCACCTCCACCTCCACCTCCACCTCCACCTTCAATTCCAAAGCTTTCTGGTGCTCCTCCACCTCCACCTCCTCTTCCACAATCAAATCGTGGTGCACCAGTTCCACCTCCTCCACCACCAAAACCTCCCAGTGTTGAGCTGCCAAGTCATGGTGCTAAATCAACTAGACCTCCTCCACCTCCTCCACCAGCAAAGCCCTTCAATGCTTATCCTCCGACAAGCCACGGTGCTACACCAATGCCACCCCCTCCCCCCGGGTCAAGAGGATCAATTGTACCACCACCTCCTCCTCCTTCTGGACGAGGCAAAGCTTCCCTAGGATCAACAACTCAAGGAAGAGGCCGAGTTGCTACAGGAGTTGTAAATGCTCCCAAAAAAACCACTTTAAAACCATTACACTGGGTAAAAGTTACTCGAGCAATGCAAGGGAGTTTATGGGCTGACTCACAAAAGCAGGAAAATCAATCGAGGGCCCCAGAAATAGACATCTCTGAACTTGAAAGTCTATTCTCAGCAGCCTCTGCTTCTGATGGAAGTGGCAGCAAAGGTGGAGGACGACGTGGTTCCAGCATCAACAAACCTGAAAAAGTGCAACTGATTGACCTGCGGAGAGCATATAACTGTGAAATAATGCTCTCAAAAATAAAGATTCCCTTACCGGATATGATAAATTCAGTTCTTGCATTGGATTCTTCTGCTCTTGATATTGACCAGGTTGAGAATCTCATCAAGTTTTGTCCTACTAGGGAAGAGATGGAAACGTTGAAGAGTTATACAGGTGACAGAGAAATGCTTGGAAAGTGTGAGCAGTTTTTTCTCGAGCTAATGAAGGTCCCACGGATAGAGCCCAAGTTACGAGTATTTGCTTTCAAAATCACCTTTTCTAGTCAGGTGAATGATTTGAGATATCATTTGAACACAATAAATGATGCTACGAGAGAGGTCAAAGAATCTGCAAAATTGCGTCAGATAATGCAAACGATTCTTACACTGGGAAATGCGTTAAACCAGGGTACTGCTCGAGGCTCAGCTATAGGTTTTAAGTTGGACAGCCTCCTTAAATTGTCTGACACTCGGGCAAGAAACAACAAAATGACTTTGATGCATTATTTATGTAAGCTCATTGCAGAGAAAATGCCAGAGTTGCTTGATTTTGACAAGGACCTCGTTCATTTAGAAGCTGCCTCTAAGATTCAATTGAAAGCATTGGCTGAGGAAATGCAAGCAGTGAGTAAAGGTCTTGAAAAGGTGGAGCAAGAGCTAACCGCTTCAGAAAATGACGGTGCCATCTCTGTTGGTTTCCAGAAGGTGCTGAAGAATTTTCTTGATACGGCTGAAGCTGAAGTAAGGGCACTTATCTCTTTATATTCTGAAGTGGGGAGAAACGCTGATTCACTATCCCAGTACTTTGGCGAGGATCCAGCTCGGTGCCCCTTTGAGCAAGTTACTCAAATTTTAATAGTCTTCGTTAAGATGTTCAAGAAGTCACGAGAAGAAAATGAAAGGCAGGCCGATGCTGATAAGAGAAAAACAGAGAAGGAAGCCATGAAAGAACGAAGTTCGGTTAAAGCAAAATTTGTGATTCATGGACTTCCATCAAGGTTGGCTCTTTACCTTCCTGTACAGCCATTTCTTTCATCAATATCGTGGCTTGTAAATACGACGCGACGCAATTACAGGCTCGGGGAGTGGTTGCCATTTGACAATAGAGGTTCGAGTGTTGATCTCAACTTGACATTGTCATTATGGTAA 3993 44.3 MSLLSRFFYRRPPDGLLEFVERVYIFDSCFSTEVLPDGMYQIYLHEIINELHEEFPDSSFLAFNFREGENRSQFSEMLCEYDVTVMDYPRQYEGCPLLPLSLIQHFLRVCESWLLLGNQQNVILLHCERGGWPLLAFLLASFLIFRKMQNGERKTLEIVHREAPKGFLQLLSPLNPFPSQLRYLQYVARRNIVSEWPPPERALSLDCVILRGIPGFDSQNGCRPVIRIFGRNLFSKGGLSTQMLFSMPKKNKPLRHYRQADCDVIKIDVQCLVQGDVVLECSHLESEPEREVMMFRIMFNTAFIRSNILMLTSENLDILWDSKERYPKGFRAEVLFGEMESISPPRAPTSILNGEEKGGLPIEAFSKVQELFSGVEWIDSNDDAALWLLKNLSALSDVKELSRLQNKTSSYSSPVDSEEENNTSSTADSSDEVFDMITKPFVDSTNINFTIPAMVHSSELLSDKIGANEVNISSESPQSSDEFQDKIFSNKEPLPSSSPPLTSFGSPALPTSSSMSSPLLPSSNLPSANASGELVSNRMAPTVKVIPPPPPPPPFSLSHNKPHVETSFGSDLTTVTMHGRPPPPPPPPPPECPTSNNSITASTHSLSHVPKLSDTPPPPPPPPPFVPKSSSAPPPPPPPPIPKSSSAPPPPPLVPKSFGAPPPPPPPPPIVPKSSSAPPPPPPPPPPVSKSSNAPPPPPPPPPFLKSSNAPPPPPPPPLLKSSSAPPPPPPPPPPKSSSALPPPPPPPPPPPPPPPPSIPKLSGAPPPPPPLPQSNRGAPVPPPPPPKPPSVELPSHGAKSTRPPPPPPPAKPFNAYPPTSHGATPMPPPPPGSRGSIVPPPPPPSGRGKASLGSTTQGRGRVATGVVNAPKKTTLKPLHWVKVTRAMQGSLWADSQKQENQSRAPEIDISELESLFSAASASDGSGSKGGGRRGSSINKPEKVQLIDLRRAYNCEIMLSKIKIPLPDMINSVLALDSSALDIDQVENLIKFCPTREEMETLKSYTGDREMLGKCEQFFLELMKVPRIEPKLRVFAFKITFSSQVNDLRYHLNTINDATREVKESAKLRQIMQTILTLGNALNQGTARGSAIGFKLDSLLKLSDTRARNNKMTLMHYLCKLIAEKMPELLDFDKDLVHLEAASKIQLKALAEEMQAVSKGLEKVEQELTASENDGAISVGFQKVLKNFLDTAEAEVRALISLYSEVGRNADSLSQYFGEDPARCPFEQVTQILIVFVKMFKKSREENERQADADKRKTEKEAMKERSSVKAKFVIHGLPSRLALYLPVQPFLSSISWLVNTTRRNYRLGEWLPFDNRGSSVDLNLTLSLW 1330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2398977 2410005 + CcPI632755_07g002340.1 Cco07g0234 182887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0234 1330 Gene3D Protein tyrosine phosphatase superfamily 16 191 IPR029021 -
Cco07g0234 1330 MobiDBLite consensus disorder prediction 560 574 - -
Cco07g0234 1330 FunFam Formin-like protein 865 1252 - -
Cco07g0234 1330 SMART it6_source 581 1310 IPR015425 -
Cco07g0234 1330 MobiDBLite consensus disorder prediction 800 848 - -
Cco07g0234 1330 SUPERFAMILY Formin homology 2 domain (FH2 domain) 879 1259 - -
Cco07g0234 1330 MobiDBLite consensus disorder prediction 543 558 - -
Cco07g0234 1330 ProSiteProfiles Formin homology-2 (FH2) domain profile. 866 1266 IPR015425 -
Cco07g0234 1330 MobiDBLite consensus disorder prediction 920 939 - -
Cco07g0234 1330 MobiDBLite consensus disorder prediction 578 594 - -
Cco07g0234 1330 Coils Coil 1147 1174 - -
Cco07g0234 1330 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Cco07g0234 1330 MobiDBLite consensus disorder prediction 489 871 - -
Cco07g0234 1330 SMART PTEN_C2_2 198 338 IPR014020 -
Cco07g0234 1330 PANTHER FORMIN-J 766 1264 IPR051144 -
Cco07g0234 1330 MobiDBLite consensus disorder prediction 489 536 - -
Cco07g0234 1330 Gene3D Formin, FH2 domain 868 1252 IPR042201 -
Cco07g0234 1330 MobiDBLite consensus disorder prediction 406 431 - -
Cco07g0234 1330 MobiDBLite consensus disorder prediction 612 793 - -
Cco07g0234 1330 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 339 IPR035892 -
Cco07g0234 1330 Gene3D - 197 342 - -
Cco07g0234 1330 Pfam Formin Homology 2 Domain 871 1241 IPR015425 -
Cco07g0234 1330 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 19 187 IPR029021 -
Cco07g0234 1330 MobiDBLite consensus disorder prediction 595 610 - -
Cco07g0234 1330 Pfam C2 domain of PTEN tumour-suppressor protein 198 338 IPR014020 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1422 Cco-Chr6:24739804 Cco07g0234 Cco-Chr7:2398977 4.60E-259 dispersed
Cco06g1795 Cco-Chr6:28351065 Cco07g0234 Cco-Chr7:2398977 4.60E-142 dispersed
Cco07g0234 Cco-Chr7:2398977 Cco05g1867 Cco-Chr5:27576127 4.20E-260 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0234 K28090 - csv:101217517 1047.34