Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0234 ATGTCCCTCCTTAGTAGATTCTTTTACCGAAGACCCCCAGATGGGTTGCTGGAATTTGTTGAACGAGTATATATTTTTGATTCGTGCTTTTCAACTGAAGTATTGCCCGATGGTATGTACCAAATATATCTGCACGAAATCATAAACGAATTACATGAAGAATTCCCGGATTCCTCCTTTCTTGCATTTAATTTTCGTGAGGGGGAGAATAGGAGCCAATTTTCAGAAATGTTGTGCGAGTATGATGTCACTGTGATGGATTATCCTCGACAATACGAAGGTTGCCCTCTTCTTCCATTGTCGTTGATACAGCATTTCCTCCGTGTCTGTGAAAGTTGGCTTCTGCTTGGTAACCAACAAAATGTCATTCTTCTCCACTGTGAGAGGGGAGGTTGGCCACTCTTAGCATTCCTTTTGGCTAGCTTTTTGATATTTAGAAAAATGCAAAATGGTGAGCGGAAAACTCTTGAAATTGTACATCGAGAAGCTCCCAAAGGGTTTTTGCAGCTCTTGTCACCATTAAATCCATTTCCATCTCAGCTCCGCTACTTGCAGTATGTTGCAAGGAGAAATATAGTCTCTGAGTGGCCACCACCTGAGCGAGCACTCTCTTTAGATTGTGTAATTCTTCGTGGCATTCCGGGTTTTGATTCTCAGAATGGTTGCAGACCGGTCATTCGCATTTTTGGGAGGAATCTTTTTAGTAAGGGTGGGCTCTCCACGCAGATGCTTTTCTCTATGCCTAAGAAGAACAAGCCCCTCCGTCACTACCGTCAGGCAGACTGTGATGTGATTAAAATAGACGTGCAGTGTTTGGTTCAAGGAGATGTAGTGTTGGAGTGTTCACATTTGGAATCGGAACCAGAAAGAGAAGTTATGATGTTTCGTATTATGTTTAATACAGCATTTATTCGATCAAACATACTGATGCTAACCTCTGAAAATTTGGACATTCTTTGGGATTCAAAGGAGCGTTATCCAAAAGGCTTTCGAGCCGAGGTTTTGTTTGGGGAGATGGAAAGCATCTCCCCTCCAAGAGCTCCAACCTCCATTTTGAATGGCGAAGAGAAAGGTGGATTACCAATTGAAGCATTTTCCAAGGTTCAAGAACTTTTTAGTGGTGTCGAGTGGATTGATAGCAACGATGATGCTGCCTTGTGGCTACTTAAGAATCTTTCTGCCTTGAGTGATGTGAAAGAATTGTCAAGATTGCAAAATAAAACAAGTTCATATTCCTCACCAGTGGATTCTGAAGAGGAAAATAATACATCTAGCACTGCCGATAGTTCAGATGAAGTCTTTGATATGATTACAAAGCCTTTTGTTGATTCAACTAATATCAACTTTACAATTCCGGCCATGGTACATTCTTCTGAATTATTGTCTGACAAGATTGGTGCTAATGAAGTGAATATTTCATCAGAGTCTCCTCAATCTTCTGATGAATTTCAAGACAAGATATTTTCAAATAAAGAACCTCTACCCTCTTCATCACCTCCACTAACTTCTTTTGGCTCCCCAGCCCTTCCTACAAGTTCTTCAATGTCATCGCCACTGTTGCCTTCATCTAATCTACCATCTGCCAATGCTAGTGGGGAACTTGTCTCAAATAGAATGGCACCCACTGTTAAAGTGATTCCTCCACCACCGCCGCCACCACCTTTTTCTCTATCACATAATAAACCTCATGTAGAAACTTCCTTTGGTTCAGATTTGACCACTGTGACAATGCATGGGAGACCCCCTCCACCTCCACCTCCACCTCCACCTGAATGTCCTACTAGTAACAATTCTATTACAGCCTCTACTCATTCACTTTCTCATGTTCCTAAATTGTCTGATACTCCTCCACCCCCACCTCCACCTCCTCCTTTTGTTCCAAAATCTTCTAGTGCTCCTCCACCTCCGCCTCCACCTCCAATTCCAAAATCTTCTAGTGCTCCCCCGCCTCCGCCCCTGGTTCCAAAATCTTTTGGTGCTCCCCCACCTCCACCTCCACCTCCACCTATAGTTCCAAAATCTTCTAGTGCTCCTCCACCTCCGCCTCCGCCTCCACCTCCAGTTTCAAAATCTTCTAATGCTCCTCCACCTCCTCCTCCTCCACCTCCATTTCTAAAGTCATCTAATGCTCCTCCACCTCCGCCTCCGCCTCCGCTTCTAAAATCATCTAGTGCTCCTCCACCTCCACCTCCGCCTCCACCTCCAAAATCTTCTAGTGCTCTGCCACCTCCACCTCCACCTCCACCTCCACCTCCACCTCCACCTCCACCTTCAATTCCAAAGCTTTCTGGTGCTCCTCCACCTCCACCTCCTCTTCCACAATCAAATCGTGGTGCACCAGTTCCACCTCCTCCACCACCAAAACCTCCCAGTGTTGAGCTGCCAAGTCATGGTGCTAAATCAACTAGACCTCCTCCACCTCCTCCACCAGCAAAGCCCTTCAATGCTTATCCTCCGACAAGCCACGGTGCTACACCAATGCCACCCCCTCCCCCCGGGTCAAGAGGATCAATTGTACCACCACCTCCTCCTCCTTCTGGACGAGGCAAAGCTTCCCTAGGATCAACAACTCAAGGAAGAGGCCGAGTTGCTACAGGAGTTGTAAATGCTCCCAAAAAAACCACTTTAAAACCATTACACTGGGTAAAAGTTACTCGAGCAATGCAAGGGAGTTTATGGGCTGACTCACAAAAGCAGGAAAATCAATCGAGGGCCCCAGAAATAGACATCTCTGAACTTGAAAGTCTATTCTCAGCAGCCTCTGCTTCTGATGGAAGTGGCAGCAAAGGTGGAGGACGACGTGGTTCCAGCATCAACAAACCTGAAAAAGTGCAACTGATTGACCTGCGGAGAGCATATAACTGTGAAATAATGCTCTCAAAAATAAAGATTCCCTTACCGGATATGATAAATTCAGTTCTTGCATTGGATTCTTCTGCTCTTGATATTGACCAGGTTGAGAATCTCATCAAGTTTTGTCCTACTAGGGAAGAGATGGAAACGTTGAAGAGTTATACAGGTGACAGAGAAATGCTTGGAAAGTGTGAGCAGTTTTTTCTCGAGCTAATGAAGGTCCCACGGATAGAGCCCAAGTTACGAGTATTTGCTTTCAAAATCACCTTTTCTAGTCAGGTGAATGATTTGAGATATCATTTGAACACAATAAATGATGCTACGAGAGAGGTCAAAGAATCTGCAAAATTGCGTCAGATAATGCAAACGATTCTTACACTGGGAAATGCGTTAAACCAGGGTACTGCTCGAGGCTCAGCTATAGGTTTTAAGTTGGACAGCCTCCTTAAATTGTCTGACACTCGGGCAAGAAACAACAAAATGACTTTGATGCATTATTTATGTAAGCTCATTGCAGAGAAAATGCCAGAGTTGCTTGATTTTGACAAGGACCTCGTTCATTTAGAAGCTGCCTCTAAGATTCAATTGAAAGCATTGGCTGAGGAAATGCAAGCAGTGAGTAAAGGTCTTGAAAAGGTGGAGCAAGAGCTAACCGCTTCAGAAAATGACGGTGCCATCTCTGTTGGTTTCCAGAAGGTGCTGAAGAATTTTCTTGATACGGCTGAAGCTGAAGTAAGGGCACTTATCTCTTTATATTCTGAAGTGGGGAGAAACGCTGATTCACTATCCCAGTACTTTGGCGAGGATCCAGCTCGGTGCCCCTTTGAGCAAGTTACTCAAATTTTAATAGTCTTCGTTAAGATGTTCAAGAAGTCACGAGAAGAAAATGAAAGGCAGGCCGATGCTGATAAGAGAAAAACAGAGAAGGAAGCCATGAAAGAACGAAGTTCGGTTAAAGCAAAATTTGTGATTCATGGACTTCCATCAAGGTTGGCTCTTTACCTTCCTGTACAGCCATTTCTTTCATCAATATCGTGGCTTGTAAATACGACGCGACGCAATTACAGGCTCGGGGAGTGGTTGCCATTTGACAATAGAGGTTCGAGTGTTGATCTCAACTTGACATTGTCATTATGGTAA 3993 44.3 MSLLSRFFYRRPPDGLLEFVERVYIFDSCFSTEVLPDGMYQIYLHEIINELHEEFPDSSFLAFNFREGENRSQFSEMLCEYDVTVMDYPRQYEGCPLLPLSLIQHFLRVCESWLLLGNQQNVILLHCERGGWPLLAFLLASFLIFRKMQNGERKTLEIVHREAPKGFLQLLSPLNPFPSQLRYLQYVARRNIVSEWPPPERALSLDCVILRGIPGFDSQNGCRPVIRIFGRNLFSKGGLSTQMLFSMPKKNKPLRHYRQADCDVIKIDVQCLVQGDVVLECSHLESEPEREVMMFRIMFNTAFIRSNILMLTSENLDILWDSKERYPKGFRAEVLFGEMESISPPRAPTSILNGEEKGGLPIEAFSKVQELFSGVEWIDSNDDAALWLLKNLSALSDVKELSRLQNKTSSYSSPVDSEEENNTSSTADSSDEVFDMITKPFVDSTNINFTIPAMVHSSELLSDKIGANEVNISSESPQSSDEFQDKIFSNKEPLPSSSPPLTSFGSPALPTSSSMSSPLLPSSNLPSANASGELVSNRMAPTVKVIPPPPPPPPFSLSHNKPHVETSFGSDLTTVTMHGRPPPPPPPPPPECPTSNNSITASTHSLSHVPKLSDTPPPPPPPPPFVPKSSSAPPPPPPPPIPKSSSAPPPPPLVPKSFGAPPPPPPPPPIVPKSSSAPPPPPPPPPPVSKSSNAPPPPPPPPPFLKSSNAPPPPPPPPLLKSSSAPPPPPPPPPPKSSSALPPPPPPPPPPPPPPPPSIPKLSGAPPPPPPLPQSNRGAPVPPPPPPKPPSVELPSHGAKSTRPPPPPPPAKPFNAYPPTSHGATPMPPPPPGSRGSIVPPPPPPSGRGKASLGSTTQGRGRVATGVVNAPKKTTLKPLHWVKVTRAMQGSLWADSQKQENQSRAPEIDISELESLFSAASASDGSGSKGGGRRGSSINKPEKVQLIDLRRAYNCEIMLSKIKIPLPDMINSVLALDSSALDIDQVENLIKFCPTREEMETLKSYTGDREMLGKCEQFFLELMKVPRIEPKLRVFAFKITFSSQVNDLRYHLNTINDATREVKESAKLRQIMQTILTLGNALNQGTARGSAIGFKLDSLLKLSDTRARNNKMTLMHYLCKLIAEKMPELLDFDKDLVHLEAASKIQLKALAEEMQAVSKGLEKVEQELTASENDGAISVGFQKVLKNFLDTAEAEVRALISLYSEVGRNADSLSQYFGEDPARCPFEQVTQILIVFVKMFKKSREENERQADADKRKTEKEAMKERSSVKAKFVIHGLPSRLALYLPVQPFLSSISWLVNTTRRNYRLGEWLPFDNRGSSVDLNLTLSLW 1330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2398977 2410005 + CcPI632755_07g002340.1 Cco07g0234 182887

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0234 1330 Gene3D Protein tyrosine phosphatase superfamily 16 191 IPR029021 -
Cco07g0234 1330 MobiDBLite consensus disorder prediction 560 574 - -
Cco07g0234 1330 FunFam Formin-like protein 865 1252 - -
Cco07g0234 1330 SMART it6_source 581 1310 IPR015425 -
Cco07g0234 1330 MobiDBLite consensus disorder prediction 800 848 - -
Cco07g0234 1330 SUPERFAMILY Formin homology 2 domain (FH2 domain) 879 1259 - -
Cco07g0234 1330 MobiDBLite consensus disorder prediction 543 558 - -
Cco07g0234 1330 ProSiteProfiles Formin homology-2 (FH2) domain profile. 866 1266 IPR015425 -
Cco07g0234 1330 MobiDBLite consensus disorder prediction 920 939 - -
Cco07g0234 1330 MobiDBLite consensus disorder prediction 578 594 - -
Cco07g0234 1330 Coils Coil 1147 1174 - -
Cco07g0234 1330 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Cco07g0234 1330 MobiDBLite consensus disorder prediction 489 871 - -
Cco07g0234 1330 SMART PTEN_C2_2 198 338 IPR014020 -
Cco07g0234 1330 PANTHER FORMIN-J 766 1264 IPR051144 -
Cco07g0234 1330 MobiDBLite consensus disorder prediction 489 536 - -
Cco07g0234 1330 Gene3D Formin, FH2 domain 868 1252 IPR042201 -
Cco07g0234 1330 MobiDBLite consensus disorder prediction 406 431 - -
Cco07g0234 1330 MobiDBLite consensus disorder prediction 612 793 - -
Cco07g0234 1330 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 339 IPR035892 -
Cco07g0234 1330 Gene3D - 197 342 - -
Cco07g0234 1330 Pfam Formin Homology 2 Domain 871 1241 IPR015425 -
Cco07g0234 1330 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 19 187 IPR029021 -
Cco07g0234 1330 MobiDBLite consensus disorder prediction 595 610 - -
Cco07g0234 1330 Pfam C2 domain of PTEN tumour-suppressor protein 198 338 IPR014020 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0234 K28090 - - csv:101217517 1047.34
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1422 Cco-Chr6:24739804 Cco07g0234 Cco-Chr7:2398977 4.60E-259 dispersed
Cco06g1795 Cco-Chr6:28351065 Cco07g0234 Cco-Chr7:2398977 4.60E-142 dispersed
Cco07g0234 Cco-Chr7:2398977 Cco05g1867 Cco-Chr5:27576127 4.20E-260 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco07g0242 . 181 1052 FH2 protein (formin) Gene Family AT3G25500 52.1 6.0e-193 671.8
Cco11g0111 . 459 935 FH2 protein (formin) Gene Family AT3G25500 66.9 2.2e-166 583.6
Cco02g1315 . 438 893 FH2 protein (formin) Gene Family AT3G25500 60.5 1.7e-142 504.2
Cco03g1771 . 495 892 FH2 protein (formin) Gene Family AT3G25500 51.7 4.0e-104 376.7
Cco07g0242 . 615 1069 FH2 protein (formin) Gene Family AT2G43800 60.3 5.4e-142 502.3
Cco02g1315 . 472 909 FH2 protein (formin) Gene Family AT2G43800 55.3 1.7e-124 444.1
Cco02g0897 . 452 591 FH2 protein (formin) Gene Family AT4G15200 71.1 4.0e-48 189.5
Cco05g1695 . 550 696 FH2 protein (formin) Gene Family AT4G15200 66.7 3.4e-47 186.4
Cco05g1695 . 551 987 FH2 protein (formin) Gene Family AT5G54650 69.2 3.4e-168 589.3
Cco02g0897 . 452 908 FH2 protein (formin) Gene Family AT5G54650 63.2 5.4e-158 555.4
Cco07g0242 . 626 1027 FH2 protein (formin) Gene Family AT5G54650 50.8 2.9e-103 373.6
Cco02g1315 . 31 912 FH2 protein (formin) Gene Family AT5G67470 58.3 3.4e-237 818.5
Cco07g0242 . 607 1069 FH2 protein (formin) Gene Family AT5G67470 58.9 9.9e-136 481.5
Cco11g0111 . 472 917 FH2 protein (formin) Gene Family AT5G67470 60.9 3.3e-131 466.5
Cco03g1771 . 495 894 FH2 protein (formin) Gene Family AT5G67470 50.9 1.2e-104 378.3
Cco05g2759 . 349 832 FH2 protein (formin) Gene Family AT1G59910 52.5 2.5e-126 450.3
Cco07g0242 . 647 1028 FH2 protein (formin) Gene Family AT5G48360 52.6 4.0e-101 366.3
Cco02g1315 . 496 870 FH2 protein (formin) Gene Family AT5G48360 50.7 1.2e-89 328.2
Cco02g1315 . 476 869 FH2 protein (formin) Gene Family AT3G05470 51.6 4.7e-106 382.9
Cco05g1695 . 556 970 FH2 protein (formin) Gene Family AT3G05470 50.6 4.7e-106 382.9
Cco07g0234 . 952 1263 FH2 protein (formin) Gene Family AT1G42980 51.1 2.0e-69 259.6
Cco07g0234 . 1 1270 FH2 protein (formin) Gene Family AT1G31810 65.3 0.0e+00 1223.8
Cco06g1795 . 19 436 FH2 protein (formin) Gene Family AT1G31810 63.9 7.9e-144 508.8
Cco06g1795 . 121 442 FH2 protein (formin) Gene Family AT5G07650 74.8 1.6e-129 460.7
Cco01g1794 . 982 1292 FH2 protein (formin) Gene Family AT5G07650 70.1 1.9e-119 427.2
Cco05g1867 . 1081 1403 FH2 protein (formin) Gene Family AT5G07650 65.0 2.8e-110 396.7
Cco06g1422 . 936 1255 FH2 protein (formin) Gene Family AT5G07650 62.9 6.3e-110 395.6
Cco07g0234 . 936 1267 FH2 protein (formin) Gene Family AT5G07650 59.6 4.5e-108 389.4
Cco06g1795 . 48 435 FH2 protein (formin) Gene Family AT5G07770 69.2 1.5e-140 496.9
Cco01g1794 . 905 1292 FH2 protein (formin) Gene Family AT5G07770 63.0 4.9e-128 455.3
Cco05g1867 . 1005 1395 FH2 protein (formin) Gene Family AT5G07770 59.4 7.2e-119 424.9
Cco06g1422 . 859 1247 FH2 protein (formin) Gene Family AT5G07770 57.3 2.5e-116 416.4
Cco07g0234 . 872 1261 FH2 protein (formin) Gene Family AT5G07770 55.2 3.7e-115 412.5
Cco05g1867 . 997 1403 FH2 protein (formin) Gene Family AT3G32400 76.2 7.5e-170 594.0
Cco06g1422 . 843 1256 FH2 protein (formin) Gene Family AT3G32400 66.6 4.3e-149 525.0
Cco06g1795 . 48 442 FH2 protein (formin) Gene Family AT3G32400 65.2 8.7e-142 500.7
Cco07g0234 . 872 1266 FH2 protein (formin) Gene Family AT3G32400 65.5 1.2e-140 496.9
Cco01g1794 . 875 1295 FH2 protein (formin) Gene Family AT3G32400 58.1 1.1e-131 467.2
Cco05g1867 . 1 1403 FH2 protein (formin) Gene Family AT2G25050 51.1 0.0e+00 1156.4
Cco06g1422 . 1 1256 FH2 protein (formin) Gene Family AT2G25050 50.6 1.0e-294 1010.0
Cco06g1795 . 19 442 FH2 protein (formin) Gene Family AT2G25050 60.4 5.4e-142 502.7
Cco06g1795 . 49 442 FH2 protein (formin) Gene Family AT5G07780 63.0 1.7e-123 439.9
Cco01g1794 . 906 1295 FH2 protein (formin) Gene Family AT5G07780 57.9 3.6e-113 405.6
Cco05g1867 . 1006 1396 FH2 protein (formin) Gene Family AT5G07780 54.3 2.0e-103 373.2
Cco06g1422 . 866 1255 FH2 protein (formin) Gene Family AT5G07780 53.8 1.1e-101 367.5
Cco07g0234 . 873 1262 FH2 protein (formin) Gene Family AT5G07780 52.0 1.1e-101 367.5
Cco06g1795 . 5 451 FH2 protein (formin) Gene Family AT5G07740 79.1 2.6e-187 653.7
Cco06g1795 . 120 449 FH2 protein (formin) Gene Family AT5G07760 74.4 3.3e-128 456.4
Cco01g1794 . 981 1295 FH2 protein (formin) Gene Family AT5G07760 69.3 4.4e-117 419.5
Cco06g1422 . 935 1255 FH2 protein (formin) Gene Family AT5G07760 64.7 3.1e-110 396.7
Cco05g1867 . 1080 1412 FH2 protein (formin) Gene Family AT5G07760 64.0 9.0e-110 395.2
Cco07g0234 . 946 1267 FH2 protein (formin) Gene Family AT5G07760 60.1 5.1e-105 379.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010762 0 1 1 0 0 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 0 1 1 3 1 32