Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0244 ATGACTCTATTTTCATTCTCATTCTTGTTCGTAGTACTTCTTCAGTTATCTTTTCTGTTAAATAGTCTGACTGCCAAAAACGGCGACCACCACCACCACCACCATGTCCGATCACCAGGACTGAACCCGAACCCGAACCCGCGACTCCATCAAGCATTCCTTGCTCTCCAAGCATGGAAAAAAGTCATTTACTCGGACCCAAAAAACCACACTACCAATTGGGTGGGGCCATCAGTTTGCAACTACTTTGGAGTGTATTGTGCCCCATCTCTTGATGACCCAAAAATCCAAGTGGTCGCCGGAATTGACTTAAACCACGGCGACATCGCCGGATTCCTCCCTAACGAATTGGGCCTTTTAACAGATCTTGCTCTGCTTCATCTCAACAGCAACCGATTCTGTGGCATTTTGCCACAATCTTTAGCCAATTTATCTCTTCTCTTTGAATTAGATTTAAGCAACAACAGATTCGTAGGCCCTTTTCCTTCTGTTGTTCTTCTCCTTCCAAAATTAACATATCTTGATCTTCGATTCAACGAATTTGAAGGCCCAATTCCCTCTGAACTCTTCAACAAAACCCTCGACGCCATTTTTATCAACAGCAATCGTTTCACCAACATTATCCCACGAAACATCGGTGGAAAATCAGCCTCTGTGATTGTCTTTGCTAACAACAATTTAAAGGGTTGTCTTCCACCCACAATTGCAAGTTTTGCAAACAGTTTAGAAGAGCTTTTGTTGATCAACACTAGTTTATCTGGCTGTTTGCCACAAGAAATTGGGTTTTTGTATAAATTGAAGGTTTTGGATGTGAGTTTTAACAAATTAATGGGTCCTTTGCCTTATAGTTTAGCTGGGTTAGCTCAATTGGAGCAGTTGAATTTAGCCCATAATTTGTTTAGTGGGAATTTGTATGAAGGTATCTGTAGCCTTCCGAATTTGGAGAATGTGACAGTTTCTTATAATTACTTTTGTGAAGAAGAAGGGATTTGCCGGAATTTGACGGCGAAAGGGATTGCTTTTGATGATCGGCGGAATTGCTTGCCGGAGAAGCCGTTGCAGAGGAGTAAAAAGGAGTGTAGTGCGGTGGTTGAGCGTCCTGTGGACTGTTTTGACCATCCGTGCGGCGGCGGCGGCGGAGGTTATGGTTCTATTATTGCGGCGGTTCCGGCTCCGACGCCAATTTCTTCACCTTCTTCCTTTGTTGCCCCTTCCCACTTGTGA 1224 43.79 MTLFSFSFLFVVLLQLSFLLNSLTAKNGDHHHHHHVRSPGLNPNPNPRLHQAFLALQAWKKVIYSDPKNHTTNWVGPSVCNYFGVYCAPSLDDPKIQVVAGIDLNHGDIAGFLPNELGLLTDLALLHLNSNRFCGILPQSLANLSLLFELDLSNNRFVGPFPSVVLLLPKLTYLDLRFNEFEGPIPSELFNKTLDAIFINSNRFTNIIPRNIGGKSASVIVFANNNLKGCLPPTIASFANSLEELLLINTSLSGCLPQEIGFLYKLKVLDVSFNKLMGPLPYSLAGLAQLEQLNLAHNLFSGNLYEGICSLPNLENVTVSYNYFCEEEGICRNLTAKGIAFDDRRNCLPEKPLQRSKKECSAVVERPVDCFDHPCGGGGGGYGSIIAAVPAPTPISSPSSFVAPSHL 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2512977 2514200 - CcPI632755_07g002440.1 Cco07g0244 182897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0244 407 Pfam Leucine Rich Repeat 265 287 IPR001611 GO:0005515(InterPro)
Cco07g0244 407 Pfam Leucine Rich Repeat 289 311 IPR001611 GO:0005515(InterPro)
Cco07g0244 407 Pfam Leucine Rich Repeat 147 163 IPR001611 GO:0005515(InterPro)
Cco07g0244 407 Pfam Leucine Rich Repeat 125 144 IPR001611 GO:0005515(InterPro)
Cco07g0244 407 Pfam Leucine Rich Repeat 170 191 IPR001611 GO:0005515(InterPro)
Cco07g0244 407 SUPERFAMILY L domain-like 52 326 - -
Cco07g0244 407 Gene3D Ribonuclease Inhibitor 217 340 IPR032675 -
Cco07g0244 407 Gene3D Ribonuclease Inhibitor 52 216 IPR032675 -
Cco07g0244 407 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 21 393 IPR051582 -
Cco07g0244 407 FunFam Leucine-rich repeat extensin-like protein 1 53 214 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0576 Cco-Chr5:4704217 Cco07g0244 Cco-Chr7:2512977 1.20E-50 dispersed
Cco07g0244 Cco-Chr7:2512977 Cco11g0272 Cco-Chr11:2702366 2.80E-29 dispersed
Cco07g0244 Cco-Chr7:2512977 Cco06g1179 Cco-Chr6:21068478 3.20E-33 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0244 - - - 0.0