Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0244 ATGACTCTATTTTCATTCTCATTCTTGTTCGTAGTACTTCTTCAGTTATCTTTTCTGTTAAATAGTCTGACTGCCAAAAACGGCGACCACCACCACCACCACCATGTCCGATCACCAGGACTGAACCCGAACCCGAACCCGCGACTCCATCAAGCATTCCTTGCTCTCCAAGCATGGAAAAAAGTCATTTACTCGGACCCAAAAAACCACACTACCAATTGGGTGGGGCCATCAGTTTGCAACTACTTTGGAGTGTATTGTGCCCCATCTCTTGATGACCCAAAAATCCAAGTGGTCGCCGGAATTGACTTAAACCACGGCGACATCGCCGGATTCCTCCCTAACGAATTGGGCCTTTTAACAGATCTTGCTCTGCTTCATCTCAACAGCAACCGATTCTGTGGCATTTTGCCACAATCTTTAGCCAATTTATCTCTTCTCTTTGAATTAGATTTAAGCAACAACAGATTCGTAGGCCCTTTTCCTTCTGTTGTTCTTCTCCTTCCAAAATTAACATATCTTGATCTTCGATTCAACGAATTTGAAGGCCCAATTCCCTCTGAACTCTTCAACAAAACCCTCGACGCCATTTTTATCAACAGCAATCGTTTCACCAACATTATCCCACGAAACATCGGTGGAAAATCAGCCTCTGTGATTGTCTTTGCTAACAACAATTTAAAGGGTTGTCTTCCACCCACAATTGCAAGTTTTGCAAACAGTTTAGAAGAGCTTTTGTTGATCAACACTAGTTTATCTGGCTGTTTGCCACAAGAAATTGGGTTTTTGTATAAATTGAAGGTTTTGGATGTGAGTTTTAACAAATTAATGGGTCCTTTGCCTTATAGTTTAGCTGGGTTAGCTCAATTGGAGCAGTTGAATTTAGCCCATAATTTGTTTAGTGGGAATTTGTATGAAGGTATCTGTAGCCTTCCGAATTTGGAGAATGTGACAGTTTCTTATAATTACTTTTGTGAAGAAGAAGGGATTTGCCGGAATTTGACGGCGAAAGGGATTGCTTTTGATGATCGGCGGAATTGCTTGCCGGAGAAGCCGTTGCAGAGGAGTAAAAAGGAGTGTAGTGCGGTGGTTGAGCGTCCTGTGGACTGTTTTGACCATCCGTGCGGCGGCGGCGGCGGAGGTTATGGTTCTATTATTGCGGCGGTTCCGGCTCCGACGCCAATTTCTTCACCTTCTTCCTTTGTTGCCCCTTCCCACTTGTGA 1224 43.79 MTLFSFSFLFVVLLQLSFLLNSLTAKNGDHHHHHHVRSPGLNPNPNPRLHQAFLALQAWKKVIYSDPKNHTTNWVGPSVCNYFGVYCAPSLDDPKIQVVAGIDLNHGDIAGFLPNELGLLTDLALLHLNSNRFCGILPQSLANLSLLFELDLSNNRFVGPFPSVVLLLPKLTYLDLRFNEFEGPIPSELFNKTLDAIFINSNRFTNIIPRNIGGKSASVIVFANNNLKGCLPPTIASFANSLEELLLINTSLSGCLPQEIGFLYKLKVLDVSFNKLMGPLPYSLAGLAQLEQLNLAHNLFSGNLYEGICSLPNLENVTVSYNYFCEEEGICRNLTAKGIAFDDRRNCLPEKPLQRSKKECSAVVERPVDCFDHPCGGGGGGYGSIIAAVPAPTPISSPSSFVAPSHL 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2512977 2514200 - CcPI632755_07g002440.1 Cco07g0244 182897

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0244 407 Pfam Leucine Rich Repeat 265 287 IPR001611 GO:0005515(InterPro)
Cco07g0244 407 Pfam Leucine Rich Repeat 289 311 IPR001611 GO:0005515(InterPro)
Cco07g0244 407 Pfam Leucine Rich Repeat 147 163 IPR001611 GO:0005515(InterPro)
Cco07g0244 407 Pfam Leucine Rich Repeat 125 144 IPR001611 GO:0005515(InterPro)
Cco07g0244 407 Pfam Leucine Rich Repeat 170 191 IPR001611 GO:0005515(InterPro)
Cco07g0244 407 SUPERFAMILY L domain-like 52 326 - -
Cco07g0244 407 Gene3D Ribonuclease Inhibitor 217 340 IPR032675 -
Cco07g0244 407 Gene3D Ribonuclease Inhibitor 52 216 IPR032675 -
Cco07g0244 407 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 21 393 IPR051582 -
Cco07g0244 407 FunFam Leucine-rich repeat extensin-like protein 1 53 214 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0244 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0576 Cco-Chr5:4704217 Cco07g0244 Cco-Chr7:2512977 1.20E-50 dispersed
Cco07g0244 Cco-Chr7:2512977 Cco11g0272 Cco-Chr11:2702366 2.80E-29 dispersed
Cco07g0244 Cco-Chr7:2512977 Cco06g1179 Cco-Chr6:21068478 3.20E-33 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco05g0576 . 32 363 Leucine-rich Repeat extension Gene Families AT1G62440 61.3 6.1e-49 193.0
Cco07g0244 . 46 375 Leucine-rich Repeat extension Gene Families AT1G62440 58.8 1.7e-43 174.9
Cco11g0272 . 72 423 Leucine-rich Repeat extension Gene Families AT1G62440 61.6 1.1e-42 172.2
Cco06g1179 . 59 231 Leucine-rich Repeat extension Gene Families AT1G62440 68.8 8.0e-41 166.0
Cco06g1179 . 32 403 Leucine-rich Repeat extension Gene Families AT4G13340 76.7 2.2e-67 254.2
Cco11g0272 . 37 423 Leucine-rich Repeat extension Gene Families AT4G13340 74.0 2.8e-67 253.8
Cco05g0576 . 18 365 Leucine-rich Repeat extension Gene Families AT4G13340 67.3 3.2e-55 213.8
Cco07g0244 . 39 376 Leucine-rich Repeat extension Gene Families AT4G13340 62.5 1.7e-43 174.9
Cco06g0356 . 15 225 Leucine-rich Repeat extension Gene Families AT4G13340 53.4 1.5e-39 161.8
Cco06g0357 . 15 225 Leucine-rich Repeat extension Gene Families AT4G13340 53.4 1.5e-39 161.8
Cco06g0355 . 15 225 Leucine-rich Repeat extension Gene Families AT4G13340 52.5 3.6e-38 157.1
Cco06g0358 . 34 225 Leucine-rich Repeat extension Gene Families AT4G13340 56.8 3.6e-38 157.1
Cco06g1179 . 22 398 Leucine-rich Repeat extension Gene Families AT3G24480 74.6 6.5e-73 271.9
Cco11g0272 . 37 419 Leucine-rich Repeat extension Gene Families AT3G24480 73.0 4.2e-72 269.2
Cco05g0576 . 25 365 Leucine-rich Repeat extension Gene Families AT3G24480 64.3 1.2e-53 208.0
Cco07g0244 . 46 376 Leucine-rich Repeat extension Gene Families AT3G24480 60.5 5.8e-45 179.1
Cco06g0355 . 25 404 Leucine-rich Repeat extension Gene Families AT3G24480 50.8 1.9e-40 164.1
Cco06g0357 . 25 393 Leucine-rich Repeat extension Gene Families AT3G24480 50.7 5.6e-40 162.5
Cco06g0356 . 25 393 Leucine-rich Repeat extension Gene Families AT3G24480 50.7 9.5e-40 161.8
Cco06g0358 . 34 225 Leucine-rich Repeat extension Gene Families AT3G24480 52.3 1.1e-38 158.3
Cco05g0576 . 15 364 Leucine-rich Repeat extension Gene Families AT3G22800 71.9 1.4e-72 270.8
Cco07g0244 . 39 375 Leucine-rich Repeat extension Gene Families AT3G22800 64.2 3.9e-51 199.5
Cco06g1179 . 71 399 Leucine-rich Repeat extension Gene Families AT3G22800 62.5 8.5e-38 155.2
Cco11g0272 . 84 417 Leucine-rich Repeat extension Gene Families AT3G22800 62.5 2.7e-36 150.2
Cco06g1179 . 45 403 Leucine-rich Repeat extension Gene Families AT5G25550 61.2 8.3e-40 161.8
Cco11g0272 . 58 417 Leucine-rich Repeat extension Gene Families AT5G25550 62.4 1.6e-38 157.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012968 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 28