Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0249 ATGACCACCGGAAGGGAAATTCTCCACAAGATGAAGGTGAAGGCAGGGTTTTGTTCATCAGCAGCTGATACAGGGAAAGGCAAAGGCAAATTGACGACAAATAATAATAATAATAATAAGAATAAGAATATAAGCCATGGGAGTTATTTGGTGAAGGGAAAAGGCAACCATCCAATGGAAGATTACTTGGTTTCCGATTTCAAGCGAGTCAAAGAACATGATTTGGGTTTGTTTGCCATTTTCGATGGCCATTTGGGCCACGATGTTGCTAATTTCTTGCAAAATAATCTATTTCATAACATCCTCAAAGAGGCTGATTTCTGGAGCGAAACAAGAAAAGCCATAAAAAGAGCTTACAAGAAAACAGACGAAGAAATATTGGATAAAGTGAAGCAACTTGGAAAAGGAGGATCAACGGCCGTAACCGCGATCTTGATCGACGGCCACAAACTTGTGGTTGCCAACGTCGGAGATTCTAGAGCTGTTTTGTGCAGAAACGGCGTCGCCGAACAACTTTCCGTTGACCACGAACCCACCAAAGAGAAAAGAGAAATTGAAAGCCGTGGTGGTTTTGTATCAAATATTCCAGGAGATGTTCCACGAGTCGACGGACAATTGGCGGTGGCCAGAGCATTTGGAGATAAGAGCTTAAAAGTCCACCTCAGCTCAGAACCTGACGTGGAAGTCAAAACGGTGGACGAAACTACAGAGTTCATGATTTTGGCTAGCGATGGCATATGGAAGGTGATGACAAACCAAGAAGCAGTAGAATCAATTAGACATATAAAGGATGCGAACATAGCGGCCAAACGACTTATCGACGAAGCAGTGTCTAGAAAAAGCAAGGACGACATATCGTGCATTGTTGTTAGGTTTCAATGA 882 42.74 MTTGREILHKMKVKAGFCSSAADTGKGKGKLTTNNNNNNKNKNISHGSYLVKGKGNHPMEDYLVSDFKRVKEHDLGLFAIFDGHLGHDVANFLQNNLFHNILKEADFWSETRKAIKRAYKKTDEEILDKVKQLGKGGSTAVTAILIDGHKLVVANVGDSRAVLCRNGVAEQLSVDHEPTKEKREIESRGGFVSNIPGDVPRVDGQLAVARAFGDKSLKVHLSSEPDVEVKTVDETTEFMILASDGIWKVMTNQEAVESIRHIKDANIAAKRLIDEAVSRKSKDDISCIVVRFQ 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2544210 2547370 + CcPI632755_07g002490.1 Cco07g0249 182902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0249 293 SMART PP2C_SIG_2 50 292 IPR001932 -
Cco07g0249 293 FunFam Probable protein phosphatase 2C 39 36 293 - -
Cco07g0249 293 SMART PP2C_4 35 290 IPR001932 -
Cco07g0249 293 ProSiteProfiles PPM-type phosphatase domain profile. 45 292 IPR001932 -
Cco07g0249 293 CDD PP2Cc 44 292 IPR001932 -
Cco07g0249 293 PANTHER PROTEIN PHOSPHATASE 40 290 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cco07g0249 293 MobiDBLite consensus disorder prediction 24 45 - -
Cco07g0249 293 MobiDBLite consensus disorder prediction 26 45 - -
Cco07g0249 293 Pfam Protein phosphatase 2C 57 285 IPR001932 -
Cco07g0249 293 Gene3D - 28 293 IPR036457 -
Cco07g0249 293 SUPERFAMILY PP2C-like 39 292 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0249 Cco-Chr7:2544210 Cco11g1461 Cco-Chr11:27421448 1.60E-87 dispersed
Cco02g1842 Cco-Chr2:31351442 Cco07g0249 Cco-Chr7:2544210 1.90E-32 transposed
Cco03g0065 Cco-Chr3:645667 Cco07g0249 Cco-Chr7:2544210 2.40E-38 transposed
Cco04g2310 Cco-Chr4:36628561 Cco07g0249 Cco-Chr7:2544210 4.30E-86 transposed
Cco06g0742 Cco-Chr6:8462893 Cco07g0249 Cco-Chr7:2544210 1.00E-27 transposed
Cco08g0776 Cco-Chr8:19538892 Cco07g0249 Cco-Chr7:2544210 5.90E-46 transposed
Cco08g1940 Cco-Chr8:30281804 Cco07g0249 Cco-Chr7:2544210 1.50E-31 transposed
Cco11g0828 Cco-Chr11:9919661 Cco07g0249 Cco-Chr7:2544210 3.30E-30 transposed
Cco11g1844 Cco-Chr11:31126697 Cco07g0249 Cco-Chr7:2544210 1.90E-101 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0249 K17506 - csv:101211399 497.278