Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0250 ATGAGCAGCGTTTGTGCGGAGCAACAGAAATTTCAATTTCCGTCTTCTGCTTCTGCTGCTTCTTCTTCGTGTTCTTCGTGTTTTCTTAAGGATATTAACGTTCCGCCGAGGAAGCTTGTTGCTGCGGTGAGACGAGAAAACGGTGAAATGTGTTCTGATTCGCCGCGGTTTTCGTTTGCTGTTGAATCTCTTTTGCAGAAATTTTTGCCGTTTAATGGCGAGGATGAAGCGGAGGAGGATGGAGATCCGTATTCGTCAGATCATTTCCGGATGTATGAGTTTAAGGTGAGGCGGTGTACTCGTAGTCGGAGTCATGATTGGACGGATTGTCCGTTTGCTCATCCGGGAGAGAAGGCACGGAGGCGAGATCCTCGTCGGTTTCATTACTCTGGCACGATGTGTCCGGAGTTTCGTCGCGGCGGTTGTGGCCGTGGTGATGGATGTGAGTTCGCTCATGGAGTTTTTGAATGTTGGCTTCATCCCGCGAGGTATCGTACTGAAGCTTGTAAAGATGGAAAAAATTGTAAGAGGAAGGTTTGTTTCTTTGCTCATTCGCCTCGTGAGCTTCGTCTTTTGCCTCCTGTGAGTAATTTTCAAGGCGGCTCTTGTTCTTCACCGAATAAGAGAAATTCTGGTCTTAGATCGGCCACTTCCGGTTCTAATCACTGCTGTTTGTTTTGTCATTGCGGTGGAGCCGCCACTTCCTCACCGACTTCAACGCTTTTCGGAATGTCTCATCTGTCTCCGCCACACTCTCCGCCGCTCTCGCCGGGAAAACCTCGGTCATCGATTAATGGATTTTCACCGATTTCGAGGTACAATCCTGATCAGTCTAAGTTAAATGGAGTTTTGAGCTATAAAGATGCACTGACTGAGCTGATGAGCTCAATTGAATCCATGAATATCGACGACGCCAATGCCACTTTAGCCGCCGCCGCCGCCGCCGCCGCCACTCCAAGACAGACGATTCCTTGGATCGATGTTTCATCTCTCAACTCTGAAGATCAACTGCAGTTTGTTCTCTCACCTTCTACTCCAAACGTGTCCGTTGAGAACAAAGGTAACCCCGACAATGGATGGGCCTCCTCCTCCGATCCGGATCTTGGATGGGTTAATGATCTGCTGATGTAA 1131 48.81 MSSVCAEQQKFQFPSSASAASSSCSSCFLKDINVPPRKLVAAVRRENGEMCSDSPRFSFAVESLLQKFLPFNGEDEAEEDGDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTMCPEFRRGGCGRGDGCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHSPRELRLLPPVSNFQGGSCSSPNKRNSGLRSATSGSNHCCLFCHCGGAATSSPTSTLFGMSHLSPPHSPPLSPGKPRSSINGFSPISRYNPDQSKLNGVLSYKDALTELMSSIESMNIDDANATLAAAAAAAATPRQTIPWIDVSSLNSEDQLQFVLSPSTPNVSVENKGNPDNGWASSSDPDLGWVNDLLM 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2552897 2554027 + CcPI632755_07g002500.1 Cco07g0250 182903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0250 376 ProSiteProfiles Zinc finger C3H1-type profile. 129 155 IPR000571 GO:0046872(InterPro)
Cco07g0250 376 MobiDBLite consensus disorder prediction 258 273 - -
Cco07g0250 376 PANTHER UNKEMPT FAMILY MEMBER 49 321 IPR045234 -
Cco07g0250 376 Gene3D - 128 191 - -
Cco07g0250 376 MobiDBLite consensus disorder prediction 344 362 - -
Cco07g0250 376 SMART c3hfinal6 163 186 IPR000571 GO:0046872(InterPro)
Cco07g0250 376 SMART c3hfinal6 128 154 IPR000571 GO:0046872(InterPro)
Cco07g0250 376 MobiDBLite consensus disorder prediction 344 365 - -
Cco07g0250 376 FunFam Zinc finger CCCH domain-containing protein 66 86 154 - -
Cco07g0250 376 MobiDBLite consensus disorder prediction 243 273 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0250 Cco-Chr7:2552897 Cco11g0213 Cco-Chr11:2060806 3.80E-57 dispersed
Cco07g0250 Cco-Chr7:2552897 Cco03g1644 Cco-Chr3:31120749 1.70E-57 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59597 None None None None Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0250 K23047 - csv:101211149 607.446