Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco07g0250 | ATGAGCAGCGTTTGTGCGGAGCAACAGAAATTTCAATTTCCGTCTTCTGCTTCTGCTGCTTCTTCTTCGTGTTCTTCGTGTTTTCTTAAGGATATTAACGTTCCGCCGAGGAAGCTTGTTGCTGCGGTGAGACGAGAAAACGGTGAAATGTGTTCTGATTCGCCGCGGTTTTCGTTTGCTGTTGAATCTCTTTTGCAGAAATTTTTGCCGTTTAATGGCGAGGATGAAGCGGAGGAGGATGGAGATCCGTATTCGTCAGATCATTTCCGGATGTATGAGTTTAAGGTGAGGCGGTGTACTCGTAGTCGGAGTCATGATTGGACGGATTGTCCGTTTGCTCATCCGGGAGAGAAGGCACGGAGGCGAGATCCTCGTCGGTTTCATTACTCTGGCACGATGTGTCCGGAGTTTCGTCGCGGCGGTTGTGGCCGTGGTGATGGATGTGAGTTCGCTCATGGAGTTTTTGAATGTTGGCTTCATCCCGCGAGGTATCGTACTGAAGCTTGTAAAGATGGAAAAAATTGTAAGAGGAAGGTTTGTTTCTTTGCTCATTCGCCTCGTGAGCTTCGTCTTTTGCCTCCTGTGAGTAATTTTCAAGGCGGCTCTTGTTCTTCACCGAATAAGAGAAATTCTGGTCTTAGATCGGCCACTTCCGGTTCTAATCACTGCTGTTTGTTTTGTCATTGCGGTGGAGCCGCCACTTCCTCACCGACTTCAACGCTTTTCGGAATGTCTCATCTGTCTCCGCCACACTCTCCGCCGCTCTCGCCGGGAAAACCTCGGTCATCGATTAATGGATTTTCACCGATTTCGAGGTACAATCCTGATCAGTCTAAGTTAAATGGAGTTTTGAGCTATAAAGATGCACTGACTGAGCTGATGAGCTCAATTGAATCCATGAATATCGACGACGCCAATGCCACTTTAGCCGCCGCCGCCGCCGCCGCCGCCACTCCAAGACAGACGATTCCTTGGATCGATGTTTCATCTCTCAACTCTGAAGATCAACTGCAGTTTGTTCTCTCACCTTCTACTCCAAACGTGTCCGTTGAGAACAAAGGTAACCCCGACAATGGATGGGCCTCCTCCTCCGATCCGGATCTTGGATGGGTTAATGATCTGCTGATGTAA | 1131 | 48.81 | MSSVCAEQQKFQFPSSASAASSSCSSCFLKDINVPPRKLVAAVRRENGEMCSDSPRFSFAVESLLQKFLPFNGEDEAEEDGDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTMCPEFRRGGCGRGDGCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHSPRELRLLPPVSNFQGGSCSSPNKRNSGLRSATSGSNHCCLFCHCGGAATSSPTSTLFGMSHLSPPHSPPLSPGKPRSSINGFSPISRYNPDQSKLNGVLSYKDALTELMSSIESMNIDDANATLAAAAAAAATPRQTIPWIDVSSLNSEDQLQFVLSPSTPNVSVENKGNPDNGWASSSDPDLGWVNDLLM | 376 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 2552897 | 2554027 | + | CcPI632755_07g002500.1 | Cco07g0250 | 182903 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco07g0250 | 376 | ProSiteProfiles | Zinc finger C3H1-type profile. | 129 | 155 | IPR000571 | GO:0046872(InterPro) | |
Cco07g0250 | 376 | MobiDBLite | consensus disorder prediction | 258 | 273 | - | - | |
Cco07g0250 | 376 | PANTHER | UNKEMPT FAMILY MEMBER | 49 | 321 | IPR045234 | - | |
Cco07g0250 | 376 | Gene3D | - | 128 | 191 | - | - | |
Cco07g0250 | 376 | MobiDBLite | consensus disorder prediction | 344 | 362 | - | - | |
Cco07g0250 | 376 | SMART | c3hfinal6 | 163 | 186 | IPR000571 | GO:0046872(InterPro) | |
Cco07g0250 | 376 | SMART | c3hfinal6 | 128 | 154 | IPR000571 | GO:0046872(InterPro) | |
Cco07g0250 | 376 | MobiDBLite | consensus disorder prediction | 344 | 365 | - | - | |
Cco07g0250 | 376 | FunFam | Zinc finger CCCH domain-containing protein 66 | 86 | 154 | - | - | |
Cco07g0250 | 376 | MobiDBLite | consensus disorder prediction | 243 | 273 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco07g0250 | Cco-Chr7:2552897 | Cco11g0213 | Cco-Chr11:2060806 | 3.80E-57 | dispersed | |
Cco07g0250 | Cco-Chr7:2552897 | Cco03g1644 | Cco-Chr3:31120749 | 1.70E-57 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59597 | None | None | None | None | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco07g0250 | K23047 | - | csv:101211149 | 607.446 |