Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0256 ATGATTTCAAGATCTTACACAAATCTTTTAGATTTGGCTTCTGGAAATTTTCCAGCAATGGAAGTGAAAAGGAAGCGATTTCCGCGAGTCATGACTGTTCCGGATCGGATGATAATTGTAGCAAACCAGCTACCTTTAAGAGCAAAGCGAAGGGAGGATGATAATTCGTGGAGTTTCAGTTGGAATGAAGATTCGTTGCTTTTGCAGCTTAAAGATGGCTTACCCGAAGATATGGAGGTTCTTTACGTTGGTTCGCTGAAAGTCGATATCCAACCAGAAGAGCAAGATGAGGTCTCCCAGATTTTGTTGGAGAAATTTAGGTGTATTCCTACATTTTTGCCTCCTCATATTTTGGAAAAGTTTTATGATGGTTTCTGCAAGAGGCATTTGTGGCCTCTTTTTCATTATATGCTGCCATATTCTGCTGATCAGAAGGGTCGATTCGATCGCTCCATGTGGGAAGCCTATGTATCAGCAAATAAGTTATTTTTCCAGAAAGTAGTTGAGGTCATCAACCCAGATGATGACTATATCTGGATCCATGATTACCATTTGATGGTATTGCCCACTTTCTTGAGGAGGCGTTTTAACAGAGTTAAAATGGGATTTTTCCTTCATAGTCCATTTCCTTCATCTGAGATCTACCGTACCCTTCCTGTCAGAGAAGAGATTCTCAAGGCCTTACTGAACTCTGATATCATTGGATTTCACACTTTCGATTATGCTCGTCATTTCCTTTCTTGTTGTAGCCGAATGTTGGGTTTGGAATACCAGTCAAAAAGGGGATATCTTGGATTGGAATACTATGGCAGGACGATTGGGATAAAGATAATGCCTGTTGGTATTCATATGAGTCGGATTGAATCGGTGATGAAACTGGCAGATGAGGATGCTAAGACGAGGGAACTCACACAACAATTTGCAGGGAAAACAGTGTTGCTTGGTGTCGATGATTTGGACATTTTCAAAGGTATCAACTTGAAATTGTTAGCTATGGAACAGGTACTAAAGCAACATCCGAAGTGGCAGGGAAAGGCTGTACTCATCCAAATTGTAAATCCTGCCAGAGGCAAGGGAAGAGATCTACAAGAAATAGAAGATGAAATAAAAGAAAGCTGCAGAAGGATCAACAAGGAGTATGGGCATCCTGGTTACGAGCCAATAGTACTTCTCAACAGGCACGTGCCAATTACTGAAAGGGTTGCTTATTATAGCATTGCTGAGTGTGTAGCTGTCACTGCTGTTAGAGATGGCATGAACCTAACTCCTTATGAGTACGTTGTCTGTAGACAGGGAATATCCACCTCCCAAAAATGTTTAAACTTCAGCGGACCAAAAAAGAGCATGCTCGTCATATCCGAATTTATTGGATGTTCTCCATCACTGAGTGGAGCATTTCGTGTCAACCCATGGAATGTTGAAAGGACAGCAGAGGCTCTGAATGAAGCAATCTCAATGTCTGATTCAGAGAAGCAGCTGCGACATGAGAAGCATTATCGTTATGTTGCTACACACGATGTGGCTTACTGGTCTCGTAGTTTCTTGCAAGATATGGAGAGAACTTGCTCAGATCATTTCAGGAGACGATGTTGGGGAATAGGTTTTAGTTTTGGATTCAGGGTTGTAGCTCTTGATCCCAATTTCAGAAAACTTTCAGTAGATGCCATTGTATCATCTTACAGTAGGGCCGAAAGTCGGGCTATTCTGTTGGACTATGATGGCACTGTGATGCCTCAAAACTCCATAAATAAGTCCCCGAGTGAGCAGGTTATCTCTATCCTTAACACCCTTTGTGCAGATGCAAAAAATGTGGTCTTCATTGTGAGTGGACGAGGGAGGGACAGCTTAAGCAAGTGGTTTCGCCCATGCAAGAAGCTTGGAATTGCAGCAGAACATGGATATTTTCTGAGGCAGTCGCAAAATGAGGAGTGGAAGATCTGCAGCCAAAGTTCTGATTTTGGATGGATGCAGATTGCCGAACCTGTTATGAAATTGTATACCGAGGCTACAGATGGTTCTTCTATTGAAAGAAAGGAAAGTGCTTTGGTTTGGCAGTATCGAGATGCAGATCCTGGTTTCGGATCATCCCAGGCAAAGGAAATGTTGGATCATTTAGAGAGTGTTTTGGCAAACGAACCTGTAGCAGTCAAAAGTGGCCAGTTTATCGTAGAAGTGAAACCACAGGGGGTTACCAAAGGGCTAGTGGCTGAAAAGATCTTTTCATCAATGGCGGAGGATGGAAAGCTTGCTGACTTTGTGTTGTGCATCGGTGACGACAGATCTGATGAGGACATGTTTGAAATAATTGGTAATGCGTTGTCCAGTAACATTCTTTCTCCAACGACATCGGTTTTTGCCTGCACTGTTGGACAGAAGCCAAGCAAAGCCAAATATTATTTAGATGACACAGCTGAAGTAATAAGTATGCTTGAATACCTGGCTGAAGCGTCTAGCCCATTGCCATCCTCGGACGATGAAGAAGGTGAAAATGCTTCTTGA 2499 42.54 MISRSYTNLLDLASGNFPAMEVKRKRFPRVMTVPDRMIIVANQLPLRAKRREDDNSWSFSWNEDSLLLQLKDGLPEDMEVLYVGSLKVDIQPEEQDEVSQILLEKFRCIPTFLPPHILEKFYDGFCKRHLWPLFHYMLPYSADQKGRFDRSMWEAYVSANKLFFQKVVEVINPDDDYIWIHDYHLMVLPTFLRRRFNRVKMGFFLHSPFPSSEIYRTLPVREEILKALLNSDIIGFHTFDYARHFLSCCSRMLGLEYQSKRGYLGLEYYGRTIGIKIMPVGIHMSRIESVMKLADEDAKTRELTQQFAGKTVLLGVDDLDIFKGINLKLLAMEQVLKQHPKWQGKAVLIQIVNPARGKGRDLQEIEDEIKESCRRINKEYGHPGYEPIVLLNRHVPITERVAYYSIAECVAVTAVRDGMNLTPYEYVVCRQGISTSQKCLNFSGPKKSMLVISEFIGCSPSLSGAFRVNPWNVERTAEALNEAISMSDSEKQLRHEKHYRYVATHDVAYWSRSFLQDMERTCSDHFRRRCWGIGFSFGFRVVALDPNFRKLSVDAIVSSYSRAESRAILLDYDGTVMPQNSINKSPSEQVISILNTLCADAKNVVFIVSGRGRDSLSKWFRPCKKLGIAAEHGYFLRQSQNEEWKICSQSSDFGWMQIAEPVMKLYTEATDGSSIERKESALVWQYRDADPGFGSSQAKEMLDHLESVLANEPVAVKSGQFIVEVKPQGVTKGLVAEKIFSSMAEDGKLADFVLCIGDDRSDEDMFEIIGNALSSNILSPTTSVFACTVGQKPSKAKYYLDDTAEVISMLEYLAEASSPLPSSDDEEGENAS 832
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2609373 2612585 - CcPI632755_07g002560.1 Cco07g0256 182909

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0256 832 NCBIfam HAD-IIB family hydrolase 568 772 IPR006379 -
Cco07g0256 832 FunFam Alpha,alpha-trehalose-phosphate synthase 290 503 - -
Cco07g0256 832 NCBIfam trehalose-phosphatase 564 814 IPR003337 GO:0005992(InterPro)
Cco07g0256 832 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 565 682 - -
Cco07g0256 832 CDD GT20_TPS 36 519 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Cco07g0256 832 CDD HAD_TPP 567 806 - -
Cco07g0256 832 Gene3D Glycogen Phosphorylase B; 30 289 - -
Cco07g0256 832 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 695 826 - -
Cco07g0256 832 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 33 816 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Cco07g0256 832 SUPERFAMILY HAD-like 566 814 IPR036412 -
Cco07g0256 832 FunFam Trehalose-6-phosphate synthase 2 649 728 - -
Cco07g0256 832 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 29 288 - -
Cco07g0256 832 Pfam Glycosyltransferase family 20 36 519 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Cco07g0256 832 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 36 522 - -
Cco07g0256 832 Gene3D Glycogen Phosphorylase B; 290 503 - -
Cco07g0256 832 Pfam Trehalose-phosphatase 569 803 IPR003337 GO:0005992(InterPro)
Cco07g0256 832 Gene3D - 565 666 IPR023214 -
Cco07g0256 832 Gene3D - 694 826 IPR023214 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0256 K16055 - - csv:101209914 1651.34
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0256 Cco-Chr7:2609373 Cco10g0149 Cco-Chr10:1434337 0.00E+00 dispersed
Cco03g0723 Cco-Chr3:7437906 Cco07g0256 Cco-Chr7:2609373 4.40E-121 wgd
Cco04g2173 Cco-Chr4:35466802 Cco07g0256 Cco-Chr7:2609373 0.00E+00 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco01g0191 . 21 575 Trehalose Biosynthesis Gene Families AT4G24040 58.0 1.5e-194 676.4
Cco07g0256 . 1 817 Trehalose Biosynthesis Gene Families AT1G06410 76.0 0.0e+00 1327.0
Cco04g2173 . 1 826 Trehalose Biosynthesis Gene Families AT1G06410 75.4 0.0e+00 1322.4
Cco10g0149 . 1 844 Trehalose Biosynthesis Gene Families AT1G06410 66.4 0.0e+00 1151.7
Cco05g2787 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 62.9 0.0e+00 1093.2
Cco06g1891 . 1 837 Trehalose Biosynthesis Gene Families AT1G06410 59.5 4.4e-303 1037.3
Cco11g1775 . 85 696 Trehalose Biosynthesis Gene Families AT1G16980 66.4 1.7e-249 859.0
Cco03g0723 . 95 703 Trehalose Biosynthesis Gene Families AT1G16980 64.6 5.8e-242 833.9
Cco05g2787 . 1 859 Trehalose Biosynthesis Gene Families AT1G23870 74.6 0.0e+00 1348.2
Cco06g1891 . 1 855 Trehalose Biosynthesis Gene Families AT1G23870 66.2 0.0e+00 1212.2
Cco10g0149 . 1 843 Trehalose Biosynthesis Gene Families AT1G23870 62.5 0.0e+00 1106.3
Cco04g2173 . 5 827 Trehalose Biosynthesis Gene Families AT1G23870 62.1 0.0e+00 1093.2
Cco07g0256 . 1 818 Trehalose Biosynthesis Gene Families AT1G23870 59.8 8.2e-314 1072.8
Cco05g2787 . 1 859 Trehalose Biosynthesis Gene Families AT1G60140 73.3 0.0e+00 1330.1
Cco06g1891 . 1 855 Trehalose Biosynthesis Gene Families AT1G60140 68.2 0.0e+00 1234.6
Cco10g0149 . 1 848 Trehalose Biosynthesis Gene Families AT1G60140 60.1 0.0e+00 1078.9
Cco04g2173 . 6 831 Trehalose Biosynthesis Gene Families AT1G60140 61.1 4.0e-312 1067.4
Cco07g0256 . 1 821 Trehalose Biosynthesis Gene Families AT1G60140 59.6 1.0e-307 1052.7
Cco10g0149 . 1 847 Trehalose Biosynthesis Gene Families AT1G68020 72.0 0.0e+00 1271.9
Cco04g2173 . 2 827 Trehalose Biosynthesis Gene Families AT1G68020 64.6 0.0e+00 1144.4
Cco07g0256 . 1 820 Trehalose Biosynthesis Gene Families AT1G68020 63.0 0.0e+00 1128.2
Cco05g2787 . 1 840 Trehalose Biosynthesis Gene Families AT1G68020 63.6 0.0e+00 1109.4
Cco06g1891 . 1 835 Trehalose Biosynthesis Gene Families AT1G68020 62.6 0.0e+00 1094.3
Cco05g2787 . 1 859 Trehalose Biosynthesis Gene Families AT1G70290 68.1 0.0e+00 1194.9
Cco06g1891 . 1 852 Trehalose Biosynthesis Gene Families AT1G70290 63.3 0.0e+00 1103.6
Cco04g2173 . 6 830 Trehalose Biosynthesis Gene Families AT1G70290 57.9 3.2e-290 994.6
Cco07g0256 . 1 827 Trehalose Biosynthesis Gene Families AT1G70290 56.9 2.1e-286 981.9
Cco10g0149 . 1 853 Trehalose Biosynthesis Gene Families AT1G70290 56.8 1.8e-285 978.8
Cco11g1775 . 1 921 Trehalose Biosynthesis Gene Families AT1G78580 79.6 0.0e+00 1483.4
Cco03g0723 . 10 939 Trehalose Biosynthesis Gene Families AT1G78580 73.5 0.0e+00 1362.8
Cco05g2787 . 33 842 Trehalose Biosynthesis Gene Families AT2G18700 61.2 4.6e-308 1053.9
Cco06g1891 . 10 837 Trehalose Biosynthesis Gene Families AT2G18700 60.1 1.6e-300 1028.9
Cco10g0149 . 1 844 Trehalose Biosynthesis Gene Families AT2G18700 58.6 1.5e-298 1022.3
Cco04g2173 . 1 823 Trehalose Biosynthesis Gene Families AT2G18700 59.7 2.5e-298 1021.5
Cco07g0256 . 31 817 Trehalose Biosynthesis Gene Families AT2G18700 60.2 2.1e-292 1001.9
Cco10g0149 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 79.6 0.0e+00 1378.6
Cco04g2173 . 3 819 Trehalose Biosynthesis Gene Families AT4G17770 67.2 0.0e+00 1162.1
Cco05g2787 . 1 842 Trehalose Biosynthesis Gene Families AT4G17770 63.7 0.0e+00 1136.3
Cco07g0256 . 1 825 Trehalose Biosynthesis Gene Families AT4G17770 61.9 0.0e+00 1127.5
Cco06g1891 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 62.5 0.0e+00 1108.2
Cco11g1775 . 93 925 Trehalose Biosynthesis Gene Families AT4G27550 62.7 1.1e-305 1045.8
Cco03g0723 . 99 940 Trehalose Biosynthesis Gene Families AT4G27550 59.2 2.2e-288 988.4
Cco11g1775 . 1 921 Trehalose Biosynthesis Gene Families AT1G78580 79.6 0.0e+00 1483.4
Cco03g0723 . 10 939 Trehalose Biosynthesis Gene Families AT1G78580 73.5 0.0e+00 1362.8
Cco11g1775 . 85 696 Trehalose Biosynthesis Gene Families AT1G16980 66.4 1.7e-249 859.0
Cco03g0723 . 95 703 Trehalose Biosynthesis Gene Families AT1G16980 64.6 5.8e-242 833.9
Cco11g1775 . 83 621 Trehalose Biosynthesis Gene Families AT1G17000 62.3 2.4e-194 676.0
Cco03g0723 . 100 618 Trehalose Biosynthesis Gene Families AT1G17000 61.5 2.7e-190 662.5
Cco11g1775 . 93 925 Trehalose Biosynthesis Gene Families AT4G27550 62.7 1.1e-305 1045.8
Cco03g0723 . 99 940 Trehalose Biosynthesis Gene Families AT4G27550 59.2 2.2e-288 988.4
Cco10g0149 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 79.6 0.0e+00 1378.6
Cco04g2173 . 3 819 Trehalose Biosynthesis Gene Families AT4G17770 67.2 0.0e+00 1162.1
Cco05g2787 . 1 842 Trehalose Biosynthesis Gene Families AT4G17770 63.7 0.0e+00 1136.3
Cco07g0256 . 1 825 Trehalose Biosynthesis Gene Families AT4G17770 61.9 0.0e+00 1127.5
Cco06g1891 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 62.5 0.0e+00 1108.2
Cco10g0149 . 1 847 Trehalose Biosynthesis Gene Families AT1G68020 72.0 0.0e+00 1271.9
Cco04g2173 . 2 827 Trehalose Biosynthesis Gene Families AT1G68020 64.6 0.0e+00 1144.4
Cco07g0256 . 1 820 Trehalose Biosynthesis Gene Families AT1G68020 63.0 0.0e+00 1128.2
Cco05g2787 . 1 840 Trehalose Biosynthesis Gene Families AT1G68020 63.6 0.0e+00 1109.4
Cco06g1891 . 1 835 Trehalose Biosynthesis Gene Families AT1G68020 62.6 0.0e+00 1094.3
Cco07g0256 . 1 817 Trehalose Biosynthesis Gene Families AT1G06410 76.0 0.0e+00 1327.0
Cco04g2173 . 1 826 Trehalose Biosynthesis Gene Families AT1G06410 75.4 0.0e+00 1322.4
Cco10g0149 . 1 844 Trehalose Biosynthesis Gene Families AT1G06410 66.4 0.0e+00 1151.7
Cco05g2787 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 62.9 0.0e+00 1093.2
Cco06g1891 . 1 837 Trehalose Biosynthesis Gene Families AT1G06410 59.5 4.4e-303 1037.3
Cco05g2787 . 1 859 Trehalose Biosynthesis Gene Families AT1G70290 68.1 0.0e+00 1194.9
Cco06g1891 . 1 852 Trehalose Biosynthesis Gene Families AT1G70290 63.3 0.0e+00 1103.6
Cco04g2173 . 6 830 Trehalose Biosynthesis Gene Families AT1G70290 57.9 3.2e-290 994.6
Cco07g0256 . 1 827 Trehalose Biosynthesis Gene Families AT1G70290 56.9 2.1e-286 981.9
Cco10g0149 . 1 853 Trehalose Biosynthesis Gene Families AT1G70290 56.8 1.8e-285 978.8
Cco05g2787 . 1 859 Trehalose Biosynthesis Gene Families AT1G23870 74.6 0.0e+00 1348.2
Cco06g1891 . 1 855 Trehalose Biosynthesis Gene Families AT1G23870 66.2 0.0e+00 1212.2
Cco10g0149 . 1 843 Trehalose Biosynthesis Gene Families AT1G23870 62.5 0.0e+00 1106.3
Cco04g2173 . 5 827 Trehalose Biosynthesis Gene Families AT1G23870 62.1 0.0e+00 1093.2
Cco07g0256 . 1 818 Trehalose Biosynthesis Gene Families AT1G23870 59.8 8.2e-314 1072.8
Cco05g2787 . 1 859 Trehalose Biosynthesis Gene Families AT1G60140 73.3 0.0e+00 1330.1
Cco06g1891 . 1 855 Trehalose Biosynthesis Gene Families AT1G60140 68.2 0.0e+00 1234.6
Cco10g0149 . 1 848 Trehalose Biosynthesis Gene Families AT1G60140 60.1 0.0e+00 1078.9
Cco04g2173 . 6 831 Trehalose Biosynthesis Gene Families AT1G60140 61.1 4.0e-312 1067.4
Cco07g0256 . 1 821 Trehalose Biosynthesis Gene Families AT1G60140 59.6 1.0e-307 1052.7
Cco05g2787 . 33 842 Trehalose Biosynthesis Gene Families AT2G18700 61.2 4.6e-308 1053.9
Cco06g1891 . 10 837 Trehalose Biosynthesis Gene Families AT2G18700 60.1 1.6e-300 1028.9
Cco10g0149 . 1 844 Trehalose Biosynthesis Gene Families AT2G18700 58.6 1.5e-298 1022.3
Cco04g2173 . 1 823 Trehalose Biosynthesis Gene Families AT2G18700 59.7 2.5e-298 1021.5
Cco07g0256 . 31 817 Trehalose Biosynthesis Gene Families AT2G18700 60.2 2.1e-292 1001.9
Cco01g0191 . 21 575 Trehalose Biosynthesis Gene Families AT4G24040 58.0 1.5e-194 676.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001233 1 5 3 3 2 2 0 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 3 2 3 3 73