Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco07g0258 | ATGGACCGCCGTGTTCGTACAAACCCATTTGTCTCCGAGCAAGAAGATCCTGAAGCCACGTCGGACGACGGCTCACCGGAATCACCCTCCGACGGCAATGACTCAAAATCCGCCTCCGCCGGCCCACCTCCCAAAAAGAGTAGAAGGGGAGTGCAGAAGAGAGTGGTGTCCGTACCGATCGGTGACGTAGAAGGATCTAAGAGCAAAGGGGAAGCATATCCACCGTCCGATCCATGGGCATGGAGGAAATACGGCCAAAAGCCAATCAAAGGCTCTCCTTATCCCAGGGGATATTATCGATGTAGTAGCTCCAAGGGCTGCCCAGCAAGAAAGCAAGTGGAAAGAAGCCGTGTGGACCCCACCAAGCTCGTTATTACCTACGCTTTCGACCACAATCACCAACTCCCGGCCACCAAATCTCACCACCACCACCACAATTCCTCCCCATCCTCCGCCGCGATCGCCGCCGCATCCACCGCAGCCGACTCTTCGTCCCCGGGGAGCACTACGACATCGTCCTCCACTTCCTCCGGCGATAACACGAACGCCGCTCCATCGTCGCCGGCAGCGGCAGCGAAGTTCGAGGAGGCGGCTGCGGTTTTCGCAAGTCAGCCGGAACTGGAACTCGGCGGCGACTCGCTGATGATAAAACCATGCATCGGCGATTTCGGATGGTTGGCTGACGTGGCGTACGACAGAATCCTGGAGGGCCCGATTTGCGGGGTGGGCGACATATTGGACGACGCCGATGTAATGGTTTTGTCCACAACAGGTGATGACGAGGAGGAGTCGTTATTTGCGGATCTTGGGGAATTACCCGAAGGCTCTGTTGTTTTCGGCCGACGACGACCGGTCCAACCGGATGGACCAAACCGGACATGTGGCAGAGTTTTAGACTGCTAG | 903 | 57.25 | MDRRVRTNPFVSEQEDPEATSDDGSPESPSDGNDSKSASAGPPPKKSRRGVQKRVVSVPIGDVEGSKSKGEAYPPSDPWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRVDPTKLVITYAFDHNHQLPATKSHHHHHNSSPSSAAIAAASTAADSSSPGSTTTSSSTSSGDNTNAAPSSPAAAAKFEEAAAVFASQPELELGGDSLMIKPCIGDFGWLADVAYDRILEGPICGVGDILDDADVMVLSTTGDDEEESLFADLGELPEGSVVFGRRRPVQPDGPNRTCGRVLDC | 300 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 2622652 | 2624734 | - | CcPI632755_07g002580.1 | Cco07g0258 | 182911 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco07g0258 | 300 | Gene3D | WRKY domain | 63 | 137 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco07g0258 | 300 | ProSiteProfiles | WRKY domain profile. | 76 | 136 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco07g0258 | 300 | MobiDBLite | consensus disorder prediction | 147 | 187 | - | - | |
Cco07g0258 | 300 | MobiDBLite | consensus disorder prediction | 23 | 37 | - | - | |
Cco07g0258 | 300 | Pfam | WRKY DNA -binding domain | 77 | 134 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco07g0258 | 300 | MobiDBLite | consensus disorder prediction | 137 | 189 | - | - | |
Cco07g0258 | 300 | FunFam | WRKY transcription factor 65 | 62 | 136 | - | - | |
Cco07g0258 | 300 | SUPERFAMILY | WRKY DNA-binding domain | 71 | 136 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco07g0258 | 300 | PANTHER | WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED | 24 | 200 | IPR044810 | GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Cco07g0258 | 300 | SMART | WRKY_cls | 75 | 135 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco07g0258 | 300 | MobiDBLite | consensus disorder prediction | 1 | 115 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco07g0068 | Cco-Chr7:661271 | Cco07g0258 | Cco-Chr7:2622652 | 5.50E-23 | dispersed | |
Cco07g0258 | Cco-Chr7:2622652 | Cco10g1135 | Cco-Chr10:23779848 | 1.10E-25 | dispersed | |
Cco03g0703 | Cco-Chr3:7237583 | Cco07g0258 | Cco-Chr7:2622652 | 3.60E-36 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59599 | PF03106 | WRKY | 2.10E-24 | CL0274 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco07g0258 | - | - | - | 0.0 |