Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0265 ATGGCGTCCATTATTATTTCTCGTCTTTTCATTGTTTTTTCCCTTTTAGCCTTCTCAGCCAATGCTCAGCTCTCATCCAGCTTCTACTCAAAAAGCTGTCCCAGACTCCAATCAATTGTTCGTGCTGGTATGACCAAAGCTATTAACAAAGAAAAGCGTATGGGAGCTTCGATCCTTCGCTTGTTCTTCCACGACTGCTTCGTAAATGGTTGCGATGGTTCTATCTTGTTGGATGATACTTCAACATTTACAGGTGAAAAAAATGCATTTCCAAATAGAAACTCAGCTAGAGGTTTCGAAGTAATTGATGACATTAAAACTCAAGTTGAAGCTGCTTGCAATGCCACCGTTTCTTGTGCTGATATTCTTGCTCTTGCCACTCGTGATGGGGTCGTTCTGCTCGGAGGGCCAAATTGGGTTGTACCACTTGGTCGAAGGGACTCAAGGACAGCGAGCGAGAGTGGAGCGAACAGCAACCTTCCAGGACCAGCCTCTGACCTCTCGACACTCATCTCACTATTTGCCGCTCAAGGCCTCAACGCCCGCGACATGACAGCCCTATCGGGCGCTCACACCATAGGCAATGGCCAATGTCGTTTCTTTCGAACTCGCATCTACAACGAAACCAACATCGATCCCACCTTTGCCACCCAGCGGCAAGAAAACTGTCCGTTCAGCGGCGGAGACTCGAACTTGGCCCCTCTTGACTCAACCAATACTATTTTTGACAATAGATATTACGTAGACCTAACTAATAAGCGTGGCCTGTTTCATTCGGACCAACAACTCTTCAACGGCGGTTCACAAGATGCGTTGGTTCGGACCTACAGTAAAAGTCCTGCTGTCTTTAAATCGGATTTTGTAAATGCGATGATCAAGATGGGGAATCTCCGTCCACCAAGTGGAACCCCCGCTGAGATTAGAAAAAATTACTACATTCTCCGTGATTCTGCAATGGACTCTGATAAGGAAATGTCATCGACTACTGTAGAAAGTAAGGACGCAGTAACTGGTCACATAATCTCCACTACTATTGGAGGGAAAAATGGCGAGCAAAAACAGACTATTAGCTACATGGCAGAACGTGTTGTTGGTTCTGGATCGTTTGGAATTGTTTTCCAGGCTAAATGCTTGGAAACCGGGGAGACTTTTGCAATAAAGAAAGTCTTACAGGACAGGCGTTATAAAAATCGTGAGCTACAGTTGATGCGCTTGATGGATCATCCAAATGTTGTTTCCTTGAAGCATTGTTTTTTCTCTACAACTAGTAAAGATGAACTCTTCTTAAATCTGGTAATGGAATACGTTCCCGAGACTATGTATCGAGTACTGAAGCACTACTGCAGTATAAACCAGAGGATGCCACTCATCTATGTGAAACTTTACACTTATCAAATCTTCAGGGGGCTAGCTTATATCCACACTGTTCCTGGAGTTTGTCACCGCGATGTAAAGCCTCATAATCTTTTGGTTGATCCTCTCACACATCAGGTCAAGCTTTGTGATTTTGGTAGTGCAAAAGTCCTGGTTAAAGGTGAAGCAAACATCTCTTACATATGCTCCCGGTACTATCGAGCTCCGGAGCTGATATTTGGTGCAACAGAGTATTCTACATCCATTGACATATGGTCAGCTGGTTGTGTTCTTGCAGAGCTGCTTCTAGGCCAGCCATTGTTCCCTGGTGAAAGTGCCGTAGATCAACTGGTTGAAATTATCAAGGTTCTTGGCACTCCAACTCGAGAAGAAATTCGATGCATGAATCCAAATTATACAGATTTTAGGTTTCCTCAGATTAAAGCCCATCCGTGGCACAAGGTCTTCCACAAACGAATGCCACCTGAAGCTATAGATCTTACTTCAAGGCTTCTTCAATATTCGCCTGGTCTCCGTTGCACTGCACTTGAAGCATGTGCGCATCCTTTCTTTGATGAGCTTCGGGAGCCTAATGCCCGCCTTCCCGATGGTCGTCAGTTGCCCCCACTTTTCAACTTTAAACAGGAACTTTCAGGAGCATCACTTGAACTGATAAAGAGGCTCATACCAGAGCATGTTCGGCGGCAGACCGGACTTTCATTCACCCATCATGCAGTTGCATAG 2097 45.06 MASIIISRLFIVFSLLAFSANAQLSSSFYSKSCPRLQSIVRAGMTKAINKEKRMGASILRLFFHDCFVNGCDGSILLDDTSTFTGEKNAFPNRNSARGFEVIDDIKTQVEAACNATVSCADILALATRDGVVLLGGPNWVVPLGRRDSRTASESGANSNLPGPASDLSTLISLFAAQGLNARDMTALSGAHTIGNGQCRFFRTRIYNETNIDPTFATQRQENCPFSGGDSNLAPLDSTNTIFDNRYYVDLTNKRGLFHSDQQLFNGGSQDALVRTYSKSPAVFKSDFVNAMIKMGNLRPPSGTPAEIRKNYYILRDSAMDSDKEMSSTTVESKDAVTGHIISTTIGGKNGEQKQTISYMAERVVGSGSFGIVFQAKCLETGETFAIKKVLQDRRYKNRELQLMRLMDHPNVVSLKHCFFSTTSKDELFLNLVMEYVPETMYRVLKHYCSINQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPHNLLVDPLTHQVKLCDFGSAKVLVKGEANISYICSRYYRAPELIFGATEYSTSIDIWSAGCVLAELLLGQPLFPGESAVDQLVEIIKVLGTPTREEIRCMNPNYTDFRFPQIKAHPWHKVFHKRMPPEAIDLTSRLLQYSPGLRCTALEACAHPFFDELREPNARLPDGRQLPPLFNFKQELSGASLELIKRLIPEHVRRQTGLSFTHHAVA 698
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 2684768 2694479 - CcPI632755_07g002650.1 Cco07g0265 182918
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0265 698 Pfam Peroxidase 40 278 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco07g0265 698 CDD STKc_GSK3 353 645 IPR039192 -
Cco07g0265 698 SUPERFAMILY Protein kinase-like (PK-like) 357 666 IPR011009 -
Cco07g0265 698 FunFam Glycogen synthase kinase-3 beta 342 437 - -
Cco07g0265 698 ProSiteProfiles Protein kinase domain profile. 358 642 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g0265 698 Gene3D Peroxidase, domain 2 161 294 - -
Cco07g0265 698 SUPERFAMILY Heme-dependent peroxidases 23 311 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco07g0265 698 ProSitePatterns Serine/Threonine protein kinases active-site signature. 479 491 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco07g0265 698 ProSitePatterns Peroxidases proximal heme-ligand signature. 183 193 IPR019793 -
Cco07g0265 698 ProSiteProfiles Plant heme peroxidase family profile. 23 315 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco07g0265 698 FunFam Shaggy-related protein kinase kappa 438 685 - -
Cco07g0265 698 Gene3D Transferase(Phosphotransferase) domain 1 438 685 - -
Cco07g0265 698 ProSitePatterns Peroxidases active site signature. 55 66 IPR019794 GO:0004601(InterPro)
Cco07g0265 698 Gene3D Phosphorylase Kinase; domain 1 343 437 - -
Cco07g0265 698 FunFam Peroxidase 161 294 - -
Cco07g0265 698 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco07g0265 698 PRINTS Haem peroxidase superfamily signature 235 250 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco07g0265 698 PRINTS Haem peroxidase superfamily signature 55 69 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco07g0265 698 PRINTS Haem peroxidase superfamily signature 183 198 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco07g0265 698 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco07g0265 698 PRINTS Plant peroxidase signature 57 77 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco07g0265 698 PRINTS Plant peroxidase signature 289 302 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco07g0265 698 PRINTS Plant peroxidase signature 249 266 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco07g0265 698 PRINTS Plant peroxidase signature 233 248 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco07g0265 698 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco07g0265 698 PRINTS Plant peroxidase signature 182 194 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco07g0265 698 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco07g0265 698 PRINTS Plant peroxidase signature 33 52 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco07g0265 698 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco07g0265 698 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 327 686 IPR050591 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cco07g0265 698 Gene3D - 28 310 - -
Cco07g0265 698 ProSitePatterns Protein kinases ATP-binding region signature. 364 388 IPR017441 GO:0005524(InterPro)
Cco07g0265 698 FunFam Peroxidase 27 166 - -
Cco07g0265 698 Pfam Protein kinase domain 358 642 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g0265 698 SMART serkin_6 358 642 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g0265 698 CDD secretory_peroxidase 23 310 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1669 Cco-Chr1:29440863 Cco07g0265 Cco-Chr7:2684768 1.90E-63 dispersed
Cco04g1496 Cco-Chr4:30367579 Cco07g0265 Cco-Chr7:2684768 7.40E-35 dispersed
Cco07g0265 Cco-Chr7:2684768 Cco10g1392 Cco-Chr10:26983837 3.40E-184 dispersed
Cco02g1914 Cco-Chr2:32026298 Cco07g0265 Cco-Chr7:2684768 1.50E-206 wgd
Cco04g2164 Cco-Chr4:35379808 Cco07g0265 Cco-Chr7:2684768 4.50E-197 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86956 PF00069 Pkinase 4.80E-62 CL0016 Cco PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0265 K14502 - cit:102626148 722.235