Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco07g0265 | ATGGCGTCCATTATTATTTCTCGTCTTTTCATTGTTTTTTCCCTTTTAGCCTTCTCAGCCAATGCTCAGCTCTCATCCAGCTTCTACTCAAAAAGCTGTCCCAGACTCCAATCAATTGTTCGTGCTGGTATGACCAAAGCTATTAACAAAGAAAAGCGTATGGGAGCTTCGATCCTTCGCTTGTTCTTCCACGACTGCTTCGTAAATGGTTGCGATGGTTCTATCTTGTTGGATGATACTTCAACATTTACAGGTGAAAAAAATGCATTTCCAAATAGAAACTCAGCTAGAGGTTTCGAAGTAATTGATGACATTAAAACTCAAGTTGAAGCTGCTTGCAATGCCACCGTTTCTTGTGCTGATATTCTTGCTCTTGCCACTCGTGATGGGGTCGTTCTGCTCGGAGGGCCAAATTGGGTTGTACCACTTGGTCGAAGGGACTCAAGGACAGCGAGCGAGAGTGGAGCGAACAGCAACCTTCCAGGACCAGCCTCTGACCTCTCGACACTCATCTCACTATTTGCCGCTCAAGGCCTCAACGCCCGCGACATGACAGCCCTATCGGGCGCTCACACCATAGGCAATGGCCAATGTCGTTTCTTTCGAACTCGCATCTACAACGAAACCAACATCGATCCCACCTTTGCCACCCAGCGGCAAGAAAACTGTCCGTTCAGCGGCGGAGACTCGAACTTGGCCCCTCTTGACTCAACCAATACTATTTTTGACAATAGATATTACGTAGACCTAACTAATAAGCGTGGCCTGTTTCATTCGGACCAACAACTCTTCAACGGCGGTTCACAAGATGCGTTGGTTCGGACCTACAGTAAAAGTCCTGCTGTCTTTAAATCGGATTTTGTAAATGCGATGATCAAGATGGGGAATCTCCGTCCACCAAGTGGAACCCCCGCTGAGATTAGAAAAAATTACTACATTCTCCGTGATTCTGCAATGGACTCTGATAAGGAAATGTCATCGACTACTGTAGAAAGTAAGGACGCAGTAACTGGTCACATAATCTCCACTACTATTGGAGGGAAAAATGGCGAGCAAAAACAGACTATTAGCTACATGGCAGAACGTGTTGTTGGTTCTGGATCGTTTGGAATTGTTTTCCAGGCTAAATGCTTGGAAACCGGGGAGACTTTTGCAATAAAGAAAGTCTTACAGGACAGGCGTTATAAAAATCGTGAGCTACAGTTGATGCGCTTGATGGATCATCCAAATGTTGTTTCCTTGAAGCATTGTTTTTTCTCTACAACTAGTAAAGATGAACTCTTCTTAAATCTGGTAATGGAATACGTTCCCGAGACTATGTATCGAGTACTGAAGCACTACTGCAGTATAAACCAGAGGATGCCACTCATCTATGTGAAACTTTACACTTATCAAATCTTCAGGGGGCTAGCTTATATCCACACTGTTCCTGGAGTTTGTCACCGCGATGTAAAGCCTCATAATCTTTTGGTTGATCCTCTCACACATCAGGTCAAGCTTTGTGATTTTGGTAGTGCAAAAGTCCTGGTTAAAGGTGAAGCAAACATCTCTTACATATGCTCCCGGTACTATCGAGCTCCGGAGCTGATATTTGGTGCAACAGAGTATTCTACATCCATTGACATATGGTCAGCTGGTTGTGTTCTTGCAGAGCTGCTTCTAGGCCAGCCATTGTTCCCTGGTGAAAGTGCCGTAGATCAACTGGTTGAAATTATCAAGGTTCTTGGCACTCCAACTCGAGAAGAAATTCGATGCATGAATCCAAATTATACAGATTTTAGGTTTCCTCAGATTAAAGCCCATCCGTGGCACAAGGTCTTCCACAAACGAATGCCACCTGAAGCTATAGATCTTACTTCAAGGCTTCTTCAATATTCGCCTGGTCTCCGTTGCACTGCACTTGAAGCATGTGCGCATCCTTTCTTTGATGAGCTTCGGGAGCCTAATGCCCGCCTTCCCGATGGTCGTCAGTTGCCCCCACTTTTCAACTTTAAACAGGAACTTTCAGGAGCATCACTTGAACTGATAAAGAGGCTCATACCAGAGCATGTTCGGCGGCAGACCGGACTTTCATTCACCCATCATGCAGTTGCATAG | 2097 | 45.06 | MASIIISRLFIVFSLLAFSANAQLSSSFYSKSCPRLQSIVRAGMTKAINKEKRMGASILRLFFHDCFVNGCDGSILLDDTSTFTGEKNAFPNRNSARGFEVIDDIKTQVEAACNATVSCADILALATRDGVVLLGGPNWVVPLGRRDSRTASESGANSNLPGPASDLSTLISLFAAQGLNARDMTALSGAHTIGNGQCRFFRTRIYNETNIDPTFATQRQENCPFSGGDSNLAPLDSTNTIFDNRYYVDLTNKRGLFHSDQQLFNGGSQDALVRTYSKSPAVFKSDFVNAMIKMGNLRPPSGTPAEIRKNYYILRDSAMDSDKEMSSTTVESKDAVTGHIISTTIGGKNGEQKQTISYMAERVVGSGSFGIVFQAKCLETGETFAIKKVLQDRRYKNRELQLMRLMDHPNVVSLKHCFFSTTSKDELFLNLVMEYVPETMYRVLKHYCSINQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPHNLLVDPLTHQVKLCDFGSAKVLVKGEANISYICSRYYRAPELIFGATEYSTSIDIWSAGCVLAELLLGQPLFPGESAVDQLVEIIKVLGTPTREEIRCMNPNYTDFRFPQIKAHPWHKVFHKRMPPEAIDLTSRLLQYSPGLRCTALEACAHPFFDELREPNARLPDGRQLPPLFNFKQELSGASLELIKRLIPEHVRRQTGLSFTHHAVA | 698 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 2684768 | 2694479 | - | CcPI632755_07g002650.1 | Cco07g0265 | 182918 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco07g0265 | 698 | Pfam | Peroxidase | 40 | 278 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco07g0265 | 698 | CDD | STKc_GSK3 | 353 | 645 | IPR039192 | - | |
| Cco07g0265 | 698 | SUPERFAMILY | Protein kinase-like (PK-like) | 357 | 666 | IPR011009 | - | |
| Cco07g0265 | 698 | FunFam | Glycogen synthase kinase-3 beta | 342 | 437 | - | - | |
| Cco07g0265 | 698 | ProSiteProfiles | Protein kinase domain profile. | 358 | 642 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Cco07g0265 | 698 | Gene3D | Peroxidase, domain 2 | 161 | 294 | - | - | |
| Cco07g0265 | 698 | SUPERFAMILY | Heme-dependent peroxidases | 23 | 311 | IPR010255 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco07g0265 | 698 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 479 | 491 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Cco07g0265 | 698 | ProSitePatterns | Peroxidases proximal heme-ligand signature. | 183 | 193 | IPR019793 | - | |
| Cco07g0265 | 698 | ProSiteProfiles | Plant heme peroxidase family profile. | 23 | 315 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco07g0265 | 698 | FunFam | Shaggy-related protein kinase kappa | 438 | 685 | - | - | |
| Cco07g0265 | 698 | Gene3D | Transferase(Phosphotransferase) domain 1 | 438 | 685 | - | - | |
| Cco07g0265 | 698 | ProSitePatterns | Peroxidases active site signature. | 55 | 66 | IPR019794 | GO:0004601(InterPro) | |
| Cco07g0265 | 698 | Gene3D | Phosphorylase Kinase; domain 1 | 343 | 437 | - | - | |
| Cco07g0265 | 698 | FunFam | Peroxidase | 161 | 294 | - | - | |
| Cco07g0265 | 698 | PRINTS | Haem peroxidase superfamily signature | 135 | 147 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco07g0265 | 698 | PRINTS | Haem peroxidase superfamily signature | 235 | 250 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco07g0265 | 698 | PRINTS | Haem peroxidase superfamily signature | 55 | 69 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco07g0265 | 698 | PRINTS | Haem peroxidase superfamily signature | 183 | 198 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco07g0265 | 698 | PRINTS | Haem peroxidase superfamily signature | 117 | 134 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco07g0265 | 698 | PRINTS | Plant peroxidase signature | 57 | 77 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco07g0265 | 698 | PRINTS | Plant peroxidase signature | 289 | 302 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco07g0265 | 698 | PRINTS | Plant peroxidase signature | 249 | 266 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco07g0265 | 698 | PRINTS | Plant peroxidase signature | 233 | 248 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco07g0265 | 698 | PRINTS | Plant peroxidase signature | 116 | 126 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco07g0265 | 698 | PRINTS | Plant peroxidase signature | 182 | 194 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco07g0265 | 698 | PRINTS | Plant peroxidase signature | 135 | 150 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco07g0265 | 698 | PRINTS | Plant peroxidase signature | 33 | 52 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco07g0265 | 698 | PRINTS | Plant peroxidase signature | 97 | 110 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco07g0265 | 698 | PANTHER | GLYCOGEN SYNTHASE KINASE-3 ALPHA | 327 | 686 | IPR050591 | GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER) | |
| Cco07g0265 | 698 | Gene3D | - | 28 | 310 | - | - | |
| Cco07g0265 | 698 | ProSitePatterns | Protein kinases ATP-binding region signature. | 364 | 388 | IPR017441 | GO:0005524(InterPro) | |
| Cco07g0265 | 698 | FunFam | Peroxidase | 27 | 166 | - | - | |
| Cco07g0265 | 698 | Pfam | Protein kinase domain | 358 | 642 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Cco07g0265 | 698 | SMART | serkin_6 | 358 | 642 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Cco07g0265 | 698 | CDD | secretory_peroxidase | 23 | 310 | IPR033905 | GO:0004601(InterPro)|GO:0042744(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco01g1669 | Cco-Chr1:29440863 | Cco07g0265 | Cco-Chr7:2684768 | 1.90E-63 | dispersed | |
| Cco04g1496 | Cco-Chr4:30367579 | Cco07g0265 | Cco-Chr7:2684768 | 7.40E-35 | dispersed | |
| Cco07g0265 | Cco-Chr7:2684768 | Cco10g1392 | Cco-Chr10:26983837 | 3.40E-184 | dispersed | |
| Cco02g1914 | Cco-Chr2:32026298 | Cco07g0265 | Cco-Chr7:2684768 | 1.50E-206 | wgd | |
| Cco04g2164 | Cco-Chr4:35379808 | Cco07g0265 | Cco-Chr7:2684768 | 4.50E-197 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 86956 | PF00069 | Pkinase | 4.80E-62 | CL0016 | Cco | PK |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco07g0265 | K14502 | - | cit:102626148 | 722.235 |