Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0266 ATGGAACTTGAAGACGACTACCGAAGAAAACAGCAACTCCTTCTTCTGGTAATCGTTGTACTTGCTTCTCTCGCTCTCGTTTCTTTGCTCGTCGCTTTCAGCTATTACTGCTATATCAGCAATAAGGTCTCCAAGCGCCTCAAGATCCGCAAAAGGGCTGATCTTGAAGATGGAGGTAGTTTTGAAAATGGTAAAGAATTTTCCACTGAGAAAGGTCTCCAATTGTTCACCTTCAAGCAGCTACACTCCGCAACAGGTGGTTTTAGCAAGTCAAATGTGGTTGGGCATGGTAGCTTTGGGCATGTATATCGGGGAGTCCTGAACGATGGGAGAAAGGTTGCGGTTAAGCTTATGGATCAAGCAGGGAAGCAGGGAGAGGACGAATTTAAAGTGGAGGTGGAATTGTTAAGTCGCCTTCATTCACCATATTTGTTGGCATTGCTTGGGTATTGCTCAGATAACAATCATAAATTACTCGTATACGAGTTCATGGCAAATGGCGGTCTGCAAGAACATCTATACCCTATTAGCAGTTCAAATTCAATCAGCGTTAAGTTGGACTGGGAAACACGACTGAGAGTTGCCCTCGAAGCTGCCAAAGGTTTGGAGTATTTACATGAACACGTATGTCCCCCGGTAATTCATAGGGATTTCAAGAGCAGCAATGTCCTGCTGGACAAAAACCTTCATGCTAAGGTTTCTGATTTTGGATTGGCAAAGATCGGCTCAGACAAAGCTGGGGGTCACGTCTCCACTCGAGTTTTAGGGACACAAGGATATGTTGCCCCTGAGTATGCGCTAACAGGGCATTTAACAACAAAGTCAGATGTCTATAGTTATGGGGTTGTCCTCTTGGAGCTGCTCACTGGCAGAGTTCCAGTTGATATGAAGAGAACTCCTGGGGAAGCTTCCCTTGTTTCTTGGGCTTTGCCGAGGCTGACTGATAGGGAGAGAGTAATGCACATAATGGACCCTGCATTGGAGGGTCAGTACTCCATGAAAGATGTTGTTCAAGTGGCAGCAATTGCAGCAATGTGCGTTCAACCGGAGGCGGATTACAGGCCGCTGATGGCCGATGTTGTCCAGTCACTGGTTCCTCTTGTGAGAAATTACCGGACTTCAAAGATCGGTAGCAGTTCTAGTTCCAGCGCTACCAAGTCACCTGCAGCGCACGACAATGCTAGTTCAGGAGACTGA 1197 46.62 MELEDDYRRKQQLLLLVIVVLASLALVSLLVAFSYYCYISNKVSKRLKIRKRADLEDGGSFENGKEFSTEKGLQLFTFKQLHSATGGFSKSNVVGHGSFGHVYRGVLNDGRKVAVKLMDQAGKQGEDEFKVEVELLSRLHSPYLLALLGYCSDNNHKLLVYEFMANGGLQEHLYPISSSNSISVKLDWETRLRVALEAAKGLEYLHEHVCPPVIHRDFKSSNVLLDKNLHAKVSDFGLAKIGSDKAGGHVSTRVLGTQGYVAPEYALTGHLTTKSDVYSYGVVLLELLTGRVPVDMKRTPGEASLVSWALPRLTDRERVMHIMDPALEGQYSMKDVVQVAAIAAMCVQPEADYRPLMADVVQSLVPLVRNYRTSKIGSSSSSSATKSPAAHDNASSGD 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2710180 2713175 - CcPI632755_07g002660.1 Cco07g0266 182919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0266 398 Gene3D Phosphorylase Kinase; domain 1 55 163 - -
Cco07g0266 398 FunFam Serine/threonine-protein kinase PBS1 57 163 - -
Cco07g0266 398 Gene3D Transferase(Phosphotransferase) domain 1 164 387 - -
Cco07g0266 398 FunFam Receptor-like serine/threonine-protein kinase ALE2 164 384 - -
Cco07g0266 398 ProSitePatterns Protein kinases ATP-binding region signature. 94 116 IPR017441 GO:0005524(InterPro)
Cco07g0266 398 PANTHER OS01G0750732 PROTEIN 19 389 IPR050885 -
Cco07g0266 398 ProSiteProfiles Protein kinase domain profile. 88 368 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g0266 398 CDD STKc_IRAK 94 367 - -
Cco07g0266 398 Pfam Protein tyrosine and serine/threonine kinase 91 364 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco07g0266 398 MobiDBLite consensus disorder prediction 375 398 - -
Cco07g0266 398 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco07g0266 398 SUPERFAMILY Protein kinase-like (PK-like) 66 364 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1745 Cco-Chr3:32165403 Cco07g0266 Cco-Chr7:2710180 2.50E-113 dispersed
Cco07g0266 Cco-Chr7:2710180 Cco10g1138 Cco-Chr10:23800740 3.70E-87 dispersed
Cco09g0321 Cco-Chr9:2803776 Cco07g0266 Cco-Chr7:2710180 1.40E-39 dispersed
Cco07g1650 Cco-Chr7:30558190 Cco07g0266 Cco-Chr7:2710180 7.60E-67 transposed
Cco03g0690 Cco-Chr3:7120633 Cco07g0266 Cco-Chr7:2710180 6.80E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86957 PF07714 PK_Tyr_Ser-Thr 6.80E-45 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0266 - - - 0.0