Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0275 ATGGCTTCCACTAAAGAACGCGAGAACTTCGTTTACATCGCTAAGCTCGCCGAGCAGGCCGAGCGTTATGATGAAATGGTGGATGCAATGAAGAATGTTGCAAAGCTTGATGTCGAATTGACAGTTGAGGAAAGAAACTTACTTTCTGTTGGGTACAAGAATGTGGTTGGTGCACGGCGAGCCTCATGGAGAATCTTATCATCAATAGAGCAGAAAGAAGAAGCGAAAGGAAATGAAACAAATGCTAAACGCATCAAAGAATACAGACAAAAGGTTGAATCAGAGCTCTCTGGTATTTGTAATGATATCATGACAGTGATTGACGAGCACCTAATTCCGTCGGCTTCAGCTGGGGAATCAACAGTATTCTACTATAAGATGAAAGGAGACTATTATCGTTACCTTGCAGAATTTAAATCTGGTAATGAGAAGAAAGATGCAGCTGATCAATCGATGAAAGCATATGAGGCTGCAACCAGCTCAGCCGAATCTGAGTTACCCCCTACACATCCTATCCGCTTGGGGTTGGCATTAAATTTCTCTGTCTTCTATTATGAAATCTTGAATTCACCTGAAAGGGCCTGCCACCTTGCAAAGCAAGCTTTTGATGAAGCCATTTCCGAACTTGACACCCTGAATGAGGAGTCATACAAAGATAGCACCTTAATCATGCAGCTTCTTAGGGACAACCTTACACTATGGACTTCAGACATTCCAGAAGATGGAGATGATGCCCAAAAGATCAATGGCACTGCCAAGGTTTCTGGTGGTGACGATGCCGAGTGA 786 43.26 MASTKERENFVYIAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVVGARRASWRILSSIEQKEEAKGNETNAKRIKEYRQKVESELSGICNDIMTVIDEHLIPSASAGESTVFYYKMKGDYYRYLAEFKSGNEKKDAADQSMKAYEAATSSAESELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDIPEDGDDAQKINGTAKVSGGDDAE 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2825791 2829079 + CcPI632755_07g002750.1 Cco07g0275 182928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0275 261 PRINTS 14-3-3 protein zeta signature 208 237 IPR000308 -
Cco07g0275 261 PRINTS 14-3-3 protein zeta signature 88 112 IPR000308 -
Cco07g0275 261 PRINTS 14-3-3 protein zeta signature 181 207 IPR000308 -
Cco07g0275 261 PRINTS 14-3-3 protein zeta signature 154 180 IPR000308 -
Cco07g0275 261 PRINTS 14-3-3 protein zeta signature 39 68 IPR000308 -
Cco07g0275 261 PRINTS 14-3-3 protein zeta signature 119 141 IPR000308 -
Cco07g0275 261 SUPERFAMILY 14-3-3 protein 6 237 IPR036815 -
Cco07g0275 261 FunFam 14-3-3 protein epsilon 2 248 - -
Cco07g0275 261 Coils Coil 195 215 - -
Cco07g0275 261 Pfam 14-3-3 protein 14 235 IPR023410 -
Cco07g0275 261 ProSitePatterns 14-3-3 proteins signature 1. 45 55 IPR023409 -
Cco07g0275 261 ProSitePatterns 14-3-3 proteins signature 2. 217 236 IPR023409 -
Cco07g0275 261 MobiDBLite consensus disorder prediction 239 261 - -
Cco07g0275 261 PIRSF 14-3-3 1 247 IPR000308 -
Cco07g0275 261 PANTHER 14-3-3 PROTEIN 6 240 IPR000308 GO:0005737(PANTHER)|GO:0007165(PANTHER)|GO:0034613(PANTHER)
Cco07g0275 261 Coils Coil 13 33 - -
Cco07g0275 261 SMART 1433_4 7 248 IPR023410 -
Cco07g0275 261 Gene3D - 1 249 IPR036815 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0275 Cco-Chr7:2825791 Cco08g1195 Cco-Chr8:23681446 8.70E-109 dispersed
Cco07g0275 Cco-Chr7:2825791 Cco08g1263 Cco-Chr8:24433952 4.20E-111 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0275 K06630 - csv:101208446 500.36