Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0300 ATGCAGCGGAATGTGATAATGTTGGTGAATTTAGTAGTGATGGCCATGGGGAAGTTTCTTGTGGTTGAATCAGCTCGGCTTCCAAACCGTACGTCAGCTTCCCATTGGCTCCCCGCCACCGCCACGTGGTACGGCAGCCCTGAAGGCGACGGCAGCGACGGTGGGGCATGTGGCTACGGTAGTTTGGTGGACGTGAAGCCGTTCAAAGCGAGAGTAGGGGCCGTGAGTCCAATCCTATTCAAGGACGGCGAAGGGTGCGGAGCGTGCTACAAGGTCCGGTGCTTGGACCGAGCCATATGTGCCAAACGGGCTGTTACCATAATAGTGACCGACGAGTGTCCGGGTGGATACTGTGCCAGTGGCCGCACCCACTTCGACTTGAGTGGCGCCGCCTTTGGACGCATGGCAGTGGCAGGTGCGGGCAGCCGTCTTCGGGACCGAGGCGAATTGACCGTCATGTACAGACGGACACCGTGTAAATATCGAGGAAAGAATATAGCGTTTCATGTGAATGAAGGTTCTACGGATCATTGGCTTTCACTTTTGGTGGAGTTCGAGGATGGAGATGGTGATATTGGTTCTATGCAAATCAAACAAGCAAATTCAAATGAATGGATGGAAATGGCACATGTGTGGGGTGCAACATGGTGCATAAATGGAGGGCCTTTGGAGGGTCCATTTTCAGTGAAGTTAACAACATTATCCACAGCCAAAACTCTCTCAGCAAGAGATGTTATCCCAAGGAATTGGTCTCCAAAGGCAACGTACACTTCTCGTTTGAATTTCTCCTAA 792 51.89 MQRNVIMLVNLVVMAMGKFLVVESARLPNRTSASHWLPATATWYGSPEGDGSDGGACGYGSLVDVKPFKARVGAVSPILFKDGEGCGACYKVRCLDRAICAKRAVTIIVTDECPGGYCASGRTHFDLSGAAFGRMAVAGAGSRLRDRGELTVMYRRTPCKYRGKNIAFHVNEGSTDHWLSLLVEFEDGDGDIGSMQIKQANSNEWMEMAHVWGATWCINGGPLEGPFSVKLTTLSTAKTLSARDVIPRNWSPKATYTSRLNFS 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3021118 3024467 + CcPI632755_07g003000.1 Cco07g0300 182953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0300 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 177 258 IPR007117 -
Cco07g0300 263 SUPERFAMILY Barwin-like endoglucanases 27 163 IPR036908 -
Cco07g0300 263 PRINTS Expansin/Lol pI family signature 53 71 IPR007118 GO:0005576(InterPro)
Cco07g0300 263 PRINTS Expansin/Lol pI family signature 76 94 IPR007118 GO:0005576(InterPro)
Cco07g0300 263 PRINTS Expansin/Lol pI family signature 35 50 IPR007118 GO:0005576(InterPro)
Cco07g0300 263 PRINTS Expansin/Lol pI family signature 244 258 IPR007118 GO:0005576(InterPro)
Cco07g0300 263 PRINTS Expansin/Lol pI family signature 205 219 IPR007118 GO:0005576(InterPro)
Cco07g0300 263 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576(InterPro)
Cco07g0300 263 CDD DPBB_EXPB_N 36 159 - -
Cco07g0300 263 SMART dpbb_1 72 154 IPR007112 -
Cco07g0300 263 Pfam Expansin C-terminal domain 166 247 IPR007117 -
Cco07g0300 263 SUPERFAMILY PHL pollen allergen 164 258 IPR036749 -
Cco07g0300 263 Gene3D - 161 263 IPR036749 -
Cco07g0300 263 FunFam Beta-expansin 3 161 263 - -
Cco07g0300 263 PANTHER EXPANSIN-B3 13 262 - GO:0006949(PANTHER)|GO:0009506(PANTHER)
Cco07g0300 263 Gene3D - 21 160 IPR036908 -
Cco07g0300 263 FunFam Expansin B3 22 160 - -
Cco07g0300 263 PRINTS Major pollen allergen Lol pI signature 74 85 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cco07g0300 263 PRINTS Major pollen allergen Lol pI signature 114 129 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cco07g0300 263 PRINTS Major pollen allergen Lol pI signature 136 151 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cco07g0300 263 PRINTS Major pollen allergen Lol pI signature 184 199 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cco07g0300 263 PRINTS Major pollen allergen Lol pI signature 234 251 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cco07g0300 263 PRINTS Major pollen allergen Lol pI signature 168 183 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cco07g0300 263 Pfam Lytic transglycolase 74 141 IPR009009 -
Cco07g0300 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 54 164 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0300 Cco-Chr7:3021118 Cco10g0638 Cco-Chr10:8819650 2.20E-27 dispersed
Cco05g0035 Cco-Chr5:381582 Cco07g0300 Cco-Chr7:3021118 3.00E-64 transposed
Cco09g1286 Cco-Chr9:14098488 Cco07g0300 Cco-Chr7:3021118 3.20E-23 transposed
Cco02g1877 Cco-Chr2:31664560 Cco07g0300 Cco-Chr7:3021118 6.00E-121 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0300 K20628 - csv:101205324 483.411