Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco07g0302 | ATGGTGGGCTCTGAGGAGGACTCTGGTACTTCTGGGGCTGCGGCGGTGCAGCTCTCTGGCAGTCGGAAAATGTTCTGGCGCTCGGCTTCATGGTCTGCATCACGTTCCTCACTTCACCATCCTGAAGTGAACAGAGAAGGTGGAGACCCCAATGGGAATCTTGGTGATAGTAATGGACCAAGCCGAATTTTCCCTGCTCCATTAACTCCAAGATCACAGCAGCATTGCAAAGCAAGGTCGTGTTTGCCTCCTTTACAGCCTTTGTCGATTGCTCGGCGAAGCTTAGATGAATGGCCGAAGGCGGGGTCAGATGATATCGGCGAGTGGCCACAACCTCCTACTCCGAGTGGCAGAGGAAATGGCGAGAGGTTGAAACTTGATTTGTCGACAATTCAGAGAAATCCAGAAAAGAACTGTGGGCTGGTGAAGAGGGATAAAATTGCTTTCTTTGACAAAGAGTGTTCAAAAGTGGCGGAACATGTATATCTTGGTGGTGATGCGGTTGCTCGAGATAGGGATATACTTAAACATAATGGAATTACTCATGTGTTGAATTGTGTAGGATTCGTATGCCCGGAGTACTTCAAAGATGATTTTGTGTACAGAACTTTGTGGTTGCAGGATAGCCCATCTGAGGATATTACTAGTATTCTTTATGATGTTTTTGACTACTTTGAAGATGTTAGGGAAAAAAATGGTAGGGTTTTTGTTCATTGTTGCCAAGGAGTATCACGGTCGACGTCCTTGGTGATTGCCTATCTGATGTGGAGAGAAGGCCAGAGTTTTGATGATGCATTTCAATATGTGAAGGCAGCCAGAGGTATTGCCGACCCGAATATGGGTTTTGCTTGCCAGTTATTGCAGTGCCAAAAGCGGGTCCATGCTTTTCCTCTTAGCCCTAGTTCACTGTTGAGGATGTACAGAATTGCTCCACACTCACCCTATGATCCTTTGCATTTGGTCCCCAAAATGTTAAATGATCCTTCGCCCTCAGCTCTGGATTCTAGAGGTGCATTTATCATTCATATACCCTCTGCCATATTTGTTTGGATTGGTAAAAACTGCGAAGCTATCATGGAAAGAGATGCGAGGGGAGCTCTTGTGCAGATTGTTCGGTATGAGAGAGTGCAAGGGCCTATATATGTAATTAAGGAAGGGGAAGAACCAACGAACTTTTGGGATTCTTTTGCAAACCTATTACCTTTAATGGATAAATCTAACAGTAAAGTTAATCTTGGGGAATTAAAAGTTAAGCCTTATCCAGGGGAGAGGAAAGTTGATTCCTACGATGTGGATTTTGAAATTTTTCAGAAGGCTATTACTGGTGGTTTCGTACCTCCATTTCCTTCATCTGAAAATGAGCATGAAACCCATCTTCCTGTTAGAGAAAGCAGTTGGAGTGTGCTTAGGCGTAAGTTTGCCTCTGGAAATATGAAAGAGTTTGTATCAGCTCCTCGAATATCGCTTTCTAGGGTCTATTCAGACTCGTTGATGATGATGCATTTTTCTGCAAAATCTTCATCACCTTCAGCATTTTCTTTATCGTCATCATCTTCTTCTCCTATCTATCTTTCGCCGGACTCTCTCTCTTCTGATTCAAGTTCAAGTTCAAGTTCCAAGTACTTTTCAGAATCTTCTTTAGATTCTCCATCTGCTTCTTCACCTTCAGTTCCAGTTTCCTCATCTCTGTCTAGTTTTTCTAGCATGTCTCTTACCTCATCCAATAGTTCCTTAGAACCTATGCCCAGTGGTCCAGAAACTAATGATGCAATCCCTTTGGAATCAAGTTCTCGCCCATTCTCATTCCCATCTAAAAAGTTCTCACCTTCTCTTGCAGAACGTCGAGGTACTGCAAAATCTCTGACATTGCCTGCAATGCCTAGTAAAATCAAAGCAACAAATAGTGCCTCAAGGTTTCTCGCCACTCAAGAAGATTTAAAGAGGAAAAACAAGACTTCTTGCCCTCTTAATGTATCATTTAATATGAAAAATGGCTCAGAGCCTATGGATAGGGTTGAAAATGAACAAACAAGTTCCACTCAGAAGTTCAAGAATATTGAAAATGGAATGGACGTAAGGGTAGGTAGTGTGGCCTCGTGCCAGCAGGAAACTAGAGTTGCCGGACAATCTGCTGGTTCCTGGAAAAGCTATCCCAAACTTTTTGGAGAAGGCATGGTATCCAATGTGTCAAATGGAAAGCAAGATGATGAATTTGTGCAACCTATGGTATACTGTTGGCCGGAGTTGGAAAAGATTGCAGCTTTTGACACAAATTACCTCAATTCTAAAGCTGCTGTAGTGATTTTCTCTCCAAGTAGGTATTTAGGCAAGAAGGATGACATGATGCTGTATATTTGGGTAGGAAGTTCTTTTGACCATGATTTATCACAGGTTCATGTAAAGAGGGATAAAGACTTGGTTGATTTAGAACAGATAGACTGGGTTAAGGTTGGTCAATATGTACTTACGGAAATAGGTCTGCCAGAAAATACAGAAATTAAGATTGTTAAAGAAGGTGAAGAAACAGAGGAATTTCTTGCACGATTGATCATCAAAGATGGACTCCCCTTACGTAATTTAGTGAGGAGACGCTTGAAAATCCAAGTCGTTTTATAG | 2616 | 42.32 | MVGSEEDSGTSGAAAVQLSGSRKMFWRSASWSASRSSLHHPEVNREGGDPNGNLGDSNGPSRIFPAPLTPRSQQHCKARSCLPPLQPLSIARRSLDEWPKAGSDDIGEWPQPPTPSGRGNGERLKLDLSTIQRNPEKNCGLVKRDKIAFFDKECSKVAEHVYLGGDAVARDRDILKHNGITHVLNCVGFVCPEYFKDDFVYRTLWLQDSPSEDITSILYDVFDYFEDVREKNGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQYVKAARGIADPNMGFACQLLQCQKRVHAFPLSPSSLLRMYRIAPHSPYDPLHLVPKMLNDPSPSALDSRGAFIIHIPSAIFVWIGKNCEAIMERDARGALVQIVRYERVQGPIYVIKEGEEPTNFWDSFANLLPLMDKSNSKVNLGELKVKPYPGERKVDSYDVDFEIFQKAITGGFVPPFPSSENEHETHLPVRESSWSVLRRKFASGNMKEFVSAPRISLSRVYSDSLMMMHFSAKSSSPSAFSLSSSSSSPIYLSPDSLSSDSSSSSSSKYFSESSLDSPSASSPSVPVSSSLSSFSSMSLTSSNSSLEPMPSGPETNDAIPLESSSRPFSFPSKKFSPSLAERRGTAKSLTLPAMPSKIKATNSASRFLATQEDLKRKNKTSCPLNVSFNMKNGSEPMDRVENEQTSSTQKFKNIENGMDVRVGSVASCQQETRVAGQSAGSWKSYPKLFGEGMVSNVSNGKQDDEFVQPMVYCWPELEKIAAFDTNYLNSKAAVVIFSPSRYLGKKDDMMLYIWVGSSFDHDLSQVHVKRDKDLVDLEQIDWVKVGQYVLTEIGLPENTEIKIVKEGEETEEFLARLIIKDGLPLRNLVRRRLKIQVVL | 871 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 3042846 | 3047451 | + | CcPI632755_07g003020.1 | Cco07g0302 | 182955 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco07g0302 | 871 | ProSiteProfiles | Dual specificity protein phosphatase domain profile. | 153 | 295 | IPR020422 | GO:0006470(InterPro) | |
Cco07g0302 | 871 | SMART | VILL_6 | 305 | 399 | IPR007122 | GO:0051015(InterPro) | |
Cco07g0302 | 871 | ProSitePatterns | Tyrosine specific protein phosphatases active site. | 237 | 247 | IPR016130 | GO:0016311(InterPro) | |
Cco07g0302 | 871 | Gene3D | Protein tyrosine phosphatase superfamily | 136 | 295 | IPR029021 | - | |
Cco07g0302 | 871 | MobiDBLite | consensus disorder prediction | 573 | 620 | - | - | |
Cco07g0302 | 871 | CDD | DSP | 154 | 288 | - | - | |
Cco07g0302 | 871 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 147 | 294 | IPR029021 | - | |
Cco07g0302 | 871 | MobiDBLite | consensus disorder prediction | 100 | 120 | - | - | |
Cco07g0302 | 871 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 212 | 273 | IPR000387 | GO:0016311(InterPro) | |
Cco07g0302 | 871 | PANTHER | MKPA PROTEIN | 16 | 847 | - | - | |
Cco07g0302 | 871 | SMART | dsp_5 | 153 | 292 | IPR020422 | GO:0006470(InterPro) | |
Cco07g0302 | 871 | Pfam | Dual specificity phosphatase, catalytic domain | 161 | 291 | IPR000340 | GO:0016311(InterPro) | |
Cco07g0302 | 871 | MobiDBLite | consensus disorder prediction | 573 | 604 | - | - | |
Cco07g0302 | 871 | Gene3D | Severin | 304 | 399 | IPR029006 | - | |
Cco07g0302 | 871 | SUPERFAMILY | Actin depolymerizing proteins | 300 | 401 | - | - | |
Cco07g0302 | 871 | MobiDBLite | consensus disorder prediction | 29 | 78 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g2858 | Cco-Chr5:36211764 | Cco07g0302 | Cco-Chr7:3042846 | 1.10E-152 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco07g0302 | - | - | - | 0.0 |