Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0317 ATGGAGGGTTTTGTGAGGTTTTTGGGTTTGGCAAAGCCATATTTTGGAGTTCTTTTTATGCAATTTGGTTCGGCTGGAATGGCGATTCTTGCAAAGTTTGCTTTGAACAAAGGGATGAGCCAATATGTTTTTGTGTTTTATCGTATGATTATCGCTACTATTATTATTGCTCCTTTTGCCATCATATTTGAAAGGAAAGTGAAGACAAAGATGACCATTCCGTTGGTCTTCAAGATTGTGATGTTGGGTTTATTAGAGCCAGTGATTGATCTAAACTTATACTTTACTGGGATGAAGTATACAACAGCAACCTTTGCAGTTGCCATGTGCAATGTTCTACCAGCTTTTGCTTTCCTCATGGCTTGGGCTTGCAGGCTTGAGAGAGTGAATATTTTGAAAAGGGGAAGCCAAGCAAAAATCCTAGGAACCATAGTAACAGTAGGAGGAGCGATGATTATGACTTTCATTAGAGGACCCATGTTGAATCTGCCATGGACAAAAGCCAACCATCCCTCTGCTTCTTCTTCAACTGCTTCAATAAATCACCAAGACCAAATCAAGGGCTCCCTCATGATTGCAATTGGCTGCATTTGCCAGTCAGCTTTCATCATTCTTCAGGCGATTACATTGAAATTGTACCCAGCTGAGCTGTCTCTTACAGCATTGATATGCTTGGTGGCCACTATTGGAGGCTGTGTGGTTGCTTTGGTCATGGAAAGAGGGAACCCTTCTGCTTGGGCTTTGCATTTTGATAGCCAGCTTCTATCTGTGGTTTACGCTGGAGTAATATGTTCAGGGGTAACATATTATATTCAAGGAATGGTGATGCAAATAAAAGGGCCTGTTTTTGTCACTGCATTCAATCCGCTGTCCATGATTTTTGTTGCAATCATGAGCTCCTTCATCTTGTCTGAGATTATGTTGCTGGGCAGGATTATTGGAGCAGTGACCATAATCACTGGGTTGTACCTAGTTCTGTGGGGCAAAAGAAAAGATCAACTTTCAGTTAAATCAGACTGTGATAACATAGCACATGGTAAGCAACAAATGACTGAAATAGGTGAGGCTTTGAAGACGGATCAATCGAGTCAAGAATTCGCCTCAGCTTGA 1110 41.53 MEGFVRFLGLAKPYFGVLFMQFGSAGMAILAKFALNKGMSQYVFVFYRMIIATIIIAPFAIIFERKVKTKMTIPLVFKIVMLGLLEPVIDLNLYFTGMKYTTATFAVAMCNVLPAFAFLMAWACRLERVNILKRGSQAKILGTIVTVGGAMIMTFIRGPMLNLPWTKANHPSASSSTASINHQDQIKGSLMIAIGCICQSAFIILQAITLKLYPAELSLTALICLVATIGGCVVALVMERGNPSAWALHFDSQLLSVVYAGVICSGVTYYIQGMVMQIKGPVFVTAFNPLSMIFVAIMSSFILSEIMLLGRIIGAVTIITGLYLVLWGKRKDQLSVKSDCDNIAHGKQQMTEIGEALKTDQSSQEFASA 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3183075 3186973 - CcPI632755_07g003170.1 Cco07g0317 182970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0317 369 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 155 - -
Cco07g0317 369 SUPERFAMILY Multidrug resistance efflux transporter EmrE 244 331 - -
Cco07g0317 369 Pfam EamA-like transporter family 187 326 IPR000620 GO:0016020(InterPro)
Cco07g0317 369 Pfam EamA-like transporter family 14 153 IPR000620 GO:0016020(InterPro)
Cco07g0317 369 PANTHER WAT1-RELATED PROTEIN 18 339 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0317 Cco-Chr7:3183075 Cco09g2209 Cco-Chr9:36453328 4.20E-109 dispersed
Cco07g0317 Cco-Chr7:3183075 Cco07g0318 Cco-Chr7:3229658 2.00E-151 tandem
Cco07g0317 Cco-Chr7:3183075 Cco09g2207 Cco-Chr9:36400063 8.80E-99 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0317 - - - 0.0