Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0327 ATGGTTTTTTCTTCTTCTCTCCCTTCTTATTTGGATCCTCCTAACTGGCAATCGTTGACGAATCACCAAACGGGAGGAAATGATACTGCAAAGGATTCTGGTCAAGTTTTACTACCTCCACCACCTGGGGGTGGGGGAGGTAGTGACGGTGGTGGTGTTGGAGGTGGTACTGGGTCGATTAGGCCGGTTTCGATGACTGATCGAGCCCGGTTGGCGAAGATTCCGCAGCCGGAGGCCGGCTTGAAATGCCCTAGATGTGAATCTACAAATACCAAATTTTGTTACTTCAATAACTATAATCTTTCTCAGCCTCGCCACTTTTGTAAGACTTGTCGTCGGTATTGGACACGTGGTGGTGCACTGAGGAATGTTCCGGTCGGTGGTGGTTGCCGGAGGAACAAGAGGACCAAATCCCGGAATCGGTCTAAGTCTCCGGTGGCCAGTGAACGACAATTATTAGGTGGATCAGCTAATTCTTCTGCTGGGGTTTCACTTTCAACACAACCCCATTTGCCCTTTTTGTCTTCTTTACATAATTTCTCTAATTATGGCCTCAATTTGGGCATAATTCCGCCGCAAGCTCCTCCATCAAGCGGTGGCTCCACCACCGGAGGAGTGGATGTTCATGAATTTCAAGGTGATCATTGGAGATTACAACAACCACAACAATTCCCTCTCTTGGCTAATGATCAACAACCTAATTTCCTTTACACTTTCGAGCCACCGGAAGGCACCATGACTCGGTATAATCTTGGCGGGTTCTCCAGATTAGGGATTGAAAACGAAATGGGAATGACGACGGAGGCCGGGGTGGTGAAGGTGGAGGAGAGTAAAGGAATGAACTTAGGGAAGAGTTTTCAATTTTGGGTCGGTGGTGGTGGTGGAAGCGACGTTAATGCATGGAGCGGCGGTGGCGGCGATCTTCATGGCTTCTCTTCATCCTCCGCCAGCCACTTATTGAGACAGTAA 969 48.81 MVFSSSLPSYLDPPNWQSLTNHQTGGNDTAKDSGQVLLPPPPGGGGGSDGGGVGGGTGSIRPVSMTDRARLAKIPQPEAGLKCPRCESTNTKFCYFNNYNLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRTKSRNRSKSPVASERQLLGGSANSSAGVSLSTQPHLPFLSSLHNFSNYGLNLGIIPPQAPPSSGGSTTGGVDVHEFQGDHWRLQQPQQFPLLANDQQPNFLYTFEPPEGTMTRYNLGGFSRLGIENEMGMTTEAGVVKVEESKGMNLGKSFQFWVGGGGGSDVNAWSGGGGDLHGFSSSSASHLLRQ 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3355164 3356343 - CcPI632755_07g003270.1 Cco07g0327 182980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0327 322 ProSitePatterns Zinc finger Dof-type signature. 83 119 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cco07g0327 322 MobiDBLite consensus disorder prediction 1 31 - -
Cco07g0327 322 Pfam Dof domain, zinc finger 81 135 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cco07g0327 322 ProSiteProfiles Zinc finger Dof-type profile. 81 135 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cco07g0327 322 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 69 156 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco07g0327 322 MobiDBLite consensus disorder prediction 125 161 - -
Cco07g0327 322 MobiDBLite consensus disorder prediction 1 62 - -
Cco07g0327 322 MobiDBLite consensus disorder prediction 145 161 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0165 Cco-Chr3:1615655 Cco07g0327 Cco-Chr7:3355164 6.50E-43 dispersed
Cco04g1020 Cco-Chr4:25795764 Cco07g0327 Cco-Chr7:3355164 2.00E-39 dispersed
Cco04g2094 Cco-Chr4:34856520 Cco07g0327 Cco-Chr7:3355164 3.80E-26 dispersed
Cco04g2095 Cco-Chr4:34864206 Cco07g0327 Cco-Chr7:3355164 9.70E-30 dispersed
Cco07g0327 Cco-Chr7:3355164 Cco08g0793 Cco-Chr8:19784306 2.50E-25 dispersed
Cco04g2065 Cco-Chr4:34653218 Cco07g0327 Cco-Chr7:3355164 7.10E-26 transposed
Cco10g0781 Cco-Chr10:13711640 Cco07g0327 Cco-Chr7:3355164 1.50E-28 transposed
Cco10g2091 Cco-Chr10:34267190 Cco07g0327 Cco-Chr7:3355164 3.20E-47 wgd
Cco02g2164 Cco-Chr2:34377155 Cco07g0327 Cco-Chr7:3355164 6.90E-42 wgd
Cco07g0327 Cco-Chr7:3355164 Cco09g2189 Cco-Chr9:36236490 6.00E-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59604 PF02701 zf-Dof 4.40E-32 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0327 - - - 0.0