Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0327 ATGGTTTTTTCTTCTTCTCTCCCTTCTTATTTGGATCCTCCTAACTGGCAATCGTTGACGAATCACCAAACGGGAGGAAATGATACTGCAAAGGATTCTGGTCAAGTTTTACTACCTCCACCACCTGGGGGTGGGGGAGGTAGTGACGGTGGTGGTGTTGGAGGTGGTACTGGGTCGATTAGGCCGGTTTCGATGACTGATCGAGCCCGGTTGGCGAAGATTCCGCAGCCGGAGGCCGGCTTGAAATGCCCTAGATGTGAATCTACAAATACCAAATTTTGTTACTTCAATAACTATAATCTTTCTCAGCCTCGCCACTTTTGTAAGACTTGTCGTCGGTATTGGACACGTGGTGGTGCACTGAGGAATGTTCCGGTCGGTGGTGGTTGCCGGAGGAACAAGAGGACCAAATCCCGGAATCGGTCTAAGTCTCCGGTGGCCAGTGAACGACAATTATTAGGTGGATCAGCTAATTCTTCTGCTGGGGTTTCACTTTCAACACAACCCCATTTGCCCTTTTTGTCTTCTTTACATAATTTCTCTAATTATGGCCTCAATTTGGGCATAATTCCGCCGCAAGCTCCTCCATCAAGCGGTGGCTCCACCACCGGAGGAGTGGATGTTCATGAATTTCAAGGTGATCATTGGAGATTACAACAACCACAACAATTCCCTCTCTTGGCTAATGATCAACAACCTAATTTCCTTTACACTTTCGAGCCACCGGAAGGCACCATGACTCGGTATAATCTTGGCGGGTTCTCCAGATTAGGGATTGAAAACGAAATGGGAATGACGACGGAGGCCGGGGTGGTGAAGGTGGAGGAGAGTAAAGGAATGAACTTAGGGAAGAGTTTTCAATTTTGGGTCGGTGGTGGTGGTGGAAGCGACGTTAATGCATGGAGCGGCGGTGGCGGCGATCTTCATGGCTTCTCTTCATCCTCCGCCAGCCACTTATTGAGACAGTAA 969 48.81 MVFSSSLPSYLDPPNWQSLTNHQTGGNDTAKDSGQVLLPPPPGGGGGSDGGGVGGGTGSIRPVSMTDRARLAKIPQPEAGLKCPRCESTNTKFCYFNNYNLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRTKSRNRSKSPVASERQLLGGSANSSAGVSLSTQPHLPFLSSLHNFSNYGLNLGIIPPQAPPSSGGSTTGGVDVHEFQGDHWRLQQPQQFPLLANDQQPNFLYTFEPPEGTMTRYNLGGFSRLGIENEMGMTTEAGVVKVEESKGMNLGKSFQFWVGGGGGSDVNAWSGGGGDLHGFSSSSASHLLRQ 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3355164 3356343 - CcPI632755_07g003270.1 Cco07g0327 182980

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0327 322 ProSitePatterns Zinc finger Dof-type signature. 83 119 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cco07g0327 322 MobiDBLite consensus disorder prediction 1 31 - -
Cco07g0327 322 Pfam Dof domain, zinc finger 81 135 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cco07g0327 322 ProSiteProfiles Zinc finger Dof-type profile. 81 135 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cco07g0327 322 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 69 156 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco07g0327 322 MobiDBLite consensus disorder prediction 125 161 - -
Cco07g0327 322 MobiDBLite consensus disorder prediction 1 62 - -
Cco07g0327 322 MobiDBLite consensus disorder prediction 145 161 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0327 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0165 Cco-Chr3:1615655 Cco07g0327 Cco-Chr7:3355164 6.50E-43 dispersed
Cco04g1020 Cco-Chr4:25795764 Cco07g0327 Cco-Chr7:3355164 2.00E-39 dispersed
Cco04g2094 Cco-Chr4:34856520 Cco07g0327 Cco-Chr7:3355164 3.80E-26 dispersed
Cco04g2095 Cco-Chr4:34864206 Cco07g0327 Cco-Chr7:3355164 9.70E-30 dispersed
Cco07g0327 Cco-Chr7:3355164 Cco08g0793 Cco-Chr8:19784306 2.50E-25 dispersed
Cco04g2065 Cco-Chr4:34653218 Cco07g0327 Cco-Chr7:3355164 7.10E-26 transposed
Cco10g0781 Cco-Chr10:13711640 Cco07g0327 Cco-Chr7:3355164 1.50E-28 transposed
Cco10g2091 Cco-Chr10:34267190 Cco07g0327 Cco-Chr7:3355164 3.20E-47 wgd
Cco02g2164 Cco-Chr2:34377155 Cco07g0327 Cco-Chr7:3355164 6.90E-42 wgd
Cco07g0327 Cco-Chr7:3355164 Cco09g2189 Cco-Chr9:36236490 6.00E-35 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g300 . . . . . . . . Cmo04g00221 Cmo04g01262 Cma04g01188 Cma04g00219 Car04g01092 . . . Cpe01g00186 . . . . . . . Cla07g00304 Cam07g0322 Cec07g0366 Cco07g0327 Clacu07g0315 Cmu07g0371 Cre07g0681 . . . . . . Chy10g00546 Cme10g00889 . . . . . . . . . . . . . . . Cpe01g01095 . . . . . . . . . . . . . . . Lsi04g00882 Csa05g00707 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco03g0672 . 17 184 C2C2-Dof Transcription Factor Family AT1G29160 59.1 1.3e-44 176.4
Cco04g2154 . 6 159 C2C2-Dof Transcription Factor Family AT1G29160 52.0 7.5e-40 160.6
Cco03g0672 . 17 184 C2C2-Dof Transcription Factor Family AT2G34140 56.7 6.4e-44 174.1
Cco10g2091 . 1 133 C2C2-Dof Transcription Factor Family AT2G37590 66.7 1.3e-40 164.1
Cco07g0327 . 1 133 C2C2-Dof Transcription Factor Family AT2G37590 64.1 1.6e-38 157.1
Cco03g0165 . 68 142 C2C2-Dof Transcription Factor Family AT2G37590 89.3 5.0e-37 152.1
Cco03g0165 . 63 142 C2C2-Dof Transcription Factor Family AT5G02460 86.3 4.2e-38 156.0
Cco02g2164 . 57 205 C2C2-Dof Transcription Factor Family AT3G55370 54.0 5.6e-37 152.1
Cco03g0165 . 51 144 C2C2-Dof Transcription Factor Family AT3G55370 75.5 5.6e-37 152.1
Cco04g1020 . 11 129 C2C2-Dof Transcription Factor Family AT3G55370 64.7 1.3e-36 151.0
Cco06g1737 . 28 324 C2C2-Dof Transcription Factor Family AT5G60850 53.3 3.8e-47 185.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007574 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59604 PF02701 zf-Dof 4.40E-32 No_clan Cco TF