Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0335 ATGGCCGCCCTTCCTCTTACTCTTCTCCCCATTCTCCTTTCGCTTCTTGCCGTCGACGCTAGGATCCCTGGAGTTTACTCCGGCGGCCAGTGGCAGAGTGCTCATGCTACTTTTTATGGCGGCAGTGACGCCTCCGGAACCATGGGAGGTGCTTGCGGTTACGGAAACTTATACAGCCAAGGCTACGGCGTAAACACGGCGGCGTTGAGTACTGCTCTGTTCAACAACGGTTTGAGCTGCGGAGCCTGCTTCGAGCTTAAGTGCGCTAACGATCCACAGTGGTGCCATTCCGGCAGTCCGTCGATTTTCATCACGGCCACGAACTTTTGCCCTCCGAACTACGCTCTTCCAAGCGACAATGGCGGCTGGTGCAACCCTCCCCGTCCTCATTTCGACCTCGCCATGCCTATGTTCCTGAAGATCGCTGAGTACAGAGCCGGAATCGTTCCCGTCTCTTATCGCAGGGTGCCATGCCGCAAGCAAGGAGGAATAAGATTCACAATCAACGGTTTCCGCTACTTCAACTTGGTACTGATCACAAACGTGGCAGGCGCAGGGGACATCGTGAAGGCCAGCGTGAAAGGCAGCAAAACAGAGTGGATGAGCATGAGCCGAAACTGGGGTCAAAACTGGCAATCAAACGCCGTTTTGGTTGGTCAGTCACTTTCCTTTAGGGTCACAGCCAGCGACCGTCGCACCTCCACTTCCTGGAACATCGTCCCTTCCAATTGGCAATTTGGCCAGACTTTCACCGGCAAGAATTTCAGGGTCTAA 774 54.65 MAALPLTLLPILLSLLAVDARIPGVYSGGQWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCANDPQWCHSGSPSIFITATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTASDRRTSTSWNIVPSNWQFGQTFTGKNFRV 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3494809 3497292 - CcPI632755_07g003350.1 Cco07g0335 182988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0335 257 PANTHER EXPANSIN-A15 18 255 IPR002963 GO:0009664(InterPro)
Cco07g0335 257 SUPERFAMILY PHL pollen allergen 160 252 IPR036749 -
Cco07g0335 257 Gene3D - 163 255 IPR036749 -
Cco07g0335 257 FunFam Expansin 163 255 - -
Cco07g0335 257 FunFam Expansin 20 159 - -
Cco07g0335 257 PRINTS Expansin signature 121 138 IPR002963 GO:0009664(InterPro)
Cco07g0335 257 PRINTS Expansin signature 102 112 IPR002963 GO:0009664(InterPro)
Cco07g0335 257 PRINTS Expansin signature 88 99 IPR002963 GO:0009664(InterPro)
Cco07g0335 257 PRINTS Expansin signature 138 151 IPR002963 GO:0009664(InterPro)
Cco07g0335 257 PRINTS Expansin signature 238 254 IPR002963 GO:0009664(InterPro)
Cco07g0335 257 PRINTS Expansin signature 61 75 IPR002963 GO:0009664(InterPro)
Cco07g0335 257 PRINTS Expansin signature 162 174 IPR002963 GO:0009664(InterPro)
Cco07g0335 257 PRINTS Expansin signature 209 230 IPR002963 GO:0009664(InterPro)
Cco07g0335 257 PRINTS Expansin signature 174 195 IPR002963 GO:0009664(InterPro)
Cco07g0335 257 SUPERFAMILY Barwin-like endoglucanases 30 181 IPR036908 -
Cco07g0335 257 Pfam Expansin C-terminal domain 164 241 IPR007117 -
Cco07g0335 257 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576(InterPro)
Cco07g0335 257 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576(InterPro)
Cco07g0335 257 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576(InterPro)
Cco07g0335 257 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576(InterPro)
Cco07g0335 257 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576(InterPro)
Cco07g0335 257 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576(InterPro)
Cco07g0335 257 Pfam Lytic transglycolase 66 153 IPR009009 -
Cco07g0335 257 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 252 IPR007117 -
Cco07g0335 257 Gene3D - 19 159 IPR036908 -
Cco07g0335 257 SMART dpbb_1 66 153 IPR007112 -
Cco07g0335 257 CDD DPBB_EXPA_N 30 158 - -
Cco07g0335 257 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 163 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0339 Cco-Chr1:3343207 Cco07g0335 Cco-Chr7:3494809 3.10E-74 dispersed
Cco04g1156 Cco-Chr4:26961909 Cco07g0335 Cco-Chr7:3494809 4.00E-86 dispersed
Cco07g0335 Cco-Chr7:3494809 Cco07g0535 Cco-Chr7:6861690 4.80E-104 dispersed
Cco02g2145 Cco-Chr2:34230991 Cco07g0335 Cco-Chr7:3494809 2.40E-135 wgd
Cco03g0148 Cco-Chr3:1469472 Cco07g0335 Cco-Chr7:3494809 1.70E-133 wgd
Cco04g1004 Cco-Chr4:25639013 Cco07g0335 Cco-Chr7:3494809 8.30E-136 wgd
Cco07g0335 Cco-Chr7:3494809 Cco09g2168 Cco-Chr9:36068482 1.40E-122 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0335 - - - 0.0