Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco07g0347 | ATGACAGGCCTTAACTCTTCTAATTCCTCTTCTTCTTCTTGTGGTGCCTGCAAGTTTCTTAGGAGAAAATGTAGTGATCAATGTGTTTTTGCTCCTTTCTTTAGCTATGATGAAGCCACTTCCCATTTTGCAGCTGTTCATAAAGTGTTTGGTGCTAGTAATGTCTCCAAGCTTCTCTTACATCTCCCCATTCATATCCGAAGCCACGCTGCCCTTACGGTCGCTTATGAAGCGCTCGAGCGCATGCGAGATCCTACCTATGGTTGCGTTGCGCATATTTTCGCATTGCAGGAAGAGGTTGCGAGCTTGCAAGAAGAGATAGAAATTCTGGGGAGCCAAATAGCAAACTTAGCTGCTACCGGTGGGAGCGTTGCGGGGGTCGAGAATCCATTTATAGATCAGCTTCAAGTTTCACAACAGCTGAAAGATTTTGGGATGATGAACAGAGATGATTATCAAAATGAGCTGCTTTCTGAGTTGCCCTACCAAAGTTTTGATAACGTCCAAGATGATAATAATGGTCAAATGATATCTCCATTGTTTTGTTTAGGGGAAGAAGATGGGGTTTTTGGGTTTTGCAGCTCAAATGATGTTGTTGAGAGTTCAGCCTGTGATGTTTCATTTGAGGAGAGTTTTGTTGGTTATCCATGGGTAGTTGGATGA | 663 | 43.14 | MTGLNSSNSSSSSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLHLPIHIRSHAALTVAYEALERMRDPTYGCVAHIFALQEEVASLQEEIEILGSQIANLAATGGSVAGVENPFIDQLQVSQQLKDFGMMNRDDYQNELLSELPYQSFDNVQDDNNGQMISPLFCLGEEDGVFGFCSSNDVVESSACDVSFEESFVGYPWVVG | 220 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 3663341 | 3664279 | + | CcPI632755_07g003470.1 | Cco07g0347 | 183000 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco07g0347 | 220 | ProSiteProfiles | LOB domain profile. | 12 | 114 | IPR004883 | - | |
| Cco07g0347 | 220 | Coils | Coil | 93 | 120 | - | - | |
| Cco07g0347 | 220 | Pfam | Lateral organ boundaries (LOB) domain | 13 | 109 | IPR004883 | - | |
| Cco07g0347 | 220 | PANTHER | LOB DOMAIN CONTAINING PROTEIN | 11 | 132 | - | GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco07g0347 | Cco-Chr7:3663341 | Cco09g0780 | Cco-Chr9:7184727 | 1.90E-32 | dispersed | |
| Cco07g0347 | Cco-Chr7:3663341 | Cco06g0035 | Cco-Chr6:348355 | 8.20E-36 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 59605 | PF03195 | LOB | 1.50E-32 | No_clan | Cco | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco07g0347 | K13945 | - | csv:101204875 | 369.007 |