Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0348 ATGGCGAATCGATGGTGGGCTGAAAATATACCCACCACCACGGACAGCAGCACCAGCAACCCTTATTCGACTCCATTAAAGCAAAGCTTAGAAGCTGCTGATGAAGAGAACAACTCGGGAAGCCATGAGAGAGCTGAACCAGGCACCAGTTCAAGCACGCGCCGCCCTCGTGGCCGGCCGCCGGGATCTAAGAACAAGCCGAAGCCACCGGTGGTTGTAACGAAGGAGAGCCCCGATGCACTCCGGAGCCACGTTTTGGAAATAGGCAGTGGCAGTGACATCGTTGAAAGCATCTCGAACTTCGCCCAGCGCCGGCAGCGAGGAGTTTCAGTTCTTAGCGGAAATGGGGTTGTCGCCAATGTAACTCTCCGGCATCCGGCGGCCCCAGGCGGCGTTATTACGCTACAAGGTCGATTTGATATACTGTCGCTCTCTGGTGCTTTTTTGCCTGCCCCAGCTCCGCCGGGTGCAACTGGGTTAACTGTCTACTTGGCTGGCGGGCAGGGGCAGGTCGTTGGTGGCATTGTTGTCGGTGCACTTGTTGCAACCGGTCCAGTCATCGTCATCGCTGCCACTTTCACCAATGCAACATTCGAGCGGCTGCCGCTCGAGGACGAGGAGGTGGCCGCGGGAGACAAGTCTGGAACTAGCCAGAACAATTCAACTTCTCAGAGCATGGGGGAGCAACAGCAACAGCAGCCTTCAATGGGAGTTTACAATATGGGTCCAAATTTGGTGCCAAATGGTCAGTGGTGTAGGTGGAACAAGTGGAAGTATGAGTTTGGAGCCACAATATTCTTTGATCAGGTGGTTTGA 816 54.9 MANRWWAENIPTTTDSSTSNPYSTPLKQSLEAADEENNSGSHERAEPGTSSSTRRPRGRPPGSKNKPKPPVVVTKESPDALRSHVLEIGSGSDIVESISNFAQRRQRGVSVLSGNGVVANVTLRHPAAPGGVITLQGRFDILSLSGAFLPAPAPPGATGLTVYLAGGQGQVVGGIVVGALVATGPVIVIAATFTNATFERLPLEDEEVAAGDKSGTSQNNSTSQSMGEQQQQQPSMGVYNMGPNLVPNGQWCRWNKWKYEFGATIFFDQVV 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3666747 3669793 - CcPI632755_07g003480.1 Cco07g0348 183001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0348 271 CDD DUF296 82 165 IPR005175 -
Cco07g0348 271 FunFam AT-hook motif nuclear-localized protein 81 208 - -
Cco07g0348 271 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 24 247 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cco07g0348 271 PIRSF ESCAROLA 7 264 IPR014476 GO:0003680(InterPro)
Cco07g0348 271 SUPERFAMILY AF0104/ALDC/Ptd012-like 79 208 - -
Cco07g0348 271 Gene3D - 81 210 - -
Cco07g0348 271 MobiDBLite consensus disorder prediction 207 239 - -
Cco07g0348 271 ProSiteProfiles PPC domain profile profile. 78 216 IPR005175 -
Cco07g0348 271 Pfam Plants and Prokaryotes Conserved (PCC) domain 82 194 IPR005175 -
Cco07g0348 271 MobiDBLite consensus disorder prediction 1 78 - -
Cco07g0348 271 MobiDBLite consensus disorder prediction 43 58 - -
Cco07g0348 271 MobiDBLite consensus disorder prediction 212 239 - -
Cco07g0348 271 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1816 Cco-Chr2:31046943 Cco07g0348 Cco-Chr7:3666747 3.10E-70 dispersed
Cco05g0522 Cco-Chr5:4163597 Cco07g0348 Cco-Chr7:3666747 7.30E-66 dispersed
Cco06g0700 Cco-Chr6:7843527 Cco07g0348 Cco-Chr7:3666747 8.60E-53 dispersed
Cco06g1635 Cco-Chr6:26963497 Cco07g0348 Cco-Chr7:3666747 3.90E-59 dispersed
Cco07g0348 Cco-Chr7:3666747 Cco09g1233 Cco-Chr9:12556308 1.90E-58 dispersed
Cco03g1293 Cco-Chr3:25825771 Cco07g0348 Cco-Chr7:3666747 4.00E-37 transposed
Cco11g0685 Cco-Chr11:7455160 Cco07g0348 Cco-Chr7:3666747 1.70E-53 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0348 - - - 0.0