Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0414 ATGGAAGGGAAGGAAGAAGATGTAAGACTTGGAGCTAACAAGTTCACCGAGAGACAGCCGATTGGAACGGCGGCGCAGAGTCAAGATGACGGCAAGGACTACAAGGAGCCACCGCCGGCGCCGTTGTTCGAGCCGGAGGAGCTCACTTCATGGTCCTTTTACAGAGCTGGAATTGCTGAATTTTTCGCCACTTTCCTCTTCCTTTACATCACCGTTTTGACCGTCATGGGTGTCGTCCGGTCCAACGAAGCCAACGGCAACACCTGTAAGACCGTCGGGATTCAGGGGATTGCTTGGGCTTTCGGCGGTATGATTTTCGCTCTGGTTTACTGTACTGCTGGAATTTCCGGTGGACACATTAACCCGGCGGTGACTTTCGGGCTGTTTTTGGCGAGAAAGTTGTCGTTGACCAGGGCGATTTTCTACATAGTGATGCAGTGCCTTGGTGCCATCTGCGGCGCCGGCGTGGTGAAGGGGTTCCAACCCAAGCCCTACGACAGGCTCGGTGGTGGAGCTAACGTTGTGAACAGTGGATACACCAAAGGAGATGGGCTCGGCGCTGAGATTGTCGGTACATTCATCCTTGTTTACACCGTCTTCTCCGCCACTGACGCGAAACGTAGCGCCAGAGACTCACATGTTCCGATTTTGGCACCGTTGCCAATTGGGTTTGCAGTGTTCTTAGTTCACTTGGCCACCATTCCGATCACCGGCACCGGCATCAACCCAGCCCGGAGCTTGGGAGCTGCCATTATTTTCAACCACGACAAAGCCTGGGATCATCACTGGATTTTCTGGGTGGGACCATTCATCGGCGCTGCTCTTGCAGCTCTTTACCACCAAGTTGTGATCAGAGCCATCCCTTTCAAGTCCAAGTGA 879 53.7 MEGKEEDVRLGANKFTERQPIGTAAQSQDDGKDYKEPPPAPLFEPEELTSWSFYRAGIAEFFATFLFLYITVLTVMGVVRSNEANGNTCKTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIVMQCLGAICGAGVVKGFQPKPYDRLGGGANVVNSGYTKGDGLGAEIVGTFILVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNHDKAWDHHWIFWVGPFIGAALAALYHQVVIRAIPFKSK 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4543352 4544990 - CcPI632755_07g004140.1 Cco07g0414 183067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0414 292 Gene3D Glycerol uptake facilitator protein. 40 291 IPR023271 -
Cco07g0414 292 PRINTS Major intrinsic protein family signature 55 74 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco07g0414 292 PRINTS Major intrinsic protein family signature 223 245 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco07g0414 292 PRINTS Major intrinsic protein family signature 263 283 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco07g0414 292 PRINTS Major intrinsic protein family signature 101 125 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco07g0414 292 PRINTS Major intrinsic protein family signature 138 157 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco07g0414 292 PRINTS Major intrinsic protein family signature 187 205 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco07g0414 292 SUPERFAMILY Aquaporin-like 46 285 IPR023271 -
Cco07g0414 292 CDD MIP 55 283 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco07g0414 292 FunFam Probable aquaporin PIP1-2 40 292 - -
Cco07g0414 292 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 5 291 IPR034294 GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0009414(PANTHER)|GO:0009506(PANTHER)|GO:0015250(PANTHER)
Cco07g0414 292 Pfam Major intrinsic protein 47 280 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco07g0414 292 NCBIfam MIP family channel protein 59 280 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco07g0414 292 MobiDBLite consensus disorder prediction 1 39 - -
Cco07g0414 292 ProSitePatterns MIP family signature. 119 127 IPR022357 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0414 Cco-Chr7:4543352 Cco08g0888 Cco-Chr8:20756617 7.70E-106 dispersed
Cco07g0414 Cco-Chr7:4543352 Cco07g0415 Cco-Chr7:4549388 4.30E-165 tandem
Cco01g0266 Cco-Chr1:2541294 Cco07g0414 Cco-Chr7:4543352 1.80E-139 transposed
Cco02g1243 Cco-Chr2:23664736 Cco07g0414 Cco-Chr7:4543352 1.30E-16 transposed
Cco10g2174 Cco-Chr10:34890411 Cco07g0414 Cco-Chr7:4543352 1.00E-123 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0414 K09872 - csv:101215145 565.459