Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0418 ATGGTAGGCGTCTTTGGTAAACTGTCATCCATGTCGTCAATCGTTGATATGCGACCAGTCGATCGATTTTCTGGCAGCTACGTCTACTCAACGAACGATAATCAATTTCAATCCAATGCCTTGATTTTTCACTACCACCGCCAACGGCAAATGGCTTCCGTATATCGTGATCGGACGTCGGAATTTCGGTCACTGTCGGAGACGCTGAAGAAGATCGGTGGAGCCACAGCTGCGGTCAATCCAGCTCAAAATGAACCATCGGCGTCCACGCCCTCCGGATCACCGGCCTTTGCACGATCAGAATTCAGCAAAAAGGCCTCGCGCATCGGATTGGGTATCCAAGAAACCTCTCAGAAGATCGTGAGGCTCGCTCAGTTGGCGAAAAGATCATCAATGTTTGATGACCCAATGAGGGAAATACAGGAAATGACTGCTTTGATTAAAAATGATATTACATCCTTGAATGTAGCGATCACAGACTTGCAAACCATCCATAACATGGAGACAACAGAGGGGAATTATTCAGAGGATAGAGTGGTTCATTCAACAGCTGTCTGTGATGACTTGAAGAGCAGACTTATGGGAGCTACAAAACAGCTTCAAGATGTGCTAACTACAAGAACAGAGAATATCAAGGCCAATGAGAGCCGGAGGCAAATATTTTCTGCAAATGCATCCAGAGAAAGTCCTTTCCAGAATCAACCCAAAACTGTAACACAACCTCCACCTTGGTCAAGTAATACATCCCGAAGTGCCCAATCACCCTTGTTGTCATCAAATGGAGCTCAAGTTGGGGGTCAATTGAGACGAAGGTTAGCTGTGGAGAACATGAACACCCCATCACAGCAAATGGAGATGTCAATGTTACAGCAGGTGGTTCCTAGGCAGGAAAATTATTCACAAAGTCGTGCAGTTGCGCTCCATAATGTGGAATCCACCATATCAGAACTCAGTGGAATTTTTACACATCTTGCCACTATGGTAGCACATCAAGGAGAACTTGCTATCAGGATTGATGACAATATGGATGAATCGTTGGCAAATGTAGATGGTGCTCGGAGTGCTCTTTTAAGGCATCTTAACCAGATATCATCAAACAGATGGCTTCTTATAAAAATATTTGCCATTTTAATAATTTTCTTGATGGTCTTTATATTCTTGGCGTGA 1167 44.13 MVGVFGKLSSMSSIVDMRPVDRFSGSYVYSTNDNQFQSNALIFHYHRQRQMASVYRDRTSEFRSLSETLKKIGGATAAVNPAQNEPSASTPSGSPAFARSEFSKKASRIGLGIQETSQKIVRLAQLAKRSSMFDDPMREIQEMTALIKNDITSLNVAITDLQTIHNMETTEGNYSEDRVVHSTAVCDDLKSRLMGATKQLQDVLTTRTENIKANESRRQIFSANASRESPFQNQPKTVTQPPPWSSNTSRSAQSPLLSSNGAQVGGQLRRRLAVENMNTPSQQMEMSMLQQVVPRQENYSQSRAVALHNVESTISELSGIFTHLATMVAHQGELAIRIDDNMDESLANVDGARSALLRHLNQISSNRWLLIKIFAILIIFLMVFIFLA 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4580685 4585344 + CcPI632755_07g004180.1 Cco07g0418 183071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0418 388 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 56 71 IPR021538 -
Cco07g0418 388 CDD SNARE_syntaxin5 300 385 - -
Cco07g0418 388 SUPERFAMILY t-snare proteins 99 352 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Cco07g0418 388 MobiDBLite consensus disorder prediction 80 97 - -
Cco07g0418 388 Pfam SNARE domain 334 385 IPR000727 -
Cco07g0418 388 SMART tSNARE_6 292 359 IPR000727 -
Cco07g0418 388 MobiDBLite consensus disorder prediction 76 98 - -
Cco07g0418 388 PANTHER SYNTAXIN 109 379 IPR045242 GO:0000139(PANTHER)|GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006888(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Cco07g0418 388 MobiDBLite consensus disorder prediction 223 265 - -
Cco07g0418 388 ProSitePatterns Syntaxin / epimorphin family signature. 303 342 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Cco07g0418 388 Gene3D - 98 352 - -
Cco07g0418 388 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 297 359 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0418 Cco-Chr7:4580685 Cco08g1446 Cco-Chr8:26335914 1.50E-69 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0418 K08490 - csv:101213786 583.948