Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco07g0418 | ATGGTAGGCGTCTTTGGTAAACTGTCATCCATGTCGTCAATCGTTGATATGCGACCAGTCGATCGATTTTCTGGCAGCTACGTCTACTCAACGAACGATAATCAATTTCAATCCAATGCCTTGATTTTTCACTACCACCGCCAACGGCAAATGGCTTCCGTATATCGTGATCGGACGTCGGAATTTCGGTCACTGTCGGAGACGCTGAAGAAGATCGGTGGAGCCACAGCTGCGGTCAATCCAGCTCAAAATGAACCATCGGCGTCCACGCCCTCCGGATCACCGGCCTTTGCACGATCAGAATTCAGCAAAAAGGCCTCGCGCATCGGATTGGGTATCCAAGAAACCTCTCAGAAGATCGTGAGGCTCGCTCAGTTGGCGAAAAGATCATCAATGTTTGATGACCCAATGAGGGAAATACAGGAAATGACTGCTTTGATTAAAAATGATATTACATCCTTGAATGTAGCGATCACAGACTTGCAAACCATCCATAACATGGAGACAACAGAGGGGAATTATTCAGAGGATAGAGTGGTTCATTCAACAGCTGTCTGTGATGACTTGAAGAGCAGACTTATGGGAGCTACAAAACAGCTTCAAGATGTGCTAACTACAAGAACAGAGAATATCAAGGCCAATGAGAGCCGGAGGCAAATATTTTCTGCAAATGCATCCAGAGAAAGTCCTTTCCAGAATCAACCCAAAACTGTAACACAACCTCCACCTTGGTCAAGTAATACATCCCGAAGTGCCCAATCACCCTTGTTGTCATCAAATGGAGCTCAAGTTGGGGGTCAATTGAGACGAAGGTTAGCTGTGGAGAACATGAACACCCCATCACAGCAAATGGAGATGTCAATGTTACAGCAGGTGGTTCCTAGGCAGGAAAATTATTCACAAAGTCGTGCAGTTGCGCTCCATAATGTGGAATCCACCATATCAGAACTCAGTGGAATTTTTACACATCTTGCCACTATGGTAGCACATCAAGGAGAACTTGCTATCAGGATTGATGACAATATGGATGAATCGTTGGCAAATGTAGATGGTGCTCGGAGTGCTCTTTTAAGGCATCTTAACCAGATATCATCAAACAGATGGCTTCTTATAAAAATATTTGCCATTTTAATAATTTTCTTGATGGTCTTTATATTCTTGGCGTGA | 1167 | 44.13 | MVGVFGKLSSMSSIVDMRPVDRFSGSYVYSTNDNQFQSNALIFHYHRQRQMASVYRDRTSEFRSLSETLKKIGGATAAVNPAQNEPSASTPSGSPAFARSEFSKKASRIGLGIQETSQKIVRLAQLAKRSSMFDDPMREIQEMTALIKNDITSLNVAITDLQTIHNMETTEGNYSEDRVVHSTAVCDDLKSRLMGATKQLQDVLTTRTENIKANESRRQIFSANASRESPFQNQPKTVTQPPPWSSNTSRSAQSPLLSSNGAQVGGQLRRRLAVENMNTPSQQMEMSMLQQVVPRQENYSQSRAVALHNVESTISELSGIFTHLATMVAHQGELAIRIDDNMDESLANVDGARSALLRHLNQISSNRWLLIKIFAILIIFLMVFIFLA | 388 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 4580685 | 4585344 | + | CcPI632755_07g004180.1 | Cco07g0418 | 183071 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco07g0418 | 388 | Pfam | Syntaxin-5 N-terminal, Sly1p-binding domain | 56 | 71 | IPR021538 | - | |
Cco07g0418 | 388 | CDD | SNARE_syntaxin5 | 300 | 385 | - | - | |
Cco07g0418 | 388 | SUPERFAMILY | t-snare proteins | 99 | 352 | IPR010989 | GO:0016020(InterPro)|GO:0016192(InterPro) | |
Cco07g0418 | 388 | MobiDBLite | consensus disorder prediction | 80 | 97 | - | - | |
Cco07g0418 | 388 | Pfam | SNARE domain | 334 | 385 | IPR000727 | - | |
Cco07g0418 | 388 | SMART | tSNARE_6 | 292 | 359 | IPR000727 | - | |
Cco07g0418 | 388 | MobiDBLite | consensus disorder prediction | 76 | 98 | - | - | |
Cco07g0418 | 388 | PANTHER | SYNTAXIN | 109 | 379 | IPR045242 | GO:0000139(PANTHER)|GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006888(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) | |
Cco07g0418 | 388 | MobiDBLite | consensus disorder prediction | 223 | 265 | - | - | |
Cco07g0418 | 388 | ProSitePatterns | Syntaxin / epimorphin family signature. | 303 | 342 | IPR006012 | GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro) | |
Cco07g0418 | 388 | Gene3D | - | 98 | 352 | - | - | |
Cco07g0418 | 388 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 297 | 359 | IPR000727 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco07g0418 | Cco-Chr7:4580685 | Cco08g1446 | Cco-Chr8:26335914 | 1.50E-69 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco07g0418 | K08490 | - | csv:101213786 | 583.948 |